Wall clock time and date at job start Mon Mar 30 2020 03:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 110.57996 * 2 1 4 4 C 1.54159 * 110.65600 * 237.02962 * 2 1 3 5 5 N 1.46943 * 104.14892 * 241.47420 * 4 2 1 6 6 C 1.29695 * 109.91974 * 0.12300 * 5 4 2 7 7 S 1.76197 * 122.84360 * 179.97438 * 6 5 4 8 8 C 1.81000 * 99.99848 * 359.90729 * 7 6 5 9 9 C 1.53005 * 109.47090 * 179.97438 * 8 7 6 10 10 C 1.53007 * 109.46885 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.46751 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00483 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99971 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00299 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99711 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46872 * 90.00450 * 15 13 11 17 17 H 1.48501 * 109.46937 * 209.99737 * 15 13 11 18 18 H 1.48488 * 109.47371 * 330.00198 * 15 13 11 19 19 N 1.36878 * 114.26799 * 359.86424 * 6 5 4 20 20 H 1.09003 * 109.46890 * 182.97476 * 1 2 3 21 21 H 1.08998 * 109.47494 * 302.97403 * 1 2 3 22 22 H 1.09004 * 109.47600 * 62.97709 * 1 2 3 23 23 H 1.09002 * 110.51798 * 0.18168 * 4 2 1 24 24 H 1.08998 * 110.51864 * 122.76949 * 4 2 1 25 25 H 1.09001 * 109.47343 * 300.00099 * 8 7 6 26 26 H 1.09004 * 109.47224 * 60.00238 * 8 7 6 27 27 H 1.09001 * 109.47175 * 300.00006 * 9 8 7 28 28 H 1.09003 * 109.46961 * 60.00574 * 9 8 7 29 29 H 1.09001 * 109.47090 * 299.99900 * 10 9 8 30 30 H 1.08990 * 109.47146 * 60.00155 * 10 9 8 31 31 H 0.97000 * 120.00706 * 179.97438 * 14 13 11 32 32 H 0.97001 * 125.81626 * 180.08395 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0205 0.0000 4 6 2.0738 -0.7850 -1.2102 5 7 2.8372 -1.8876 -0.6095 6 6 2.7807 -1.8109 0.6839 7 16 3.5799 -2.9679 1.7456 8 6 4.3344 -4.0569 0.5124 9 6 5.1059 -5.1722 1.2208 10 6 5.7443 -6.0924 0.1782 11 6 6.5036 -7.1913 0.8759 12 1 6.5289 -7.2294 1.9550 13 6 7.1671 -8.1476 0.1368 14 7 7.8302 -9.1063 0.7456 15 14 7.1241 -8.0813 -1.7296 16 1 8.2637 -7.2667 -2.2223 17 1 7.2271 -9.4582 -2.2762 18 1 5.8475 -7.4666 -2.1738 19 7 2.0494 -0.7534 1.1534 20 1 -0.3633 -1.0263 0.0533 21 1 -0.3634 0.5593 0.8621 22 1 -0.3634 0.4669 -0.9155 23 1 1.2533 -1.1728 -1.8140 24 1 2.7256 -0.1534 -1.8137 25 1 3.5550 -4.4937 -0.1121 26 1 5.0190 -3.4811 -0.1106 27 1 5.8854 -4.7351 1.8449 28 1 4.4217 -5.7482 1.8439 29 1 4.9651 -6.5296 -0.4462 30 1 6.4285 -5.5163 -0.4446 31 1 8.2967 -9.7793 0.2256 32 1 1.8990 -0.5371 2.0870 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395769941.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:38 Heat of formation + Delta-G solvation = -10.840405 kcal Electronic energy + Delta-G solvation = -13166.321861 eV Core-core repulsion = 10865.776444 eV Total energy + Delta-G solvation = -2300.545416 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.86441 -36.41828 -34.19162 -33.37101 -32.22063 -29.92722 -27.40197 -25.03185 -22.60264 -22.35606 -21.68412 -19.30683 -18.79463 -16.91008 -16.56726 -16.25464 -16.08991 -15.28501 -15.10534 -14.57423 -14.10026 -13.96148 -13.79029 -13.38094 -13.08601 -12.92975 -12.76273 -12.66116 -12.46379 -11.87617 -11.71282 -11.57586 -11.35174 -11.31918 -10.84903 -10.75209 -9.35379 -8.78957 -8.28201 -6.32541 0.22779 1.14914 1.24638 1.38250 1.39731 1.52110 2.37805 2.67566 3.07340 3.53144 3.98675 4.02510 4.04399 4.15427 4.46337 4.54786 4.58558 4.67585 4.76475 4.84244 4.92169 4.99516 5.03781 5.24443 5.32014 5.44435 5.53190 5.65261 6.28365 6.53351 6.75090 6.83860 7.32119 8.88494 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.053799 B = 0.004798 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.331648 B = 5834.529914 C = 6250.909390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.109 3.891 3 H 0.100 0.900 4 C 0.024 3.976 5 N -0.615 5.615 6 C 0.350 3.650 7 S -0.045 6.045 8 C -0.077 4.077 9 C -0.082 4.082 10 C -0.005 4.005 11 C -0.533 4.533 12 H 0.035 0.965 13 C 0.005 3.995 14 N -0.951 5.951 15 Si 0.949 3.051 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.247 1.247 19 N -0.729 5.729 20 H 0.044 0.956 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.023 0.977 30 H 0.022 0.978 31 H 0.267 0.733 32 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.931 20.741 -2.052 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.001 3.999 3 H 0.118 0.882 4 C -0.108 4.108 5 N -0.351 5.351 6 C -0.037 4.037 7 S 0.187 5.813 8 C -0.226 4.226 9 C -0.122 4.122 10 C -0.044 4.044 11 C -0.571 4.571 12 H 0.053 0.947 13 C -0.191 4.191 14 N -0.592 5.592 15 Si 0.772 3.228 16 H -0.191 1.191 17 H -0.209 1.209 18 H -0.171 1.171 19 N -0.376 5.376 20 H 0.063 0.937 21 H 0.091 0.909 22 H 0.105 0.895 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -14.478 20.090 -1.717 24.823 hybrid contribution -0.154 0.236 -1.042 1.080 sum -14.632 20.326 -2.759 25.196 Atomic orbital electron populations 1.22098 0.92826 1.02038 1.03910 1.22367 0.95796 0.96415 0.85309 0.88200 1.23268 0.97948 0.92346 0.97272 1.74944 1.29219 1.26480 1.04412 1.25121 0.92318 0.91447 0.94837 1.85621 1.60441 1.25687 1.09583 1.23464 1.02436 0.98065 0.98685 1.21132 0.98399 0.94361 0.98260 1.19484 0.95573 0.93971 0.95386 1.21468 1.31253 1.10472 0.93944 0.94654 1.25990 0.94300 0.94579 1.04277 1.70060 1.35016 1.16008 1.38080 0.85671 0.80151 0.77649 0.79287 1.19112 1.20915 1.17063 1.45947 1.54793 1.27283 1.09556 0.93699 0.90903 0.89521 0.89426 0.89400 0.89375 0.89273 0.91967 0.92001 0.95885 0.95975 0.92452 0.73478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.42 71.98 0.68 -1.09 16 2 C 0.11 1.70 4.42 45.24 0.20 1.90 16 3 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 4 C 0.02 0.51 7.68 86.69 0.67 1.18 16 5 N -0.62 -17.96 10.72 -344.99 -3.70 -21.66 16 6 C 0.35 9.25 8.03 179.90 1.44 10.69 16 7 S -0.05 -1.27 22.31 -56.49 -1.26 -2.53 16 8 C -0.08 -2.56 5.02 71.98 0.36 -2.20 16 9 C -0.08 -3.22 5.16 30.60 0.16 -3.06 16 10 C 0.00 -0.23 4.04 29.85 0.12 -0.11 16 11 C -0.53 -31.10 9.66 25.60 0.25 -30.85 16 12 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 13 C 0.01 0.32 5.47 84.66 0.46 0.78 16 14 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 15 Si 0.95 44.86 27.47 68.60 1.88 46.75 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 19 N -0.73 -13.96 6.22 -324.09 -2.02 -15.97 16 20 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 21 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.09 1.73 7.73 -2.39 -0.02 1.71 16 24 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 26 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 27 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 30 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 31 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 32 H 0.42 6.25 8.96 -92.71 -0.83 5.42 16 Total: -1.00 -67.90 281.38 -0.24 -68.14 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.21 Total: 8.00 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 4.34 Total: -22.76 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -5.42 Total: -97.61 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.75 kcal Atomic # 16 Polarization: -1.27 SS G_CDS: -1.26 Total: -2.53 kcal Total: -67.90 -0.24 -68.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395769941.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.302 kcal (2) G-P(sol) polarization free energy of solvation -67.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds