Wall clock time and date at job start Mon Mar 30 2020 03:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 N 1.40000 * 126.08744 * 2 1 4 4 C 1.32038 * 109.00937 * 180.02562 * 3 2 1 5 5 C 1.48441 * 125.60820 * 180.02562 * 4 3 2 6 6 C 1.39317 * 120.11880 * 179.70465 * 5 4 3 7 7 C 1.38028 * 119.87897 * 179.70050 * 6 5 4 8 8 C 1.38315 * 120.11672 * 0.56962 * 7 6 5 9 9 C 1.38317 * 120.24200 * 359.72189 * 8 7 6 10 10 C 1.38023 * 120.12183 * 359.97438 * 9 8 7 11 11 C 1.39708 * 108.78146 * 0.02562 * 4 3 2 12 12 C 1.37527 * 126.08879 * 180.02562 * 2 1 3 13 13 C 1.40275 * 126.54490 * 359.73333 * 12 2 1 14 14 H 1.08002 * 120.00075 * 340.91239 * 13 12 2 15 15 C 1.40135 * 120.00397 * 160.90767 * 13 12 2 16 16 N 1.30770 * 120.00539 * 164.43082 * 15 13 12 17 17 Si 1.86807 * 119.99827 * 344.43639 * 15 13 12 18 18 H 1.48502 * 109.47035 * 91.23076 * 17 15 13 19 19 H 1.48498 * 109.46816 * 211.23215 * 17 15 13 20 20 H 1.48497 * 109.46829 * 331.23187 * 17 15 13 21 21 H 1.09004 * 109.46822 * 269.99837 * 1 2 3 22 22 H 1.09001 * 109.46976 * 29.99892 * 1 2 3 23 23 H 1.08992 * 109.46993 * 149.99771 * 1 2 3 24 24 H 1.07996 * 120.05828 * 359.97438 * 6 5 4 25 25 H 1.08000 * 119.93894 * 180.29456 * 7 6 5 26 26 H 1.07996 * 119.88022 * 179.70336 * 8 7 6 27 27 H 1.07997 * 119.94151 * 179.97438 * 9 8 7 28 28 H 1.07995 * 120.06647 * 180.02562 * 10 9 8 29 29 H 1.08003 * 126.26320 * 180.02562 * 11 4 3 30 30 H 0.96992 * 120.00607 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2897 1.1314 0.0000 4 6 3.5519 0.7436 -0.0006 5 6 4.7325 1.6434 -0.0002 6 6 6.0190 1.1088 0.0053 7 6 7.1132 1.9500 -0.0006 8 6 6.9342 3.3215 -0.0002 9 6 5.6592 3.8577 0.0004 10 6 4.5580 3.0257 0.0001 11 6 3.5934 -0.6529 -0.0015 12 6 2.2752 -1.1114 -0.0005 13 6 1.8565 -2.4502 0.0041 14 1 0.8529 -2.7010 0.3144 15 6 2.7404 -3.4622 -0.3938 16 7 2.4755 -4.7108 -0.1095 17 14 4.2972 -3.0275 -1.3303 18 1 5.4091 -2.8129 -0.3697 19 1 4.6467 -4.1382 -2.2520 20 1 4.0732 -1.7860 -2.1137 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8899 -0.5138 24 1 6.1597 0.0380 0.0098 25 1 8.1110 1.5366 -0.0011 26 1 7.7932 3.9762 0.0000 27 1 5.5251 4.9293 0.0012 28 1 3.5628 3.4453 0.0001 29 1 4.4828 -1.2655 -0.0018 30 1 3.0874 -5.4113 -0.3846 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409443981.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:10 Heat of formation + Delta-G solvation = 67.190067 kcal Electronic energy + Delta-G solvation = -14844.660938 eV Core-core repulsion = 12412.055225 eV Total energy + Delta-G solvation = -2432.605713 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.31191 -39.63226 -35.68212 -34.29240 -32.08258 -31.65608 -31.28755 -27.29183 -26.81090 -23.79760 -23.33052 -21.77370 -20.37912 -18.96023 -18.04601 -17.13379 -16.24959 -16.06614 -15.87149 -15.39080 -15.36916 -14.37667 -14.27720 -14.06291 -14.01340 -13.69669 -13.29978 -13.09176 -12.78278 -12.45960 -11.99681 -11.94825 -11.71205 -11.33835 -10.99881 -10.49845 -9.81562 -9.48017 -8.99166 -8.86855 -6.70643 0.16883 0.53964 1.06108 1.29203 1.45491 1.57981 2.08750 2.12549 2.18867 2.98847 3.17705 3.70607 4.03718 4.18649 4.21768 4.33938 4.50887 4.61652 4.64664 4.67808 4.84590 4.87739 5.03807 5.09535 5.23498 5.31028 5.57222 5.62204 5.69794 5.88374 6.09670 6.13685 6.25010 6.50103 6.90121 7.29777 8.07497 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.027981 B = 0.009297 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.453958 B = 3011.084278 C = 3910.168000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.431 5.431 3 N -0.374 5.374 4 C 0.114 3.886 5 C -0.030 4.030 6 C -0.121 4.121 7 C -0.118 4.118 8 C -0.114 4.114 9 C -0.119 4.119 10 C -0.112 4.112 11 C -0.424 4.424 12 C 0.238 3.762 13 C -0.470 4.470 14 H 0.075 0.925 15 C 0.071 3.929 16 N -0.829 5.829 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.275 1.275 20 H -0.263 1.263 21 H 0.064 0.936 22 H 0.091 0.909 23 H 0.082 0.918 24 H 0.111 0.889 25 H 0.153 0.847 26 H 0.161 0.839 27 H 0.153 0.847 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.421 10.427 -1.356 12.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.219 5.219 3 N -0.197 5.197 4 C -0.047 4.047 5 C -0.032 4.032 6 C -0.141 4.141 7 C -0.136 4.136 8 C -0.133 4.133 9 C -0.137 4.137 10 C -0.132 4.132 11 C -0.454 4.454 12 C 0.118 3.882 13 C -0.506 4.506 14 H 0.093 0.907 15 C -0.148 4.148 16 N -0.456 5.456 17 Si 0.793 3.207 18 H -0.185 1.185 19 H -0.202 1.202 20 H -0.187 1.187 21 H 0.082 0.918 22 H 0.109 0.891 23 H 0.100 0.900 24 H 0.129 0.871 25 H 0.170 0.830 26 H 0.178 0.822 27 H 0.171 0.829 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.423 11.180 -1.335 12.962 hybrid contribution 0.369 -1.334 -0.135 1.391 sum 6.791 9.845 -1.469 12.050 Atomic orbital electron populations 1.21617 0.74151 1.03883 1.02511 1.48780 1.06128 1.02664 1.64289 1.76969 1.00543 1.08734 1.33439 1.20525 0.91997 0.92733 0.99397 1.18265 0.90443 0.92696 1.01791 1.21293 0.91916 1.00326 1.00571 1.21386 0.98617 0.93965 0.99612 1.21606 0.97929 0.95085 0.98649 1.21421 0.91929 1.00732 0.99568 1.21315 1.00111 0.91942 0.99825 1.21203 0.95508 0.93863 1.34780 1.18860 0.89365 0.88229 0.91754 1.18452 1.01398 0.87827 1.42919 0.90712 1.26445 1.01158 0.93807 0.93418 1.69574 1.38460 1.01783 1.35748 0.85489 0.78068 0.77923 0.79236 1.18463 1.20159 1.18718 0.91776 0.89075 0.89975 0.87084 0.82952 0.82150 0.82890 0.86511 0.86037 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.57 11.25 127.77 1.44 6.01 16 2 N -0.43 -21.50 4.09 -360.86 -1.47 -22.97 16 3 N -0.37 -18.81 12.17 -48.65 -0.59 -19.40 16 4 C 0.11 5.67 6.95 42.19 0.29 5.96 16 5 C -0.03 -1.23 5.88 -20.04 -0.12 -1.35 16 6 C -0.12 -4.31 9.56 22.48 0.21 -4.09 16 7 C -0.12 -3.07 10.03 22.24 0.22 -2.85 16 8 C -0.11 -2.54 10.04 22.31 0.22 -2.32 16 9 C -0.12 -3.00 10.03 22.24 0.22 -2.78 16 10 C -0.11 -3.87 9.68 22.48 0.22 -3.65 16 11 C -0.42 -22.31 7.47 22.95 0.17 -22.14 16 12 C 0.24 12.91 6.30 39.07 0.25 13.16 16 13 C -0.47 -26.00 9.38 23.23 0.22 -25.78 16 14 H 0.07 4.24 7.82 -2.91 -0.02 4.22 16 15 C 0.07 3.77 5.51 85.31 0.47 4.24 16 16 N -0.83 -43.69 13.93 21.86 0.30 -43.38 16 17 Si 0.97 43.87 24.53 68.60 1.68 45.56 16 18 H -0.26 -11.24 6.69 99.48 0.67 -10.58 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.26 -12.77 6.56 99.48 0.65 -12.12 16 21 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 22 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 23 H 0.08 3.03 7.68 -2.39 -0.02 3.01 16 24 H 0.11 4.10 6.99 -2.91 -0.02 4.08 16 25 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 26 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 27 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 28 H 0.12 4.12 7.83 -2.91 -0.02 4.10 16 29 H 0.12 6.19 3.46 -2.91 -0.01 6.18 16 30 H 0.30 14.13 8.29 -92.71 -0.77 13.36 16 Total: -1.00 -65.96 259.68 4.79 -61.17 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 1.05 Total: 14.62 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: 3.82 Total: -35.59 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -1.76 Total: -85.76 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.68 Total: 45.56 kcal Total: -65.96 4.79 -61.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409443981.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.360 kcal (2) G-P(sol) polarization free energy of solvation -65.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds