Wall clock time and date at job start Mon Mar 30 2020 03:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47791 * 2 1 4 4 C 1.50702 * 109.47197 * 239.99722 * 2 1 3 5 5 H 1.08001 * 120.00101 * 240.00481 * 4 2 1 6 6 C 1.37880 * 119.99778 * 60.00314 * 4 2 1 7 7 N 1.31512 * 120.00077 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99627 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47146 * 60.00151 * 8 6 4 10 10 H 1.48509 * 109.46640 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47142 * 299.99788 * 8 6 4 12 12 N 1.46504 * 109.47194 * 119.99980 * 2 1 3 13 13 N 1.40097 * 119.99839 * 270.00335 * 12 2 1 14 14 C 1.28014 * 119.99570 * 174.56683 * 13 12 2 15 15 C 1.50654 * 119.84318 * 352.61229 * 14 13 12 16 16 C 1.53687 * 109.15896 * 117.48283 * 15 14 13 17 17 S 1.81621 * 108.98143 * 57.98059 * 16 15 14 18 18 C 1.81630 * 102.56285 * 303.38793 * 17 16 15 19 19 C 1.50658 * 119.83393 * 172.87908 * 14 13 12 20 20 H 1.09005 * 109.47657 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47242 * 300.00266 * 1 2 3 22 22 H 1.09006 * 109.46890 * 60.00080 * 1 2 3 23 23 H 0.97003 * 119.99922 * 180.02562 * 7 6 4 24 24 H 0.97002 * 119.99829 * 89.99290 * 12 2 1 25 25 H 1.09002 * 109.47618 * 237.48601 * 15 14 13 26 26 H 1.09003 * 109.47367 * 357.50431 * 15 14 13 27 27 H 1.09005 * 109.66829 * 298.07227 * 16 15 14 28 28 H 1.08999 * 109.54334 * 177.81947 * 16 15 14 29 29 H 1.08994 * 109.54130 * 296.62635 * 18 17 16 30 30 H 1.08997 * 109.61214 * 176.39955 * 18 17 16 31 31 H 1.09000 * 109.48406 * 2.49421 * 19 14 13 32 32 H 1.08998 * 109.47781 * 122.50414 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.8281 -2.5199 -4.0081 10 1 1.8269 -0.4200 -5.2205 11 1 3.8075 -1.1191 -4.0076 12 7 2.0183 -0.6906 1.1962 13 7 2.2517 0.0299 2.3748 14 6 2.5780 -0.5869 3.4480 15 6 2.5482 -2.0927 3.4859 16 6 3.9689 -2.6190 3.7440 17 16 4.5811 -1.9251 5.3068 18 6 4.4353 -0.1362 5.0288 19 6 2.9843 0.1968 4.6689 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8901 23 1 0.7082 1.1608 -3.4845 24 1 2.1799 -1.6468 1.1722 25 1 1.8846 -2.4230 4.2850 26 1 2.1850 -2.4731 2.5311 27 1 4.6260 -2.3164 2.9285 28 1 3.9482 -3.7067 3.8112 29 1 5.0912 0.1602 4.2103 30 1 4.7183 0.3992 5.9351 31 1 2.8967 1.2634 4.4620 32 1 2.3334 -0.0662 5.5027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306543892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:55 Heat of formation + Delta-G solvation = 15.952005 kcal Electronic energy + Delta-G solvation = -13843.415601 eV Core-core repulsion = 11544.031991 eV Total energy + Delta-G solvation = -2299.383610 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.31603 -36.75810 -34.54595 -32.74958 -32.41683 -28.93884 -27.31553 -25.44428 -24.40622 -22.29785 -20.26356 -18.86298 -17.88842 -17.01240 -16.69647 -15.95535 -15.41031 -15.07193 -14.81781 -14.52793 -14.34049 -13.98439 -13.62625 -13.36083 -13.17826 -12.90912 -12.75074 -12.44886 -12.33152 -12.15157 -11.95626 -11.86536 -11.14271 -10.74804 -10.59039 -10.57910 -8.76722 -8.49976 -8.19319 -6.36151 0.82804 1.40345 1.42816 1.43834 1.51316 1.56639 2.23303 2.48923 3.09786 3.63230 3.86588 4.03936 4.09659 4.17391 4.31785 4.45632 4.68596 4.72313 4.81705 4.89026 4.93751 5.01291 5.10675 5.21651 5.41523 5.55074 5.78799 5.87568 6.19991 6.42501 6.84513 7.35742 7.83842 8.85903 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.042823 B = 0.005918 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.694036 B = 4730.412188 C = 5059.633012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.308 3.692 3 H -0.002 1.002 4 C -0.548 4.548 5 H 0.059 0.941 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.969 3.031 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.273 1.273 12 N -0.650 5.650 13 N -0.250 5.250 14 C 0.008 3.992 15 C -0.105 4.105 16 C -0.067 4.067 17 S -0.271 6.271 18 C -0.067 4.067 19 C -0.046 4.046 20 H 0.028 0.972 21 H 0.016 0.984 22 H 0.068 0.932 23 H 0.267 0.733 24 H 0.372 0.628 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.123 0.877 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.920 -4.981 13.567 15.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.204 3.796 3 H 0.016 0.984 4 C -0.587 4.587 5 H 0.077 0.923 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.794 3.206 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.198 1.198 12 N -0.389 5.389 13 N -0.057 5.057 14 C -0.187 4.187 15 C -0.146 4.146 16 C -0.217 4.217 17 S -0.045 6.045 18 C -0.216 4.216 19 C -0.087 4.087 20 H 0.048 0.952 21 H 0.035 0.965 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.212 0.788 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.141 0.859 29 H 0.093 0.907 30 H 0.154 0.846 31 H 0.105 0.895 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.963 -4.370 13.763 15.269 hybrid contribution -0.234 -0.724 -1.991 2.131 sum 4.729 -5.094 11.772 13.671 Atomic orbital electron populations 1.22032 0.99090 0.98898 0.99533 1.18055 0.90026 0.91528 0.80031 0.98388 1.21470 1.32515 1.13455 0.91241 0.92301 1.25703 0.94867 0.95632 1.01890 1.70008 1.36791 1.23720 1.24726 0.85449 0.78571 0.78698 0.77921 1.19263 1.20552 1.19842 1.48557 1.76401 1.07884 1.06103 1.73586 1.08422 1.29169 0.94557 1.24798 1.04885 0.94429 0.94594 1.21212 0.97283 0.92851 1.03297 1.23364 0.97400 1.04241 0.96681 1.86587 1.85752 1.07073 1.25056 1.23423 0.98563 0.93233 1.06425 1.20432 0.95320 0.99702 0.93207 0.95248 0.96526 0.91347 0.92388 0.78808 0.87852 0.91656 0.91156 0.85872 0.90682 0.84551 0.89531 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.93 9.29 71.98 0.67 -6.26 16 2 C 0.31 16.30 3.23 44.24 0.14 16.44 16 3 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 4 C -0.55 -30.07 8.74 25.60 0.22 -29.85 16 5 H 0.06 3.13 7.79 -2.91 -0.02 3.11 16 6 C 0.02 1.06 5.30 84.66 0.45 1.51 16 7 N -0.91 -52.07 11.32 21.45 0.24 -51.83 16 8 Si 0.97 42.64 29.54 68.60 2.03 44.67 16 9 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 N -0.65 -29.30 5.90 -172.52 -1.02 -30.32 16 13 N -0.25 -10.14 11.38 -41.27 -0.47 -10.61 16 14 C 0.01 0.24 6.18 46.50 0.29 0.52 16 15 C -0.10 -2.77 5.75 30.06 0.17 -2.60 16 16 C -0.07 -1.56 6.50 72.21 0.47 -1.09 16 17 S -0.27 -5.96 22.23 -56.49 -1.26 -7.22 16 18 C -0.07 -1.35 6.48 72.04 0.47 -0.89 16 19 C -0.05 -1.06 5.99 29.89 0.18 -0.88 16 20 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 21 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.07 3.76 6.07 -2.38 -0.01 3.74 16 23 H 0.27 14.36 8.31 -92.71 -0.77 13.58 16 24 H 0.37 15.59 6.12 -213.32 -1.31 14.28 16 25 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.07 1.93 5.54 -2.39 -0.01 1.92 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 28 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.09 2.05 8.10 -2.39 -0.02 2.03 16 32 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -61.00 274.35 2.39 -58.61 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -0.20 Total: 19.79 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 3.06 Total: -23.10 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -1.25 Total: -92.76 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: -5.96 SS G_CDS: -1.26 Total: -7.22 kcal Total: -61.00 2.39 -58.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306543892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.567 kcal (2) G-P(sol) polarization free energy of solvation -61.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds