Wall clock time and date at job start Mon Mar 30 2020 03:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 N 1.40000 * 126.08744 * 2 1 4 4 C 1.32038 * 109.00937 * 180.02562 * 3 2 1 5 5 C 1.48441 * 125.60820 * 180.02562 * 4 3 2 6 6 C 1.39317 * 120.11880 * 179.70465 * 5 4 3 7 7 C 1.38028 * 119.87897 * 179.70050 * 6 5 4 8 8 C 1.38315 * 120.11672 * 0.56962 * 7 6 5 9 9 C 1.38317 * 120.24200 * 359.72189 * 8 7 6 10 10 C 1.38023 * 120.12183 * 359.97438 * 9 8 7 11 11 C 1.39708 * 108.78146 * 0.02562 * 4 3 2 12 12 C 1.37527 * 126.08879 * 180.02562 * 2 1 3 13 13 C 1.40275 * 126.54490 * 359.73333 * 12 2 1 14 14 H 1.08002 * 120.00075 * 340.91239 * 13 12 2 15 15 C 1.40135 * 120.00397 * 160.90767 * 13 12 2 16 16 N 1.30770 * 120.00539 * 164.43082 * 15 13 12 17 17 Si 1.86807 * 119.99827 * 344.43639 * 15 13 12 18 18 H 1.48502 * 109.47035 * 91.23076 * 17 15 13 19 19 H 1.48498 * 109.46816 * 211.23215 * 17 15 13 20 20 H 1.48497 * 109.46829 * 331.23187 * 17 15 13 21 21 H 1.09004 * 109.46822 * 269.99837 * 1 2 3 22 22 H 1.09001 * 109.46976 * 29.99892 * 1 2 3 23 23 H 1.08992 * 109.46993 * 149.99771 * 1 2 3 24 24 H 1.07996 * 120.05828 * 359.97438 * 6 5 4 25 25 H 1.08000 * 119.93894 * 180.29456 * 7 6 5 26 26 H 1.07996 * 119.88022 * 179.70336 * 8 7 6 27 27 H 1.07997 * 119.94151 * 179.97438 * 9 8 7 28 28 H 1.07995 * 120.06647 * 180.02562 * 10 9 8 29 29 H 1.08003 * 126.26320 * 180.02562 * 11 4 3 30 30 H 0.96992 * 120.00607 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2897 1.1314 0.0000 4 6 3.5519 0.7436 -0.0006 5 6 4.7325 1.6434 -0.0002 6 6 6.0190 1.1088 0.0053 7 6 7.1132 1.9500 -0.0006 8 6 6.9342 3.3215 -0.0002 9 6 5.6592 3.8577 0.0004 10 6 4.5580 3.0257 0.0001 11 6 3.5934 -0.6529 -0.0015 12 6 2.2752 -1.1114 -0.0005 13 6 1.8565 -2.4502 0.0041 14 1 0.8529 -2.7010 0.3144 15 6 2.7404 -3.4622 -0.3938 16 7 2.4755 -4.7108 -0.1095 17 14 4.2972 -3.0275 -1.3303 18 1 5.4091 -2.8129 -0.3697 19 1 4.6467 -4.1382 -2.2520 20 1 4.0732 -1.7860 -2.1137 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8899 -0.5138 24 1 6.1597 0.0380 0.0098 25 1 8.1110 1.5366 -0.0011 26 1 7.7932 3.9762 0.0000 27 1 5.5251 4.9293 0.0012 28 1 3.5628 3.4453 0.0001 29 1 4.4828 -1.2655 -0.0018 30 1 3.0874 -5.4113 -0.3846 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409443981.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:10 Heat of formation + Delta-G solvation = 85.388950 kcal Electronic energy + Delta-G solvation = -14843.871775 eV Core-core repulsion = 12412.055225 eV Total energy + Delta-G solvation = -2431.816550 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.52989 -38.27767 -33.71911 -32.65229 -30.64767 -30.10267 -29.66167 -25.55573 -24.98438 -22.34046 -22.01459 -19.94287 -18.73028 -17.09140 -16.35684 -15.64502 -14.78763 -14.43631 -14.15818 -13.79445 -13.61652 -13.02125 -12.89923 -12.60804 -12.35011 -11.87938 -11.61533 -11.46107 -10.98809 -10.89752 -10.69761 -10.30857 -9.82820 -9.45959 -9.12451 -8.92129 -8.58152 -7.66827 -7.11733 -7.01437 -4.68043 1.52720 1.77709 2.93672 3.16521 3.30414 3.43494 3.80457 3.81902 4.01056 4.58363 5.06881 5.22060 5.26498 5.29405 5.48400 5.74506 5.88068 5.90286 6.01465 6.16668 6.33018 6.34744 6.67354 6.74469 6.78886 6.82219 6.95130 7.20685 7.28908 7.39337 7.74187 8.05698 8.15925 8.47877 8.82766 9.19695 10.00208 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.027981 B = 0.009297 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.453958 B = 3011.084278 C = 3910.168000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.421 5.421 3 N -0.362 5.362 4 C 0.118 3.882 5 C 0.014 3.986 6 C -0.105 4.105 7 C -0.123 4.123 8 C -0.133 4.133 9 C -0.126 4.126 10 C -0.102 4.102 11 C -0.404 4.404 12 C 0.257 3.743 13 C -0.449 4.449 14 H 0.092 0.908 15 C 0.101 3.899 16 N -0.805 5.805 17 Si 0.919 3.081 18 H -0.268 1.268 19 H -0.296 1.296 20 H -0.241 1.241 21 H 0.049 0.951 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.124 0.876 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.062 8.410 -1.047 9.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.208 5.208 3 N -0.185 5.185 4 C -0.042 4.042 5 C 0.013 3.987 6 C -0.125 4.125 7 C -0.141 4.141 8 C -0.151 4.151 9 C -0.144 4.144 10 C -0.122 4.122 11 C -0.434 4.434 12 C 0.138 3.862 13 C -0.484 4.484 14 H 0.110 0.890 15 C -0.121 4.121 16 N -0.430 5.430 17 Si 0.746 3.254 18 H -0.194 1.194 19 H -0.224 1.224 20 H -0.164 1.164 21 H 0.068 0.932 22 H 0.086 0.914 23 H 0.096 0.904 24 H 0.142 0.858 25 H 0.137 0.863 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.144 0.856 29 H 0.138 0.862 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.088 9.178 -1.034 10.101 hybrid contribution 1.069 -0.854 -0.260 1.393 sum 5.157 8.324 -1.294 9.877 Atomic orbital electron populations 1.21315 0.76608 1.02508 1.01123 1.48362 1.04499 1.03241 1.64725 1.77035 1.00039 1.08422 1.32996 1.19917 0.90943 0.92472 1.00897 1.18147 0.90963 0.91890 0.97751 1.21217 0.91549 1.00215 0.99495 1.20994 0.98307 0.93530 1.01300 1.21060 0.96897 0.95111 1.02080 1.21020 0.92612 0.99304 1.01455 1.21270 0.99092 0.92656 0.99147 1.20992 0.95584 0.92808 1.34012 1.18707 0.88397 0.87870 0.91212 1.18433 1.01668 0.87024 1.41313 0.89016 1.25892 0.99164 0.93964 0.93091 1.69581 1.37188 1.01189 1.35038 0.86238 0.80411 0.78656 0.80116 1.19395 1.22370 1.16394 0.93236 0.91422 0.90397 0.85844 0.86287 0.86646 0.86450 0.85589 0.86164 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.42 11.25 59.85 0.67 3.09 16 2 N -0.42 -10.27 4.09 -65.41 -0.27 -10.54 16 3 N -0.36 -8.95 12.17 33.27 0.40 -8.54 16 4 C 0.12 2.86 6.95 -83.03 -0.58 2.29 16 5 C 0.01 0.30 5.88 -104.89 -0.62 -0.32 16 6 C -0.11 -1.92 9.56 -39.26 -0.38 -2.30 16 7 C -0.12 -1.84 10.03 -39.63 -0.40 -2.23 16 8 C -0.13 -1.82 10.04 -39.52 -0.40 -2.22 16 9 C -0.13 -1.84 10.03 -39.63 -0.40 -2.24 16 10 C -0.10 -1.83 9.68 -39.26 -0.38 -2.21 16 11 C -0.40 -10.36 7.47 -38.54 -0.29 -10.65 16 12 C 0.26 6.76 6.30 -84.05 -0.53 6.23 16 13 C -0.45 -11.98 9.38 -38.10 -0.36 -12.34 16 14 H 0.09 2.48 7.82 -52.49 -0.41 2.07 16 15 C 0.10 2.61 5.51 -17.29 -0.10 2.52 16 16 N -0.80 -20.94 13.93 55.56 0.77 -20.17 16 17 Si 0.92 21.06 24.53 -169.99 -4.17 16.89 16 18 H -0.27 -5.96 6.69 56.52 0.38 -5.58 16 19 H -0.30 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.24 -5.79 6.56 56.52 0.37 -5.42 16 21 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 23 H 0.08 1.41 7.68 -51.93 -0.40 1.01 16 24 H 0.12 2.27 6.99 -52.49 -0.37 1.91 16 25 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 26 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 27 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.13 2.25 7.83 -52.49 -0.41 1.83 16 29 H 0.12 3.00 3.46 -52.48 -0.18 2.82 16 30 H 0.29 6.80 8.29 -40.82 -0.34 6.46 16 LS Contribution 259.68 15.07 3.91 3.91 Total: -1.00 -29.73 259.68 -6.15 -35.88 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -3.07 Total: 2.93 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -3.74 Total: -20.37 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.91 Total: -39.25 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.17 Total: 16.89 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.73 -6.15 -35.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409443981.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.273 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds