Wall clock time and date at job start Mon Mar 30 2020 03:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99601 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99458 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99799 * 3 2 1 7 7 C 1.37876 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99844 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 O 1.42906 * 109.46748 * 179.97438 * 11 10 9 13 13 C 1.42898 * 113.99821 * 179.97438 * 12 11 10 14 14 H 1.09009 * 109.73332 * 330.00529 * 13 12 11 15 15 C 1.53354 * 109.73760 * 209.34909 * 13 12 11 16 16 O 1.42912 * 109.27093 * 188.14645 * 15 13 12 17 17 C 1.42893 * 114.54222 * 64.85230 * 16 15 13 18 18 C 1.53356 * 109.27906 * 295.09143 * 17 16 15 19 19 C 1.51507 * 109.73819 * 90.65668 * 13 12 11 20 20 O 1.20768 * 121.21509 * 348.04946 * 19 13 12 21 21 H 0.96991 * 119.99882 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 23 23 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 24 24 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 25 25 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 26 26 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 27 27 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 28 28 H 1.09003 * 109.50702 * 308.03241 * 15 13 12 29 29 H 1.08999 * 109.50821 * 68.15255 * 15 13 12 30 30 H 1.09005 * 109.50055 * 175.14906 * 17 16 15 31 31 H 1.09001 * 109.49799 * 55.03878 * 17 16 15 32 32 H 1.08994 * 109.73946 * 292.60619 * 18 17 16 33 33 H 1.09007 * 109.73898 * 171.90297 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 8 6.0280 -3.9837 0.0027 13 6 7.4525 -4.0965 0.0033 14 1 7.8898 -3.2398 -0.5097 15 6 7.8698 -5.3918 -0.7037 16 8 9.2746 -5.5909 -0.5331 17 6 9.6830 -5.8116 0.8184 18 6 9.4076 -4.5484 1.6433 19 6 7.9608 -4.1529 1.4295 20 8 7.2390 -3.8917 2.3619 21 1 -0.4849 0.8400 -0.0004 22 1 3.8745 -0.6800 0.8911 23 1 3.8753 -0.6803 -0.8888 24 1 3.6587 -3.1502 -0.8892 25 1 3.6580 -3.1505 0.8907 26 1 5.9157 -2.1223 -0.8873 27 1 5.9142 -2.1228 0.8927 28 1 7.3286 -6.2333 -0.2710 29 1 7.6384 -5.3173 -1.7663 30 1 10.7490 -6.0379 0.8441 31 1 9.1226 -6.6482 1.2357 32 1 10.0624 -3.7425 1.3120 33 1 9.5808 -4.7536 2.6997 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686528796.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:54 Heat of formation + Delta-G solvation = -162.575382 kcal Electronic energy + Delta-G solvation = -15718.634362 eV Core-core repulsion = 12936.463601 eV Total energy + Delta-G solvation = -2782.170761 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.46205 -38.93657 -38.68002 -35.92675 -33.88855 -32.65002 -31.44156 -28.85102 -25.05105 -24.94613 -24.33605 -22.06502 -20.66121 -19.02483 -18.19018 -17.74123 -17.53357 -16.87236 -16.38362 -16.27094 -16.09426 -15.24278 -15.19503 -14.85600 -14.56696 -14.22257 -13.68949 -13.44611 -13.25721 -12.88657 -12.71016 -12.23285 -12.13284 -11.88986 -11.81124 -11.66116 -11.37961 -11.32422 -10.87764 -10.79151 -10.11424 -8.31947 -6.37613 0.73067 1.34457 1.37626 1.49480 2.25421 2.34756 2.69616 3.02784 3.03863 3.61141 3.72895 3.91164 3.94506 4.08075 4.16325 4.22781 4.45973 4.49183 4.61126 4.68168 4.76498 4.79427 4.85159 4.91427 4.97389 5.37763 5.49386 5.59919 5.85403 6.09571 6.24947 6.37656 6.69897 7.26895 8.85192 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.054834 B = 0.004754 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.513925 B = 5887.836580 C = 6024.556157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.956 3.044 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.248 1.248 7 C -0.539 4.539 8 H 0.029 0.971 9 C -0.006 4.006 10 C -0.094 4.094 11 C 0.072 3.928 12 O -0.382 6.382 13 C -0.003 4.003 14 H 0.122 0.878 15 C 0.079 3.921 16 O -0.373 6.373 17 C 0.061 3.939 18 C -0.195 4.195 19 C 0.324 3.676 20 O -0.481 6.481 21 H 0.268 0.732 22 H 0.019 0.981 23 H 0.030 0.970 24 H 0.059 0.941 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.129 0.871 30 H 0.142 0.858 31 H 0.062 0.938 32 H 0.131 0.869 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.085 -9.204 -0.946 26.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.577 4.577 8 H 0.047 0.953 9 C -0.044 4.044 10 C -0.132 4.132 11 C -0.004 4.004 12 O -0.301 6.301 13 C -0.063 4.063 14 H 0.139 0.861 15 C 0.002 3.998 16 O -0.292 6.292 17 C -0.015 4.015 18 C -0.233 4.233 19 C 0.200 3.800 20 O -0.356 6.356 21 H 0.077 0.923 22 H 0.037 0.963 23 H 0.049 0.951 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.147 0.853 30 H 0.159 0.841 31 H 0.080 0.920 32 H 0.149 0.851 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 24.558 -9.131 -0.602 26.207 hybrid contribution -0.659 0.934 0.485 1.241 sum 23.899 -8.198 -0.116 25.266 Atomic orbital electron populations 1.70071 1.08411 1.28359 1.52341 1.26075 0.95703 1.03752 0.93810 0.85582 0.79348 0.77709 0.79557 1.18417 1.20815 1.17137 1.21448 0.91972 0.93258 1.51015 0.95292 1.19430 0.94144 0.93802 0.97000 1.21259 0.92614 0.98012 1.01297 1.22659 0.94934 0.82324 1.00521 1.87904 1.19451 1.27990 1.94797 1.23825 0.83105 1.03814 0.95520 0.86084 1.22587 0.81770 0.92846 1.02586 1.87973 1.22028 1.91638 1.27518 1.22930 1.03744 0.94219 0.80634 1.23138 0.92995 1.02434 1.04714 1.26346 0.91587 0.70961 0.91071 1.90449 1.61077 1.37290 1.46738 0.92327 0.96255 0.95121 0.92186 0.93976 0.90841 0.94021 0.91761 0.85276 0.84065 0.91977 0.85121 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16 2 C 0.00 0.20 5.47 84.65 0.46 0.66 16 3 Si 0.96 44.86 27.47 68.60 1.88 46.75 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 7 C -0.54 -32.54 9.66 25.60 0.25 -32.29 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 9 C -0.01 -0.31 4.04 29.85 0.12 -0.19 16 10 C -0.09 -4.04 5.52 30.60 0.17 -3.87 16 11 C 0.07 2.46 5.65 71.98 0.41 2.86 16 12 O -0.38 -12.29 9.68 -131.15 -1.27 -13.56 16 13 C 0.00 -0.08 3.09 30.22 0.09 0.01 16 14 H 0.12 2.24 7.80 -2.38 -0.02 2.22 16 15 C 0.08 1.37 6.52 72.10 0.47 1.84 16 16 O -0.37 -5.56 10.68 -148.98 -1.59 -7.15 16 17 C 0.06 0.63 6.85 72.10 0.49 1.13 16 18 C -0.20 -2.57 6.40 30.23 0.19 -2.38 16 19 C 0.32 7.79 6.73 29.62 0.20 7.99 16 20 O -0.48 -16.50 17.07 16.36 0.28 -16.22 16 21 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 22 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 23 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 24 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 2.12 8.09 -2.39 -0.02 2.10 16 27 H 0.04 1.47 7.87 -2.39 -0.02 1.46 16 28 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 29 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.14 0.60 8.14 -2.38 -0.02 0.59 16 31 H 0.06 0.64 8.13 -2.39 -0.02 0.63 16 32 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -75.77 279.49 3.48 -72.29 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: 1.02 Total: 3.04 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 2.86 Total: -24.24 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.30 Total: -60.90 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -2.58 Total: -36.93 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.75 kcal Total: -75.77 3.48 -72.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686528796.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.289 kcal (2) G-P(sol) polarization free energy of solvation -75.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds