Wall clock time and date at job start Mon Mar 30 2020 03:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81407 * 102.99914 * 2 1 4 4 C 1.50699 * 115.55842 * 34.31275 * 3 2 1 5 5 N 1.28012 * 120.00150 * 265.68582 * 4 3 2 6 6 N 1.40095 * 120.00229 * 180.02562 * 5 4 3 7 7 C 1.46501 * 119.99995 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47175 * 329.99347 * 7 6 5 9 9 C 1.53004 * 109.47275 * 89.99803 * 7 6 5 10 10 C 1.50700 * 109.47205 * 209.99746 * 7 6 5 11 11 H 1.08006 * 119.99791 * 359.97438 * 10 7 6 12 12 C 1.37875 * 120.00494 * 179.97438 * 10 7 6 13 13 N 1.31506 * 120.00272 * 179.97438 * 12 10 7 14 14 Si 1.86804 * 119.99434 * 359.97438 * 12 10 7 15 15 H 1.48509 * 109.47041 * 90.00272 * 14 12 10 16 16 H 1.48501 * 109.47175 * 209.99725 * 14 12 10 17 17 H 1.48496 * 109.47553 * 330.00386 * 14 12 10 18 18 C 1.53000 * 117.49648 * 180.02562 * 3 2 1 19 19 C 1.52997 * 117.49618 * 248.62591 * 3 2 1 20 20 H 1.09000 * 109.46764 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47125 * 299.99835 * 1 2 3 22 22 H 1.08996 * 109.47295 * 59.99758 * 1 2 3 23 23 H 1.07998 * 120.00262 * 85.69142 * 4 3 2 24 24 H 0.97001 * 120.00083 * 359.97438 * 6 5 4 25 25 H 1.08995 * 109.47014 * 180.02562 * 9 7 6 26 26 H 1.09001 * 109.46742 * 300.00011 * 9 7 6 27 27 H 1.08997 * 109.46809 * 60.00061 * 9 7 6 28 28 H 0.96998 * 120.00083 * 179.97438 * 13 12 10 29 29 H 1.08990 * 117.49990 * 359.97438 * 18 3 2 30 30 H 1.09004 * 117.49237 * 214.97724 * 18 3 2 31 31 H 1.08999 * 117.49685 * 145.02308 * 19 3 2 32 32 H 1.08999 * 117.52022 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 1.2741 2.6537 0.7664 5 7 0.3102 3.2368 0.1585 6 7 -0.5707 4.0610 0.8709 7 6 -1.6742 4.7279 0.1753 8 1 -1.3856 4.9271 -0.8568 9 6 -2.9091 3.8249 0.1944 10 6 -1.9919 6.0281 0.8679 11 1 -1.4284 6.3275 1.7393 12 6 -3.0018 6.8355 0.3891 13 7 -3.2793 7.9698 0.9938 14 14 -3.9758 6.3179 -1.1186 15 1 -5.1535 5.5178 -0.6964 16 1 -4.4347 7.5260 -1.8501 17 1 -3.1137 5.4985 -2.0076 18 6 3.7033 2.1506 -0.0006 19 6 2.8629 2.3446 -1.2638 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.4080 2.7968 1.8284 24 1 -0.4505 4.1895 1.8248 25 1 -3.7299 4.3209 -0.3235 26 1 -2.6793 2.8845 -0.3066 27 1 -3.1977 3.6258 1.2264 28 1 -3.9896 8.5380 0.6567 29 1 4.4326 1.3406 -0.0006 30 1 3.9924 3.0436 0.5537 31 1 2.5989 3.3652 -1.5409 32 1 3.0398 1.6624 -2.0953 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308197608.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:00 Heat of formation + Delta-G solvation = 54.492020 kcal Electronic energy + Delta-G solvation = -13660.530857 eV Core-core repulsion = 11362.818467 eV Total energy + Delta-G solvation = -2297.712390 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.07508 -37.61188 -35.54610 -33.56414 -30.18616 -29.36856 -27.21461 -25.06403 -23.35972 -22.27181 -21.13195 -19.06047 -17.65810 -17.51973 -17.10948 -16.29225 -15.61055 -15.17723 -15.07259 -14.44805 -14.26857 -14.11748 -13.95007 -13.56305 -13.11015 -12.73162 -12.71621 -12.42192 -12.19999 -12.02425 -11.56731 -11.39303 -11.32704 -11.07340 -10.86141 -10.84096 -8.81390 -8.55793 -8.39383 -6.46533 0.63181 1.26033 1.28606 1.34898 1.44982 1.76702 2.06803 2.25346 2.76017 2.96570 3.69154 3.89126 3.96371 4.27180 4.32118 4.42110 4.46868 4.57203 4.70738 4.75202 4.81026 4.87931 4.94860 5.02893 5.22558 5.24984 5.47415 5.58466 6.03954 6.44201 6.60718 7.20218 7.65844 8.76758 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.040977 B = 0.006139 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.146408 B = 4560.275405 C = 4837.793903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.197 6.197 3 C -0.066 4.066 4 C 0.027 3.973 5 N -0.226 5.226 6 N -0.642 5.642 7 C 0.283 3.717 8 H 0.026 0.974 9 C -0.156 4.156 10 C -0.537 4.537 11 H 0.041 0.959 12 C 0.024 3.976 13 N -0.939 5.939 14 Si 0.949 3.051 15 H -0.261 1.261 16 H -0.293 1.293 17 H -0.251 1.251 18 C -0.112 4.112 19 C -0.145 4.145 20 H 0.117 0.883 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.111 0.889 24 H 0.374 0.626 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.271 0.729 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.836 -15.260 -3.530 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S 0.033 5.967 3 C -0.178 4.178 4 C -0.189 4.189 5 N -0.034 5.034 6 N -0.379 5.379 7 C 0.178 3.822 8 H 0.044 0.956 9 C -0.215 4.215 10 C -0.576 4.576 11 H 0.059 0.941 12 C -0.175 4.175 13 N -0.578 5.578 14 Si 0.775 3.225 15 H -0.186 1.186 16 H -0.220 1.220 17 H -0.175 1.175 18 C -0.152 4.152 19 C -0.186 4.186 20 H 0.136 0.864 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.128 0.872 24 H 0.211 0.789 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.141 0.859 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.786 -15.816 -4.495 19.134 hybrid contribution -1.350 1.536 1.025 2.287 sum 8.437 -14.280 -3.470 16.945 Atomic orbital electron populations 1.23353 0.93863 1.06608 1.04619 1.86054 1.07864 1.05539 1.97275 1.21713 0.97312 0.92804 1.05948 1.24536 0.96095 1.00579 0.97702 1.73314 1.00673 1.00872 1.28559 1.48223 1.30118 1.51547 1.07992 1.18452 0.82446 0.88658 0.92671 0.95647 1.22455 0.98649 0.99235 1.01177 1.21311 1.18168 1.03958 1.14195 0.94093 1.25673 0.97618 0.94401 0.99844 1.69998 1.32215 1.13204 1.42423 0.85855 0.79699 0.77240 0.79679 1.18627 1.22009 1.17533 1.23158 0.88757 1.03710 0.99608 1.23312 1.01409 1.02185 0.91656 0.86444 0.91735 0.91134 0.87234 0.78875 0.93947 0.92915 0.92853 0.92014 0.85857 0.87006 0.89373 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 10.07 113.37 1.14 -1.59 16 2 S -0.20 -4.64 22.46 -56.49 -1.27 -5.91 16 3 C -0.07 -1.63 2.67 -11.54 -0.03 -1.66 16 4 C 0.03 0.82 8.95 88.66 0.79 1.61 16 5 N -0.23 -8.28 11.35 -50.46 -0.57 -8.85 16 6 N -0.64 -26.79 6.09 -172.51 -1.05 -27.84 16 7 C 0.28 13.38 2.82 44.25 0.12 13.51 16 8 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 9 C -0.16 -6.62 9.00 71.98 0.65 -5.97 16 10 C -0.54 -30.09 9.32 25.60 0.24 -29.85 16 11 H 0.04 2.52 8.03 -2.91 -0.02 2.50 16 12 C 0.02 1.36 5.45 84.66 0.46 1.82 16 13 N -0.94 -57.18 13.96 21.45 0.30 -56.88 16 14 Si 0.95 43.79 24.37 68.60 1.67 45.47 16 15 H -0.26 -11.31 6.87 99.48 0.68 -10.62 16 16 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 17 H -0.25 -11.00 6.53 99.48 0.65 -10.35 16 18 C -0.11 -2.13 10.00 30.58 0.31 -1.82 16 19 C -0.14 -3.25 9.95 30.58 0.30 -2.95 16 20 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 21 H 0.06 1.68 7.65 -2.39 -0.02 1.67 16 22 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.11 3.13 8.00 -2.91 -0.02 3.11 16 24 H 0.37 15.14 8.56 -213.32 -1.83 13.31 16 25 H 0.04 1.81 3.28 -2.39 -0.01 1.80 16 26 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -62.12 283.11 2.26 -59.85 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -0.80 Total: 21.08 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 3.99 Total: -26.92 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -1.32 Total: -93.57 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.67 Total: 45.47 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -1.27 Total: -5.91 kcal Total: -62.12 2.26 -59.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308197608.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.344 kcal (2) G-P(sol) polarization free energy of solvation -62.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds