Wall clock time and date at job start Mon Mar 30 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46933 * 2 1 4 4 C 1.50701 * 109.47257 * 240.00411 * 2 1 3 5 5 H 1.08003 * 119.99816 * 239.99813 * 4 2 1 6 6 C 1.37872 * 120.00149 * 59.99467 * 4 2 1 7 7 N 1.31512 * 120.00455 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99902 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46969 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47074 * 120.00175 * 8 6 4 11 11 H 1.48503 * 109.47108 * 240.00424 * 8 6 4 12 12 N 1.46501 * 109.47594 * 119.99860 * 2 1 3 13 13 N 1.40099 * 119.99788 * 270.00730 * 12 2 1 14 14 C 1.28015 * 119.99362 * 179.97438 * 13 12 2 15 15 C 1.50533 * 123.32230 * 179.97438 * 14 13 12 16 16 C 1.55228 * 109.17303 * 149.66922 * 15 14 13 17 17 S 1.84080 * 100.50278 * 41.07146 * 16 15 14 18 18 C 1.51342 * 123.33078 * 359.97438 * 14 13 12 19 19 H 1.09002 * 110.33638 * 302.23347 * 18 14 13 20 20 C 1.53006 * 110.33601 * 64.36716 * 18 14 13 21 21 H 1.08995 * 109.47387 * 299.99862 * 1 2 3 22 22 H 1.09003 * 109.47594 * 60.00239 * 1 2 3 23 23 H 1.09007 * 109.46933 * 180.02562 * 1 2 3 24 24 H 0.96998 * 120.00502 * 179.97438 * 7 6 4 25 25 H 0.96998 * 119.99446 * 89.99344 * 12 2 1 26 26 H 1.08991 * 109.53632 * 269.61285 * 15 14 13 27 27 H 1.09001 * 109.53369 * 29.73047 * 15 14 13 28 28 H 1.09002 * 111.20747 * 158.88712 * 16 15 14 29 29 H 1.09004 * 111.21058 * 283.25766 * 16 15 14 30 30 H 1.09001 * 109.47002 * 59.99907 * 20 18 14 31 31 H 1.08993 * 109.46955 * 180.02562 * 20 18 14 32 32 H 1.09000 * 109.47050 * 300.00173 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6035 8 14 2.3214 -1.1202 -4.0080 9 1 3.1466 -2.2868 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1467 -0.1872 -4.8165 12 7 2.0184 -0.6906 1.1962 13 7 2.2518 0.0300 2.3747 14 6 2.6782 -0.5736 3.4201 15 6 2.9543 0.1259 4.7241 16 6 2.7014 -0.8608 5.8954 17 16 3.4393 -2.3989 5.2037 18 6 2.9544 -2.0608 3.4670 19 1 2.0565 -2.6213 3.2067 20 6 4.0983 -2.4194 2.5161 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7094 1.1618 -3.4844 25 1 2.1800 -1.6467 1.1721 26 1 3.9915 0.4598 4.7461 27 1 2.2927 0.9866 4.8232 28 1 3.2243 -0.5439 6.7978 29 1 1.6349 -0.9850 6.0832 30 1 4.9988 -1.8810 2.8117 31 1 4.2849 -3.4924 2.5607 32 1 3.8257 -2.1404 1.4983 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306725530.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:52 Heat of formation + Delta-G solvation = 30.414753 kcal Electronic energy + Delta-G solvation = -13906.554255 eV Core-core repulsion = 11607.797796 eV Total energy + Delta-G solvation = -2298.756459 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.099 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.91153 -35.01441 -32.93455 -31.66433 -30.63264 -27.32300 -25.26685 -23.87664 -23.47511 -20.41449 -18.98828 -16.99663 -16.25943 -15.95554 -15.13078 -14.90650 -14.02430 -13.59427 -13.15866 -12.83425 -12.59504 -12.42920 -12.01672 -11.94017 -11.71153 -11.36360 -11.08458 -11.05234 -10.80165 -10.38448 -10.25799 -10.13684 -10.08245 -9.33881 -9.00978 -8.54961 -7.67040 -7.01229 -6.17058 -4.25351 1.88289 2.35024 2.73863 3.21212 3.29023 3.31933 3.69658 4.33068 4.72602 4.87932 5.06720 5.15586 5.20600 5.22566 5.41784 5.70080 5.82116 5.90913 5.93439 6.14940 6.33603 6.69174 6.92611 6.96059 7.12164 7.53975 7.73811 7.82522 8.11578 8.26763 8.82296 9.27632 9.41847 10.88971 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.046335 B = 0.006198 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.146197 B = 4516.808563 C = 4921.022782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.297 3.703 3 H 0.041 0.959 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.629 5.629 13 N -0.184 5.184 14 C -0.017 4.017 15 C -0.055 4.055 16 C -0.061 4.061 17 S -0.295 6.295 18 C -0.019 4.019 19 H 0.094 0.906 20 C -0.139 4.139 21 H 0.012 0.988 22 H 0.090 0.910 23 H 0.025 0.975 24 H 0.264 0.736 25 H 0.371 0.629 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.107 -3.283 12.220 13.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.194 3.806 3 H 0.059 0.941 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.367 5.367 13 N 0.006 4.994 14 C -0.212 4.212 15 C -0.095 4.095 16 C -0.210 4.210 17 S -0.069 6.069 18 C -0.151 4.151 19 H 0.112 0.888 20 C -0.199 4.199 21 H 0.031 0.969 22 H 0.108 0.892 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.209 0.791 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.126 0.874 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.270 -3.064 12.057 12.863 hybrid contribution -0.158 -0.778 -1.238 1.470 sum 3.111 -3.842 10.819 11.895 Atomic orbital electron populations 1.22209 0.99096 0.99153 1.00515 1.18542 0.90099 0.93569 0.78346 0.94076 1.21252 1.32197 1.13252 0.90194 0.92216 1.24853 0.94801 0.94983 0.98960 1.69894 1.36067 1.22531 1.23838 0.86383 0.78637 0.79565 0.82478 1.19753 1.20813 1.20807 1.49041 1.73291 1.07869 1.06532 1.73321 1.05197 1.27182 0.93690 1.24080 1.09794 0.91423 0.95867 1.20690 1.03193 0.97611 0.88032 1.24286 1.03397 0.93131 1.00187 1.87649 1.76876 1.34262 1.08155 1.22923 1.01350 0.97506 0.93288 0.88807 1.21820 0.97291 1.01731 0.99068 0.96916 0.89160 0.95580 0.92594 0.79064 0.89540 0.89370 0.87414 0.89062 0.91300 0.91967 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.29 37.16 0.35 -3.33 16 2 C 0.30 7.48 3.23 -69.08 -0.22 7.25 16 3 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.53 -14.07 8.74 -34.44 -0.30 -14.37 16 5 H 0.06 1.56 7.79 -52.48 -0.41 1.15 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.59 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.63 -13.67 5.47 -5.88 -0.03 -13.70 16 13 N -0.18 -3.67 11.49 35.72 0.41 -3.26 16 14 C -0.02 -0.27 6.50 -78.68 -0.51 -0.79 16 15 C -0.05 -0.70 6.22 -26.78 -0.17 -0.86 16 16 C -0.06 -0.66 7.56 38.34 0.29 -0.37 16 17 S -0.29 -4.00 22.70 -107.50 -2.44 -6.44 16 18 C -0.02 -0.29 2.92 -27.56 -0.08 -0.37 16 19 H 0.09 1.47 8.02 -51.93 -0.42 1.05 16 20 C -0.14 -2.07 9.07 37.16 0.34 -1.74 16 21 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 22 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.37 7.59 5.63 -182.60 -1.03 6.56 16 26 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.30 5.85 -51.93 -0.30 1.00 16 LS Contribution 275.61 15.07 4.15 4.15 Total: -1.00 -27.67 275.61 -8.12 -35.79 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.41 Total: 4.59 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.41 Total: -12.88 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 1.01 Total: -40.82 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: -4.00 SS G_CDS: -2.44 Total: -6.44 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.67 -8.12 -35.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306725530.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.208 kcal (2) G-P(sol) polarization free energy of solvation -27.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds