Wall clock time and date at job start Mon Mar 30 2020 02:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81002 * 109.47004 * 180.02562 * 11 10 9 13 13 C 1.76193 * 100.00049 * 180.02562 * 12 11 10 14 14 N 1.29354 * 118.86487 * 359.97438 * 13 12 11 15 15 C 1.45840 * 123.73979 * 180.93833 * 14 13 12 16 16 C 1.53025 * 110.59848 * 339.21614 * 15 14 13 17 17 C 1.53607 * 108.44775 * 49.44739 * 16 15 14 18 18 N 1.37563 * 118.86388 * 179.72961 * 13 12 11 19 19 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 21 21 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 22 22 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 23 23 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 24 24 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 25 25 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 26 26 H 1.08997 * 109.25092 * 99.50862 * 15 14 13 27 27 H 1.09006 * 109.25142 * 218.92951 * 15 14 13 28 28 H 1.09001 * 109.64083 * 169.13905 * 16 15 14 29 29 H 1.09003 * 109.64033 * 289.75821 * 16 15 14 30 30 H 1.08998 * 109.87574 * 60.02399 * 17 16 15 31 31 H 1.09007 * 109.87026 * 181.00839 * 17 16 15 32 32 H 0.97001 * 120.65125 * 347.14470 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 16 2.6562 -6.3629 -0.0019 13 6 1.5361 -7.7230 -0.0018 14 7 0.2647 -7.4848 -0.0008 15 6 -0.7547 -8.5276 0.0193 16 6 -0.1752 -9.8565 -0.4705 17 6 1.1359 -10.1226 0.2842 18 7 2.0439 -9.0014 -0.0080 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5566 -0.8903 21 1 0.6246 -2.5571 0.8897 22 1 2.8725 -3.6048 0.8878 23 1 2.8712 -3.6040 -0.8921 24 1 0.8543 -5.0449 0.8894 25 1 0.8525 -5.0447 -0.8905 26 1 -1.1237 -8.6499 1.0376 27 1 -1.5809 -8.2351 -0.6289 28 1 -0.8831 -10.6608 -0.2703 29 1 0.0235 -9.7973 -1.5406 30 1 0.9423 -10.1775 1.3555 31 1 1.5786 -11.0572 -0.0604 32 1 2.9818 -9.1601 -0.1979 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386370693.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:04 Heat of formation + Delta-G solvation = -22.632385 kcal Electronic energy + Delta-G solvation = -13202.930944 eV Core-core repulsion = 10901.874189 eV Total energy + Delta-G solvation = -2301.056755 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.91249 -36.36306 -34.14892 -33.70471 -33.01712 -29.39878 -26.36631 -25.27613 -24.59522 -22.12560 -20.15650 -19.20681 -18.45678 -16.82821 -16.66744 -16.45648 -16.21297 -15.72895 -14.68666 -14.56056 -14.47497 -14.37129 -13.73143 -13.54100 -13.16816 -12.89758 -12.72523 -12.37821 -12.25970 -11.80080 -11.61941 -11.55204 -11.27066 -11.09566 -10.53969 -10.14481 -9.35839 -8.75838 -8.18070 -6.29680 0.35790 1.19889 1.30390 1.42735 1.44347 1.55641 2.43562 2.65114 3.15320 3.77908 3.92406 4.03492 4.09449 4.18091 4.41430 4.53219 4.60730 4.62180 4.76122 4.85074 4.94898 5.07652 5.14781 5.17544 5.51670 5.61158 5.70323 5.84996 6.23871 6.60086 6.86668 7.13150 7.39613 8.93990 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.065005 B = 0.004509 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.634420 B = 6207.772002 C = 6582.234995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.031 3.969 10 C -0.085 4.085 11 C -0.064 4.064 12 S -0.070 6.070 13 C 0.391 3.609 14 N -0.651 5.651 15 C 0.060 3.940 16 C -0.161 4.161 17 C 0.118 3.882 18 N -0.742 5.742 19 H 0.264 0.736 20 H -0.007 1.007 21 H -0.006 1.006 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.918 -21.200 0.011 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.008 4.008 10 C -0.124 4.124 11 C -0.213 4.213 12 S 0.162 5.838 13 C 0.004 3.996 14 N -0.384 5.384 15 C -0.072 4.072 16 C -0.201 4.201 17 C -0.007 4.007 18 N -0.387 5.387 19 H 0.072 0.928 20 H 0.012 0.988 21 H 0.012 0.988 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.124 0.876 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 4.218 -20.527 0.048 20.956 hybrid contribution -0.942 0.141 -0.094 0.957 sum 3.277 -20.385 -0.045 20.647 Atomic orbital electron populations 1.70116 1.07900 1.27798 1.51634 1.26007 0.95761 1.03458 0.94656 0.85411 0.78678 0.78225 0.78514 1.19736 1.20814 1.18545 1.21683 0.93704 0.92097 1.50645 0.91798 1.18957 0.94189 0.92495 0.95142 1.21276 0.98116 0.91176 1.01858 1.23297 0.98765 0.93719 1.05513 1.85396 1.10148 0.95794 1.92433 1.23785 0.93823 0.88877 0.93149 1.71619 1.00008 1.36057 1.30752 1.21815 0.94557 0.89725 1.01123 1.22353 0.98662 0.98797 1.00256 1.21868 0.89976 0.89437 0.99445 1.45282 1.13235 1.02718 1.77486 0.92771 0.98820 0.98795 0.91850 0.91807 0.90393 0.90410 0.91374 0.90531 0.87567 0.92030 0.91869 0.86447 0.75075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.92 13.29 21.45 0.28 -57.63 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.54 -31.40 9.11 25.60 0.23 -31.16 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.69 4.97 29.85 0.15 1.84 16 10 C -0.09 -3.61 5.16 30.59 0.16 -3.45 16 11 C -0.06 -2.40 4.80 71.98 0.35 -2.06 16 12 S -0.07 -2.11 22.21 -56.49 -1.25 -3.37 16 13 C 0.39 11.10 7.80 179.77 1.40 12.50 16 14 N -0.65 -20.77 9.33 -348.94 -3.25 -24.02 16 15 C 0.06 1.49 7.19 86.51 0.62 2.11 16 16 C -0.16 -2.71 6.25 30.81 0.19 -2.52 16 17 C 0.12 1.73 7.22 86.45 0.62 2.36 16 18 N -0.74 -14.88 5.78 -345.10 -1.99 -16.88 16 19 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 20 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 21 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 22 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 23 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 24 H 0.08 3.09 8.11 -2.39 -0.02 3.07 16 25 H 0.08 3.09 8.10 -2.39 -0.02 3.07 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.41 6.50 8.89 -92.71 -0.82 5.68 16 Total: -1.00 -67.84 281.98 0.27 -67.57 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.27 Total: 7.59 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: 4.19 Total: -19.99 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -4.96 Total: -98.53 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -2.11 SS G_CDS: -1.25 Total: -3.37 kcal Total: -67.84 0.27 -67.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386370693.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.935 kcal (2) G-P(sol) polarization free energy of solvation -67.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds