Wall clock time and date at job start Mon Mar 30 2020 03:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.54627 * 59.99586 * 11 10 9 13 13 O 1.20823 * 120.00020 * 0.02562 * 12 11 10 14 14 O 1.34233 * 119.99727 * 179.97438 * 12 11 10 15 15 C 1.53178 * 109.54031 * 299.81579 * 11 10 9 16 16 C 1.53280 * 109.06772 * 297.03184 * 15 11 10 17 17 O 1.42900 * 109.46203 * 302.44891 * 16 15 11 18 18 C 1.42900 * 114.10153 * 61.15190 * 17 16 15 19 19 C 1.53090 * 109.41539 * 298.84780 * 18 17 16 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 24 24 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 25 25 H 0.96704 * 116.99595 * 180.02562 * 14 12 11 26 26 H 1.09004 * 109.52062 * 57.02817 * 15 11 10 27 27 H 1.09003 * 109.52095 * 177.20955 * 15 11 10 28 28 H 1.08998 * 109.45735 * 182.44408 * 16 15 11 29 29 H 1.09003 * 109.46261 * 62.45010 * 16 15 11 30 30 H 1.08998 * 109.48092 * 178.86298 * 18 17 16 31 31 H 1.08997 * 109.48467 * 58.83544 * 18 17 16 32 32 H 1.09003 * 109.52372 * 297.69844 * 19 18 17 33 33 H 1.09003 * 109.57344 * 177.54777 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 0.6134 -5.0627 -1.2476 13 8 0.6080 -4.1504 -2.0397 14 8 -0.1516 -6.1442 -1.4642 15 6 0.6017 -5.0778 1.2346 16 6 1.4993 -5.0791 2.4771 17 8 2.4198 -6.1693 2.3983 18 6 3.2976 -6.1116 1.2721 19 6 2.4739 -6.1526 -0.0177 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.8718 -3.6005 -0.9002 24 1 2.8717 -3.6084 0.8798 25 1 -0.6901 -6.1472 -2.2674 26 1 -0.0717 -4.2213 1.2699 27 1 0.0196 -5.9989 1.2052 28 1 0.8833 -5.1872 3.3699 29 1 2.0510 -4.1404 2.5277 30 1 3.9771 -6.9635 1.2968 31 1 3.8730 -5.1865 1.3067 32 1 1.9296 -7.0954 -0.0724 33 1 3.1377 -6.0649 -0.8778 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308380645.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:50 Heat of formation + Delta-G solvation = -177.560975 kcal Electronic energy + Delta-G solvation = -16858.856207 eV Core-core repulsion = 14076.035622 eV Total energy + Delta-G solvation = -2782.820585 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.01019 -39.96109 -37.29545 -36.25961 -34.84420 -32.26077 -31.50370 -27.73319 -26.51048 -24.77837 -23.18699 -22.84129 -20.00648 -18.84311 -18.46676 -18.00488 -17.05279 -16.62815 -16.40606 -16.27006 -15.62958 -15.25756 -15.00793 -14.53950 -14.02697 -13.63878 -13.33870 -13.20839 -12.91191 -12.77099 -12.63772 -12.39023 -12.25732 -12.11512 -11.79985 -11.43005 -11.22645 -11.08032 -10.91475 -10.49865 -10.27842 -8.17771 -6.26564 1.25232 1.37155 1.38243 1.50905 2.12855 2.40675 2.98266 3.15682 3.59646 3.64918 3.81873 4.05088 4.29299 4.34159 4.48226 4.59531 4.67503 4.72339 4.83095 4.90030 4.95483 4.99841 5.09939 5.15485 5.35147 5.50408 5.62908 5.82956 6.00732 6.25537 6.28179 6.90207 7.08811 7.40382 8.94351 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.028897 B = 0.008600 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.740394 B = 3254.997750 C = 3742.070530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.961 3.039 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.056 0.944 9 C 0.014 3.986 10 C -0.085 4.085 11 C -0.048 4.048 12 C 0.483 3.517 13 O -0.535 6.535 14 O -0.507 6.507 15 C -0.139 4.139 16 C 0.066 3.934 17 O -0.388 6.388 18 C 0.058 3.942 19 C -0.135 4.135 20 H 0.261 0.739 21 H -0.003 1.003 22 H 0.011 0.989 23 H 0.047 0.953 24 H 0.075 0.925 25 H 0.422 0.578 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.048 0.952 30 H 0.126 0.874 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.674 -14.461 2.092 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.786 3.214 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.074 0.926 9 C -0.022 4.022 10 C -0.122 4.122 11 C -0.049 4.049 12 C 0.326 3.674 13 O -0.424 6.424 14 O -0.321 6.321 15 C -0.177 4.177 16 C -0.011 4.011 17 O -0.307 6.307 18 C -0.018 4.018 19 C -0.172 4.172 20 H 0.070 0.930 21 H 0.015 0.985 22 H 0.029 0.971 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.283 0.717 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.133 0.867 29 H 0.066 0.934 30 H 0.144 0.856 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.779 -14.258 2.360 14.938 hybrid contribution -0.482 1.568 -1.120 1.987 sum 3.297 -12.690 1.240 13.169 Atomic orbital electron populations 1.70118 1.07742 1.27356 1.52193 1.25945 0.95752 1.03201 0.95081 0.85457 0.79180 0.79077 0.77688 1.18520 1.20828 1.20115 1.21724 0.93323 0.92646 1.49786 0.92561 1.19267 0.94738 0.92344 0.95886 1.21521 0.97895 0.91724 1.01098 1.20683 0.95086 0.98670 0.90489 1.23712 0.77900 0.78497 0.87259 1.90757 1.64920 1.38860 1.47881 1.84477 1.55578 1.42485 1.49529 1.22234 0.98431 1.03415 0.93587 1.22612 0.91162 0.89811 0.97516 1.87879 1.49333 1.46990 1.46503 1.22769 0.91635 1.03574 0.83835 1.22236 0.97840 0.96691 1.00478 0.93043 0.98455 0.97060 0.93431 0.90648 0.71725 0.91853 0.88876 0.86679 0.93364 0.85574 0.92859 0.88728 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.72 13.29 21.45 0.28 -58.43 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 3 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 9 C 0.01 0.78 4.31 29.85 0.13 0.91 16 10 C -0.09 -3.53 3.30 30.59 0.10 -3.43 16 11 C -0.05 -1.61 0.49 -52.81 -0.03 -1.63 16 12 C 0.48 17.35 6.65 71.24 0.47 17.83 16 13 O -0.54 -24.58 14.43 21.97 0.32 -24.26 16 14 O -0.51 -13.35 13.13 -51.44 -0.68 -14.03 16 15 C -0.14 -4.35 4.62 30.75 0.14 -4.21 16 16 C 0.07 1.85 6.57 72.08 0.47 2.33 16 17 O -0.39 -10.36 10.77 -148.98 -1.60 -11.97 16 18 C 0.06 1.33 6.57 72.01 0.47 1.81 16 19 C -0.13 -3.34 4.87 30.68 0.15 -3.19 16 20 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 21 H 0.00 -0.16 6.38 -2.38 -0.02 -0.17 16 22 H 0.01 0.68 5.52 -2.39 -0.01 0.67 16 23 H 0.05 2.04 8.10 -2.38 -0.02 2.02 16 24 H 0.08 2.91 5.01 -2.39 -0.01 2.90 16 25 H 0.42 7.54 9.10 -74.05 -0.67 6.87 16 26 H 0.06 2.35 6.29 -2.39 -0.02 2.33 16 27 H 0.09 2.55 8.05 -2.39 -0.02 2.53 16 28 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.05 1.53 6.60 -2.39 -0.02 1.51 16 30 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.30 6.60 -2.39 -0.02 1.28 16 32 H 0.09 2.10 8.05 -2.39 -0.02 2.08 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -73.97 264.59 3.41 -70.56 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.45 Total: 10.99 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 2.61 Total: -20.63 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.28 Total: -58.43 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -1.96 Total: -50.25 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -73.97 3.41 -70.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308380645.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.999 kcal (2) G-P(sol) polarization free energy of solvation -73.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds