Wall clock time and date at job start Mon Mar 30 2020 03:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00233 * 2 1 4 4 H 1.48498 * 109.47041 * 270.00561 * 3 2 1 5 5 H 1.48502 * 109.46808 * 29.99991 * 3 2 1 6 6 H 1.48496 * 109.47432 * 150.00638 * 3 2 1 7 7 C 1.37884 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99826 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99957 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47363 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47345 * 179.97438 * 10 9 7 12 12 O 1.42893 * 109.47053 * 180.02562 * 11 10 9 13 13 C 1.42904 * 113.99946 * 180.02562 * 12 11 10 14 14 H 1.08991 * 109.73020 * 30.65955 * 13 12 11 15 15 C 1.53363 * 109.77377 * 151.33629 * 13 12 11 16 16 O 1.42894 * 109.27382 * 171.92999 * 15 13 12 17 17 C 1.42888 * 114.49857 * 295.06746 * 16 15 13 18 18 C 1.53360 * 109.28193 * 64.93240 * 17 16 15 19 19 C 1.51509 * 109.73574 * 269.99827 * 13 12 11 20 20 O 1.20757 * 121.21837 * 11.91443 * 19 13 12 21 21 H 0.96998 * 120.00221 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47345 * 59.99493 * 9 7 2 23 23 H 1.09001 * 109.46888 * 300.00090 * 9 7 2 24 24 H 1.09001 * 109.46583 * 60.00021 * 10 9 7 25 25 H 1.08995 * 109.46920 * 300.00435 * 10 9 7 26 26 H 1.08999 * 109.46725 * 59.99866 * 11 10 9 27 27 H 1.09001 * 109.47009 * 300.00544 * 11 10 9 28 28 H 1.09003 * 109.50573 * 291.86900 * 15 13 12 29 29 H 1.09002 * 109.50516 * 51.95536 * 15 13 12 30 30 H 1.09003 * 109.50235 * 304.98966 * 17 16 15 31 31 H 1.09003 * 109.50487 * 184.87518 * 17 16 15 32 32 H 1.08996 * 109.74380 * 188.09366 * 18 17 16 33 33 H 1.09003 * 109.73312 * 67.38560 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6366 -0.0022 12 8 6.0278 -3.9838 -0.0027 13 6 7.4524 -4.0967 -0.0033 14 1 7.8891 -3.2461 0.5199 15 6 7.8699 -5.4002 0.6885 16 8 9.2751 -5.5956 0.5180 17 6 9.6848 -5.8009 -0.8354 18 6 9.4092 -4.5288 -1.6465 19 6 7.9618 -4.1368 -1.4296 20 8 7.2409 -3.8656 -2.3596 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6804 0.8888 23 1 3.8744 -0.6801 -0.8911 24 1 3.6578 -3.1506 -0.8908 25 1 3.6585 -3.1502 0.8892 26 1 5.9155 -2.1224 0.8873 27 1 5.9141 -2.1230 -0.8927 28 1 7.6374 -5.3386 1.7517 29 1 7.3292 -6.2366 0.2456 30 1 9.1254 -6.6332 -1.2627 31 1 10.7510 -6.0261 -0.8628 32 1 9.5836 -4.7220 -2.7050 33 1 10.0631 -3.7261 -1.3055 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686528794.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:52 Heat of formation + Delta-G solvation = -162.561558 kcal Electronic energy + Delta-G solvation = -15720.495201 eV Core-core repulsion = 12938.325039 eV Total energy + Delta-G solvation = -2782.170161 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.46567 -38.94073 -38.67824 -35.92687 -33.88887 -32.64960 -31.44256 -28.85092 -25.05231 -24.94423 -24.33541 -22.06295 -20.66365 -19.02506 -18.18991 -17.74165 -17.53807 -16.87148 -16.37274 -16.28334 -16.09065 -15.24354 -15.19659 -14.86572 -14.53860 -14.24484 -13.69100 -13.44264 -13.24375 -12.89818 -12.71782 -12.26728 -12.05483 -11.96682 -11.75829 -11.65371 -11.41810 -11.30143 -10.87901 -10.79563 -10.11197 -8.31975 -6.37602 0.73146 1.35032 1.37073 1.49153 2.25447 2.34657 2.69786 3.02817 3.03694 3.61205 3.73008 3.91260 3.94533 4.08108 4.16392 4.22817 4.46019 4.49198 4.61096 4.68145 4.76531 4.79393 4.85120 4.91441 4.97568 5.37762 5.49398 5.59848 5.85398 6.09528 6.24955 6.37663 6.69895 7.26831 8.85145 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.054856 B = 0.004760 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.309247 B = 5881.552385 C = 6022.470692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.242 1.242 7 C -0.539 4.539 8 H 0.029 0.971 9 C -0.006 4.006 10 C -0.094 4.094 11 C 0.072 3.928 12 O -0.382 6.382 13 C -0.003 4.003 14 H 0.121 0.879 15 C 0.079 3.921 16 O -0.373 6.373 17 C 0.061 3.939 18 C -0.195 4.195 19 C 0.324 3.676 20 O -0.481 6.481 21 H 0.268 0.732 22 H 0.032 0.968 23 H 0.018 0.982 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.129 0.871 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.142 0.858 32 H 0.109 0.891 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.103 -9.227 0.923 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.165 1.165 7 C -0.577 4.577 8 H 0.047 0.953 9 C -0.044 4.044 10 C -0.132 4.132 11 C -0.004 4.004 12 O -0.301 6.301 13 C -0.063 4.063 14 H 0.139 0.861 15 C 0.002 3.998 16 O -0.291 6.291 17 C -0.015 4.015 18 C -0.233 4.233 19 C 0.200 3.800 20 O -0.355 6.355 21 H 0.077 0.923 22 H 0.050 0.950 23 H 0.037 0.963 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.147 0.853 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.128 0.872 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 24.577 -9.150 0.586 26.231 hybrid contribution -0.662 0.941 -0.517 1.261 sum 23.914 -8.209 0.069 25.284 Atomic orbital electron populations 1.70070 1.08414 1.28359 1.52333 1.26076 0.95703 1.03746 0.93814 0.85590 0.79651 0.77754 0.79250 1.19317 1.20550 1.16472 1.21447 0.91974 0.93254 1.51011 0.95288 1.19431 0.94139 0.93805 0.97004 1.21257 0.92607 0.98018 1.01298 1.22651 0.94935 0.82331 1.00514 1.87901 1.19450 1.27986 1.94800 1.23824 0.83096 1.03790 0.95548 0.86110 1.22579 0.81769 0.92722 1.02721 1.87975 1.21960 1.91840 1.27348 1.22930 1.03734 0.94204 0.80676 1.23140 0.92994 1.02386 1.04767 1.26346 0.91600 0.70971 0.91056 1.90446 1.61134 1.37074 1.46873 0.92328 0.95016 0.96350 0.93954 0.92207 0.90938 0.93948 0.85297 0.91739 0.91971 0.84071 0.87240 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.22 13.96 21.45 0.30 -60.92 16 2 C 0.00 0.20 5.47 84.66 0.46 0.66 16 3 Si 0.96 44.87 27.47 68.60 1.88 46.75 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 7 C -0.54 -32.54 9.66 25.60 0.25 -32.29 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 9 C -0.01 -0.31 4.04 29.85 0.12 -0.19 16 10 C -0.09 -4.04 5.52 30.59 0.17 -3.87 16 11 C 0.07 2.46 5.64 71.98 0.41 2.87 16 12 O -0.38 -12.28 9.69 -131.15 -1.27 -13.55 16 13 C 0.00 -0.08 3.09 30.23 0.09 0.02 16 14 H 0.12 2.24 7.81 -2.39 -0.02 2.22 16 15 C 0.08 1.37 6.52 72.10 0.47 1.84 16 16 O -0.37 -5.55 10.68 -148.98 -1.59 -7.14 16 17 C 0.06 0.63 6.85 72.10 0.49 1.13 16 18 C -0.20 -2.57 6.40 30.23 0.19 -2.37 16 19 C 0.32 7.77 6.72 29.62 0.20 7.97 16 20 O -0.48 -16.45 17.00 16.39 0.28 -16.17 16 21 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 22 H 0.03 1.45 7.20 -2.39 -0.02 1.44 16 23 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 24 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.07 2.11 8.09 -2.39 -0.02 2.09 16 27 H 0.04 1.50 7.81 -2.39 -0.02 1.48 16 28 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 30 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 31 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -75.69 279.35 3.48 -72.21 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: 1.02 Total: 3.07 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 2.86 Total: -24.25 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.30 Total: -60.92 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -2.58 Total: -36.86 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -75.69 3.48 -72.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686528794.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.353 kcal (2) G-P(sol) polarization free energy of solvation -75.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds