Wall clock time and date at job start Mon Mar 30 2020 03:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47256 * 2 1 4 4 C 1.50705 * 109.46940 * 239.99896 * 2 1 3 5 5 H 1.07999 * 119.99877 * 240.00078 * 4 2 1 6 6 C 1.37877 * 119.99647 * 60.00210 * 4 2 1 7 7 N 1.31516 * 120.00549 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99584 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47352 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47256 * 119.99649 * 8 6 4 11 11 H 1.48498 * 109.46921 * 239.99669 * 8 6 4 12 12 N 1.46498 * 109.47070 * 120.00118 * 2 1 3 13 13 N 1.40109 * 119.99760 * 269.71824 * 12 2 1 14 14 C 1.28008 * 119.99837 * 180.27649 * 13 12 2 15 15 C 1.51902 * 123.27111 * 0.02826 * 14 13 12 16 16 S 1.83996 * 102.61651 * 204.62731 * 15 14 13 17 17 C 1.84051 * 94.48782 * 325.86846 * 16 15 14 18 18 C 1.49907 * 123.27054 * 179.73183 * 14 13 12 19 19 H 1.09007 * 108.82187 * 58.75724 * 18 14 13 20 20 C 1.52999 * 108.82520 * 300.51266 * 18 14 13 21 21 H 1.09008 * 109.46576 * 300.00118 * 1 2 3 22 22 H 1.08994 * 109.47252 * 59.99913 * 1 2 3 23 23 H 1.08993 * 109.47367 * 180.02562 * 1 2 3 24 24 H 0.96993 * 119.99987 * 180.02562 * 7 6 4 25 25 H 0.97001 * 120.00384 * 90.00306 * 12 2 1 26 26 H 1.08997 * 110.78166 * 322.90892 * 15 14 13 27 27 H 1.09005 * 110.77971 * 86.34449 * 15 14 13 28 28 H 1.08999 * 110.86576 * 151.85862 * 17 16 15 29 29 H 1.08999 * 110.87107 * 275.53791 * 17 16 15 30 30 H 1.08992 * 109.47696 * 59.99430 * 20 18 14 31 31 H 1.09007 * 109.47193 * 180.02562 * 20 18 14 32 32 H 1.09005 * 109.46819 * 299.99287 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 3.1462 -2.2870 -3.6038 10 1 1.1659 -1.5868 -4.8160 11 1 3.1464 -0.1874 -4.8165 12 7 2.0183 -0.6906 1.1961 13 7 2.2574 0.0310 2.3731 14 6 2.6891 -0.5716 3.4167 15 6 2.9678 -2.0642 3.4618 16 16 2.7991 -2.4506 5.2528 17 6 3.4717 -0.8317 5.8134 18 6 2.9750 0.1282 4.7112 19 1 2.0627 0.6143 5.0571 20 6 4.0390 1.2005 4.4683 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.7081 1.1608 -3.4844 25 1 2.1800 -1.6468 1.1722 26 1 2.2301 -2.6132 2.8766 27 1 3.9778 -2.2797 3.1131 28 1 3.0618 -0.5565 6.7852 29 1 4.5611 -0.8527 5.8420 30 1 3.6714 1.9175 3.7344 31 1 4.2554 1.7161 5.4040 32 1 4.9488 0.7312 4.0938 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388791787.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:00 Heat of formation + Delta-G solvation = 28.307958 kcal Electronic energy + Delta-G solvation = -13775.454097 eV Core-core repulsion = 11476.606281 eV Total energy + Delta-G solvation = -2298.847816 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.099 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.91534 -35.40392 -33.43195 -31.09709 -28.97267 -27.42735 -26.39642 -25.22037 -22.53201 -20.31232 -18.67494 -17.10912 -16.18257 -15.79623 -15.29494 -14.88860 -14.04652 -13.71377 -13.20182 -12.86921 -12.64979 -12.40675 -12.17547 -11.84776 -11.59023 -11.27078 -11.17881 -11.02974 -10.77647 -10.40269 -10.25663 -10.15215 -10.00985 -9.45336 -9.02375 -8.54318 -7.68677 -6.99379 -6.16417 -4.24668 1.88280 2.25898 2.82453 3.21487 3.29224 3.32226 3.67666 4.33119 4.68430 4.80762 5.03067 5.16022 5.19310 5.32036 5.48487 5.56534 5.63563 5.78967 6.05182 6.27066 6.33134 6.69347 6.92988 6.98152 7.13562 7.54933 7.74572 7.83912 8.12481 8.27742 8.83177 9.28886 9.42438 10.89580 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.042466 B = 0.005820 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.194579 B = 4809.498482 C = 5003.191948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.298 3.702 3 H 0.041 0.959 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.629 5.629 13 N -0.184 5.184 14 C -0.009 4.009 15 C -0.048 4.048 16 S -0.295 6.295 17 C -0.056 4.056 18 C -0.028 4.028 19 H 0.089 0.911 20 C -0.138 4.138 21 H 0.012 0.988 22 H 0.090 0.910 23 H 0.025 0.975 24 H 0.264 0.736 25 H 0.369 0.631 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.542 -1.995 12.806 13.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.196 3.804 3 H 0.059 0.941 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.366 5.366 13 N 0.006 4.994 14 C -0.204 4.204 15 C -0.199 4.199 16 S -0.069 6.069 17 C -0.204 4.204 18 C -0.049 4.049 19 H 0.107 0.893 20 C -0.198 4.198 21 H 0.031 0.969 22 H 0.108 0.892 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.205 0.795 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.686 -1.866 12.729 13.383 hybrid contribution 0.895 -0.763 -1.358 1.797 sum 4.581 -2.630 11.371 12.538 Atomic orbital electron populations 1.22207 0.99066 0.99188 1.00517 1.18529 0.90114 0.93505 0.78259 0.94089 1.21267 1.32177 1.13250 0.90210 0.92208 1.24858 0.94817 0.94993 0.98957 1.69898 1.36042 1.22581 1.23827 0.86378 0.78631 0.79548 0.82473 1.19786 1.20805 1.20815 1.48927 1.73503 1.07599 1.06580 1.73257 1.05420 1.27064 0.93657 1.23934 1.09784 0.91085 0.95578 1.23379 1.05009 0.97691 0.93844 1.87838 1.85433 1.26307 1.07322 1.24259 1.03188 0.91955 1.01023 1.19912 1.00150 0.95314 0.89547 0.89296 1.21868 0.98087 0.98096 1.01709 0.96878 0.89176 0.95556 0.92598 0.79455 0.88050 0.88638 0.87563 0.88959 0.91309 0.92543 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.29 37.16 0.35 -3.37 16 2 C 0.30 7.56 3.23 -69.08 -0.22 7.33 16 3 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.53 -14.16 8.74 -34.44 -0.30 -14.46 16 5 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.58 11.32 55.43 0.63 -23.96 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.63 -13.77 6.02 -5.88 -0.04 -13.81 16 13 N -0.18 -3.67 11.37 35.70 0.41 -3.26 16 14 C -0.01 -0.14 6.36 -78.70 -0.50 -0.64 16 15 C -0.05 -0.72 6.44 36.60 0.24 -0.48 16 16 S -0.29 -4.03 23.30 -107.50 -2.50 -6.54 16 17 C -0.06 -0.60 6.98 37.87 0.26 -0.33 16 18 C -0.03 -0.35 3.08 -91.44 -0.28 -0.64 16 19 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 20 C -0.14 -1.62 8.88 37.16 0.33 -1.29 16 21 H 0.01 0.29 8.14 -51.92 -0.42 -0.13 16 22 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.37 7.57 6.82 -182.59 -1.25 6.32 16 26 H 0.10 1.57 7.09 -51.93 -0.37 1.20 16 27 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.09 0.87 7.85 -51.93 -0.41 0.46 16 30 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 31 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 278.34 15.07 4.19 4.19 Total: -1.00 -27.92 278.34 -8.24 -36.16 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.68 Total: 3.72 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.23 Total: -12.18 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 1.00 Total: -41.02 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: -4.03 SS G_CDS: -2.50 Total: -6.54 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.92 -8.24 -36.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388791787.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.471 kcal (2) G-P(sol) polarization free energy of solvation -27.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds