Wall clock time and date at job start Mon Mar 30 2020 03:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47256 * 2 1 4 4 C 1.50705 * 109.46940 * 239.99896 * 2 1 3 5 5 H 1.07999 * 119.99877 * 240.00078 * 4 2 1 6 6 C 1.37877 * 119.99647 * 60.00210 * 4 2 1 7 7 N 1.31516 * 120.00549 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99584 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47352 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47256 * 119.99649 * 8 6 4 11 11 H 1.48498 * 109.46921 * 239.99669 * 8 6 4 12 12 N 1.46498 * 109.47070 * 120.00118 * 2 1 3 13 13 N 1.40109 * 119.99760 * 269.71824 * 12 2 1 14 14 C 1.28008 * 119.99837 * 180.27649 * 13 12 2 15 15 C 1.51902 * 123.27111 * 0.02826 * 14 13 12 16 16 S 1.83996 * 102.61651 * 204.62731 * 15 14 13 17 17 C 1.84051 * 94.48782 * 325.86846 * 16 15 14 18 18 C 1.49907 * 123.27054 * 179.73183 * 14 13 12 19 19 H 1.09007 * 108.82187 * 58.75724 * 18 14 13 20 20 C 1.52999 * 108.82520 * 300.51266 * 18 14 13 21 21 H 1.09008 * 109.46576 * 300.00118 * 1 2 3 22 22 H 1.08994 * 109.47252 * 59.99913 * 1 2 3 23 23 H 1.08993 * 109.47367 * 180.02562 * 1 2 3 24 24 H 0.96993 * 119.99987 * 180.02562 * 7 6 4 25 25 H 0.97001 * 120.00384 * 90.00306 * 12 2 1 26 26 H 1.08997 * 110.78166 * 322.90892 * 15 14 13 27 27 H 1.09005 * 110.77971 * 86.34449 * 15 14 13 28 28 H 1.08999 * 110.86576 * 151.85862 * 17 16 15 29 29 H 1.08999 * 110.87107 * 275.53791 * 17 16 15 30 30 H 1.08992 * 109.47696 * 59.99430 * 20 18 14 31 31 H 1.09007 * 109.47193 * 180.02562 * 20 18 14 32 32 H 1.09005 * 109.46819 * 299.99287 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 3.1462 -2.2870 -3.6038 10 1 1.1659 -1.5868 -4.8160 11 1 3.1464 -0.1874 -4.8165 12 7 2.0183 -0.6906 1.1961 13 7 2.2574 0.0310 2.3731 14 6 2.6891 -0.5716 3.4167 15 6 2.9678 -2.0642 3.4618 16 16 2.7991 -2.4506 5.2528 17 6 3.4717 -0.8317 5.8134 18 6 2.9750 0.1282 4.7112 19 1 2.0627 0.6143 5.0571 20 6 4.0390 1.2005 4.4683 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.7081 1.1608 -3.4844 25 1 2.1800 -1.6468 1.1722 26 1 2.2301 -2.6132 2.8766 27 1 3.9778 -2.2797 3.1131 28 1 3.0618 -0.5565 6.7852 29 1 4.5611 -0.8527 5.8420 30 1 3.6714 1.9175 3.7344 31 1 4.2554 1.7161 5.4040 32 1 4.9488 0.7312 4.0938 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388791787.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:00 Heat of formation + Delta-G solvation = 11.760128 kcal Electronic energy + Delta-G solvation = -13776.171665 eV Core-core repulsion = 11476.606281 eV Total energy + Delta-G solvation = -2299.565384 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.26972 -37.03014 -35.07582 -32.86804 -30.30311 -28.85036 -27.62780 -27.24083 -23.80550 -22.12705 -20.12521 -18.60608 -17.72714 -17.17595 -16.86770 -16.34580 -15.45616 -15.15060 -14.60666 -14.30095 -14.06741 -13.78595 -13.60616 -13.16719 -13.01767 -12.85809 -12.69745 -12.59320 -12.30417 -12.21845 -12.07870 -11.75071 -11.23788 -11.01495 -10.73880 -10.58654 -8.77442 -8.63978 -8.19395 -6.36143 0.76984 1.20151 1.41069 1.42319 1.47936 1.54015 2.13311 2.44720 3.09845 3.52648 3.71202 3.96635 4.09291 4.19796 4.44988 4.62072 4.68879 4.73160 4.77598 4.96217 5.04417 5.11526 5.20030 5.31845 5.40321 5.53364 5.76697 5.85106 6.17021 6.39547 6.83298 7.35615 7.75299 8.86083 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.042466 B = 0.005820 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.194579 B = 4809.498482 C = 5003.191948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.308 3.692 3 H 0.002 0.998 4 C -0.547 4.547 5 H 0.059 0.941 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.276 1.276 11 H -0.279 1.279 12 N -0.645 5.645 13 N -0.230 5.230 14 C 0.022 3.978 15 C -0.054 4.054 16 S -0.309 6.309 17 C -0.039 4.039 18 C -0.033 4.033 19 H 0.094 0.906 20 C -0.133 4.133 21 H 0.017 0.983 22 H 0.069 0.931 23 H 0.028 0.972 24 H 0.267 0.733 25 H 0.372 0.628 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.136 0.864 29 H 0.114 0.886 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.675 -2.655 14.394 15.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.205 3.795 3 H 0.020 0.980 4 C -0.586 4.586 5 H 0.078 0.922 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.202 1.202 11 H -0.205 1.205 12 N -0.382 5.382 13 N -0.038 5.038 14 C -0.175 4.175 15 C -0.205 4.205 16 S -0.083 6.083 17 C -0.187 4.187 18 C -0.055 4.055 19 H 0.113 0.887 20 C -0.192 4.192 21 H 0.036 0.964 22 H 0.087 0.913 23 H 0.047 0.953 24 H 0.076 0.924 25 H 0.210 0.790 26 H 0.110 0.890 27 H 0.124 0.876 28 H 0.154 0.846 29 H 0.132 0.868 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.822 -2.532 14.338 15.337 hybrid contribution 0.599 -0.549 -1.623 1.815 sum 5.421 -3.081 12.715 14.161 Atomic orbital electron populations 1.22026 0.98976 0.98942 0.99630 1.18099 0.90126 0.91620 0.79686 0.97985 1.21539 1.32420 1.13414 0.91193 0.92231 1.25695 0.94872 0.95630 1.01884 1.70017 1.36847 1.23754 1.24634 0.85337 0.78166 0.78456 0.78609 1.19196 1.20196 1.20457 1.48412 1.75583 1.07435 1.06820 1.73309 1.08945 1.27558 0.94009 1.24823 1.04706 0.92343 0.95593 1.23385 1.05322 0.96488 0.95338 1.87962 1.85956 1.28694 1.05719 1.24426 1.04517 0.88642 1.01128 1.20114 1.01104 0.95994 0.88281 0.88744 1.21821 0.97275 0.97290 1.02859 0.96384 0.91258 0.95300 0.92378 0.79042 0.88986 0.87578 0.84575 0.86800 0.93740 0.89054 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.94 9.29 71.98 0.67 -6.27 16 2 C 0.31 16.22 3.23 44.25 0.14 16.37 16 3 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 4 C -0.55 -29.84 8.74 25.60 0.22 -29.62 16 5 H 0.06 3.17 7.79 -2.91 -0.02 3.15 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -51.81 11.32 21.45 0.24 -51.57 16 8 Si 0.97 42.59 29.54 68.60 2.03 44.62 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 12 N -0.64 -29.02 6.02 -172.52 -1.04 -30.06 16 13 N -0.23 -9.32 11.37 -40.87 -0.46 -9.78 16 14 C 0.02 0.69 6.36 46.67 0.30 0.99 16 15 C -0.05 -1.55 6.44 71.62 0.46 -1.09 16 16 S -0.31 -7.67 23.30 -56.49 -1.32 -8.98 16 17 C -0.04 -0.68 6.98 72.44 0.51 -0.17 16 18 C -0.03 -0.76 3.08 -11.33 -0.03 -0.80 16 19 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 20 C -0.13 -2.77 8.88 71.98 0.64 -2.13 16 21 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 22 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 23 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.27 14.22 8.31 -92.71 -0.77 13.44 16 25 H 0.37 15.66 6.82 -213.31 -1.46 14.20 16 26 H 0.09 2.83 7.09 -2.39 -0.02 2.81 16 27 H 0.11 2.83 8.14 -2.38 -0.02 2.81 16 28 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.11 1.57 7.85 -2.39 -0.02 1.56 16 30 H 0.04 1.16 8.10 -2.39 -0.02 1.14 16 31 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -61.21 278.34 2.45 -58.76 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -0.35 Total: 18.23 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 3.35 Total: -21.22 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -1.26 Total: -91.41 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: -7.67 SS G_CDS: -1.32 Total: -8.98 kcal Total: -61.21 2.45 -58.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388791787.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.525 kcal (2) G-P(sol) polarization free energy of solvation -61.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds