Wall clock time and date at job start Mon Mar 30 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46933 * 2 1 4 4 C 1.50701 * 109.47257 * 240.00411 * 2 1 3 5 5 H 1.08003 * 119.99816 * 239.99813 * 4 2 1 6 6 C 1.37872 * 120.00149 * 59.99467 * 4 2 1 7 7 N 1.31512 * 120.00455 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99902 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46969 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47074 * 120.00175 * 8 6 4 11 11 H 1.48503 * 109.47108 * 240.00424 * 8 6 4 12 12 N 1.46501 * 109.47594 * 119.99860 * 2 1 3 13 13 N 1.40099 * 119.99788 * 270.00730 * 12 2 1 14 14 C 1.28015 * 119.99362 * 179.97438 * 13 12 2 15 15 C 1.50533 * 123.32230 * 179.97438 * 14 13 12 16 16 C 1.55228 * 109.17303 * 149.66922 * 15 14 13 17 17 S 1.84080 * 100.50278 * 41.07146 * 16 15 14 18 18 C 1.51342 * 123.33078 * 359.97438 * 14 13 12 19 19 H 1.09002 * 110.33638 * 302.23347 * 18 14 13 20 20 C 1.53006 * 110.33601 * 64.36716 * 18 14 13 21 21 H 1.08995 * 109.47387 * 299.99862 * 1 2 3 22 22 H 1.09003 * 109.47594 * 60.00239 * 1 2 3 23 23 H 1.09007 * 109.46933 * 180.02562 * 1 2 3 24 24 H 0.96998 * 120.00502 * 179.97438 * 7 6 4 25 25 H 0.96998 * 119.99446 * 89.99344 * 12 2 1 26 26 H 1.08991 * 109.53632 * 269.61285 * 15 14 13 27 27 H 1.09001 * 109.53369 * 29.73047 * 15 14 13 28 28 H 1.09002 * 111.20747 * 158.88712 * 16 15 14 29 29 H 1.09004 * 111.21058 * 283.25766 * 16 15 14 30 30 H 1.09001 * 109.47002 * 59.99907 * 20 18 14 31 31 H 1.08993 * 109.46955 * 180.02562 * 20 18 14 32 32 H 1.09000 * 109.47050 * 300.00173 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6035 8 14 2.3214 -1.1202 -4.0080 9 1 3.1466 -2.2868 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1467 -0.1872 -4.8165 12 7 2.0184 -0.6906 1.1962 13 7 2.2518 0.0300 2.3747 14 6 2.6782 -0.5736 3.4201 15 6 2.9543 0.1259 4.7241 16 6 2.7014 -0.8608 5.8954 17 16 3.4393 -2.3989 5.2037 18 6 2.9544 -2.0608 3.4670 19 1 2.0565 -2.6213 3.2067 20 6 4.0983 -2.4194 2.5161 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7094 1.1618 -3.4844 25 1 2.1800 -1.6467 1.1721 26 1 3.9915 0.4598 4.7461 27 1 2.2927 0.9866 4.8232 28 1 3.2243 -0.5439 6.7978 29 1 1.6349 -0.9850 6.0832 30 1 4.9988 -1.8810 2.8117 31 1 4.2849 -3.4924 2.5607 32 1 3.8257 -2.1404 1.4983 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306725530.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:52 Heat of formation + Delta-G solvation = 14.370748 kcal Electronic energy + Delta-G solvation = -13907.249975 eV Core-core repulsion = 11607.797796 eV Total energy + Delta-G solvation = -2299.452179 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.31694 -36.74756 -34.54024 -32.88944 -32.34051 -28.94430 -27.30278 -25.17478 -24.59378 -22.28427 -20.44360 -18.53369 -17.78375 -17.34802 -16.82291 -16.19378 -15.51867 -15.00144 -14.63987 -14.38261 -14.00463 -13.66522 -13.59573 -13.27917 -13.02902 -12.94296 -12.82635 -12.62928 -12.36832 -12.26666 -12.05643 -11.76219 -11.27100 -11.05049 -10.60306 -10.56179 -8.74412 -8.64255 -8.19144 -6.35646 0.78920 1.30017 1.36448 1.41363 1.42661 1.53998 2.14850 2.45370 3.10270 3.51060 3.81863 3.93608 3.98696 4.24153 4.36181 4.60601 4.70189 4.71805 4.78608 4.93158 4.97211 5.00996 5.12717 5.13966 5.35301 5.53343 5.77274 5.85957 6.17358 6.40078 6.83646 7.36083 7.74905 8.86338 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.046335 B = 0.006198 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.146197 B = 4516.808563 C = 4921.022782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.306 3.694 3 H 0.002 0.998 4 C -0.545 4.545 5 H 0.059 0.941 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.968 3.032 9 H -0.267 1.267 10 H -0.276 1.276 11 H -0.279 1.279 12 N -0.643 5.643 13 N -0.230 5.230 14 C 0.013 3.987 15 C -0.060 4.060 16 C -0.047 4.047 17 S -0.299 6.299 18 C -0.027 4.027 19 H 0.087 0.913 20 C -0.133 4.133 21 H 0.018 0.982 22 H 0.068 0.932 23 H 0.028 0.972 24 H 0.267 0.733 25 H 0.374 0.626 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.142 0.858 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 -4.064 13.783 14.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.203 3.797 3 H 0.020 0.980 4 C -0.585 4.585 5 H 0.077 0.923 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.793 3.207 9 H -0.192 1.192 10 H -0.202 1.202 11 H -0.205 1.205 12 N -0.382 5.382 13 N -0.038 5.038 14 C -0.183 4.183 15 C -0.100 4.100 16 C -0.195 4.195 17 S -0.073 6.073 18 C -0.159 4.159 19 H 0.105 0.895 20 C -0.193 4.193 21 H 0.037 0.963 22 H 0.087 0.913 23 H 0.047 0.953 24 H 0.076 0.924 25 H 0.213 0.787 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.160 0.840 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.994 -3.852 13.639 14.725 hybrid contribution -0.327 -0.532 -1.493 1.618 sum 3.667 -4.385 12.146 13.424 Atomic orbital electron populations 1.22025 0.98913 0.98943 0.99686 1.18120 0.90182 0.91655 0.79777 0.98002 1.21525 1.32370 1.13385 0.91180 0.92264 1.25677 0.94878 0.95624 1.01841 1.70013 1.36899 1.23703 1.24609 0.85359 0.78176 0.78484 0.78689 1.19174 1.20194 1.20521 1.48518 1.75299 1.07673 1.06690 1.73361 1.08650 1.27753 0.94040 1.24962 1.04750 0.92617 0.95966 1.20897 1.04379 0.98214 0.86527 1.24453 1.04424 0.90382 1.00261 1.87715 1.77094 1.36227 1.06313 1.22911 1.01282 0.96514 0.95189 0.89465 1.21744 0.97085 1.02762 0.97672 0.96269 0.91283 0.95301 0.92398 0.78655 0.88047 0.88200 0.83995 0.87988 0.91121 0.90429 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.85 9.29 71.98 0.67 -6.18 16 2 C 0.31 16.00 3.23 44.24 0.14 16.14 16 3 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 4 C -0.55 -29.61 8.74 25.60 0.22 -29.39 16 5 H 0.06 3.14 7.79 -2.91 -0.02 3.11 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -51.58 11.32 21.45 0.24 -51.33 16 8 Si 0.97 42.48 29.54 68.60 2.03 44.51 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 N -0.64 -28.65 5.47 -172.51 -0.94 -29.59 16 13 N -0.23 -9.24 11.49 -40.83 -0.47 -9.71 16 14 C 0.01 0.42 6.50 46.68 0.30 0.72 16 15 C -0.06 -1.33 6.22 30.56 0.19 -1.14 16 16 C -0.05 -0.82 7.56 72.75 0.55 -0.27 16 17 S -0.30 -7.24 22.70 -56.49 -1.28 -8.52 16 18 C -0.03 -0.79 2.92 30.05 0.09 -0.70 16 19 H 0.09 2.67 8.02 -2.39 -0.02 2.65 16 20 C -0.13 -3.85 9.07 71.98 0.65 -3.20 16 21 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 23 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 25 H 0.37 15.70 5.63 -213.32 -1.20 14.50 16 26 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.86 5.85 -2.39 -0.01 1.85 16 Total: -1.00 -60.20 275.61 2.75 -57.46 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -0.10 Total: 19.69 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 3.27 Total: -22.49 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -1.17 Total: -90.64 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: -7.24 SS G_CDS: -1.28 Total: -8.52 kcal Total: -60.20 2.75 -57.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306725530.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.827 kcal (2) G-P(sol) polarization free energy of solvation -60.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds