Wall clock time and date at job start Mon Mar 30 2020 03:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.52998 * 109.47257 * 120.00273 * 2 1 3 5 5 C 1.50702 * 109.47501 * 184.99961 * 4 2 1 6 6 H 1.07997 * 119.99795 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99712 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00377 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99673 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46972 * 60.00125 * 9 7 5 11 11 H 1.48500 * 109.47248 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47222 * 300.00208 * 9 7 5 13 13 O 1.42906 * 109.47396 * 240.00073 * 2 1 3 14 14 C 1.42901 * 113.99410 * 90.00142 * 13 2 1 15 15 H 1.09000 * 109.77625 * 29.32494 * 14 13 2 16 16 C 1.53364 * 109.73290 * 150.00631 * 14 13 2 17 17 O 1.42895 * 109.27699 * 171.90752 * 16 14 13 18 18 C 1.42891 * 114.49588 * 295.06283 * 17 16 14 19 19 C 1.53363 * 109.27764 * 64.93273 * 18 17 16 20 20 C 1.51510 * 108.13407 * 307.72208 * 19 18 17 21 21 O 1.20765 * 121.21046 * 228.45070 * 20 19 18 22 22 H 1.09011 * 109.46639 * 59.99619 * 1 2 3 23 23 H 1.08999 * 109.47119 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47476 * 299.99807 * 1 2 3 25 25 H 1.09000 * 109.47200 * 305.00129 * 4 2 1 26 26 H 1.09005 * 109.47003 * 64.99436 * 4 2 1 27 27 H 0.97000 * 119.99849 * 179.97438 * 8 7 5 28 28 H 1.08992 * 109.50875 * 51.96247 * 16 14 13 29 29 H 1.09002 * 109.53415 * 291.86232 * 16 14 13 30 30 H 1.09004 * 109.50663 * 304.99353 * 18 17 16 31 31 H 1.08996 * 109.50657 * 184.87463 * 18 17 16 32 32 H 1.09002 * 109.73707 * 67.39454 * 19 18 17 33 33 H 1.09005 * 109.73699 * 188.04740 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1937 2.3578 8 7 3.5763 -1.8380 3.2994 9 14 6.0921 -1.0626 2.4361 10 1 6.4855 0.3682 2.4960 11 1 6.5871 -1.7626 3.6487 12 1 6.6838 -1.6884 1.2265 13 8 2.0064 -0.6736 -1.1668 14 6 2.2002 0.1831 -2.2940 15 1 2.4514 1.1880 -1.9546 16 6 3.3315 -0.3649 -3.1725 17 8 3.3924 0.3865 -4.3864 18 6 2.2407 0.2563 -5.2222 19 6 1.0239 0.8528 -4.5040 20 6 0.9346 0.2259 -3.1276 21 8 -0.1061 -0.2236 -2.7111 22 1 -0.3633 0.5140 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6054 -0.2618 2.1369 26 1 1.7515 -1.7716 1.2055 27 1 4.0608 -2.2455 4.0344 28 1 3.1388 -1.4128 -3.4024 29 1 4.2798 -0.2771 -2.6423 30 1 2.0594 -0.7982 -5.4305 31 1 2.4081 0.7891 -6.1582 32 1 1.1447 1.9320 -4.4098 33 1 0.1182 0.6317 -5.0688 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686531149.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:00 Heat of formation + Delta-G solvation = -156.111714 kcal Electronic energy + Delta-G solvation = -16468.049725 eV Core-core repulsion = 13686.159250 eV Total energy + Delta-G solvation = -2781.890475 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.44029 -38.93734 -38.70092 -35.33513 -33.41747 -32.59067 -30.73157 -29.31250 -25.39131 -24.89196 -24.57249 -22.01878 -20.68164 -18.49985 -18.30219 -17.62569 -17.14084 -16.78456 -16.64492 -16.22714 -15.40198 -15.11367 -14.79156 -14.71839 -14.06359 -13.76477 -13.65225 -13.36537 -13.22523 -12.83168 -12.80414 -12.58677 -12.29391 -12.19036 -11.80943 -11.53689 -11.29489 -10.88529 -10.82483 -10.56143 -9.97083 -8.17411 -6.27376 0.79575 1.41406 1.45091 1.52577 2.41073 2.43108 2.77120 3.12268 3.19345 3.69963 3.78241 3.97426 4.00958 4.16770 4.23122 4.36515 4.50293 4.53849 4.65185 4.76899 4.80520 4.88208 4.95258 5.11591 5.23899 5.37086 5.46373 5.79308 5.99925 6.20893 6.28507 6.54995 6.84963 7.40126 8.94808 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.007692 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.816313 B = 3639.209791 C = 4387.678284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.101 3.899 3 H 0.058 0.942 4 C 0.027 3.973 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.965 3.035 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.267 1.267 13 O -0.369 6.369 14 C -0.003 4.003 15 H 0.107 0.893 16 C 0.080 3.920 17 O -0.375 6.375 18 C 0.059 3.941 19 C -0.192 4.192 20 C 0.326 3.674 21 O -0.465 6.465 22 H 0.068 0.932 23 H 0.040 0.960 24 H 0.064 0.936 25 H 0.013 0.987 26 H -0.011 1.011 27 H 0.263 0.737 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.061 0.939 31 H 0.143 0.857 32 H 0.129 0.871 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.775 7.155 -17.407 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.044 3.956 3 H 0.076 0.924 4 C -0.010 4.010 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.789 3.211 10 H -0.188 1.188 11 H -0.211 1.211 12 H -0.192 1.192 13 O -0.288 6.288 14 C -0.063 4.063 15 H 0.125 0.875 16 C 0.002 3.998 17 O -0.294 6.294 18 C -0.017 4.017 19 C -0.229 4.229 20 C 0.202 3.798 21 O -0.339 6.339 22 H 0.086 0.914 23 H 0.060 0.940 24 H 0.083 0.917 25 H 0.031 0.969 26 H 0.008 0.992 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.131 0.869 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.146 0.854 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.118 6.732 -17.084 18.484 hybrid contribution 0.316 -0.230 0.813 0.902 sum -1.801 6.502 -16.271 17.614 Atomic orbital electron populations 1.22366 0.95859 1.01676 1.01903 1.22293 0.92818 0.95196 0.85284 0.92353 1.19115 0.95951 0.94607 0.91294 1.21476 0.92814 1.34265 1.07952 0.91934 1.25978 1.03897 0.94844 0.95257 1.70098 1.37789 1.36992 1.12892 0.85498 0.79121 0.78807 0.77626 1.18845 1.21056 1.19157 1.87993 1.86204 1.34941 1.19644 1.23805 0.96006 0.97424 0.89052 0.87539 1.22488 0.97901 0.95143 0.84235 1.87960 1.40720 1.70094 1.30592 1.22961 0.82873 1.01632 0.94279 1.23109 1.02784 1.04061 0.92982 1.26193 0.88857 0.74190 0.90528 1.90369 1.33160 1.37087 1.73281 0.91358 0.94050 0.91727 0.96895 0.99215 0.92839 0.91887 0.86904 0.92023 0.83938 0.85354 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.42 8.61 71.98 0.62 -5.80 16 2 C 0.10 4.49 2.67 30.59 0.08 4.58 16 3 H 0.06 2.42 7.37 -2.39 -0.02 2.40 16 4 C 0.03 1.51 4.68 29.85 0.14 1.65 16 5 C -0.53 -30.38 8.88 25.60 0.23 -30.15 16 6 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.94 -58.14 13.29 21.45 0.28 -57.86 16 9 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 13 O -0.37 -15.87 9.20 -131.20 -1.21 -17.08 16 14 C 0.00 -0.10 3.09 30.26 0.09 -0.01 16 15 H 0.11 3.12 7.37 -2.39 -0.02 3.10 16 16 C 0.08 2.16 6.51 72.10 0.47 2.63 16 17 O -0.38 -8.26 10.68 -148.98 -1.59 -9.85 16 18 C 0.06 0.89 6.85 72.10 0.49 1.38 16 19 C -0.19 -3.21 6.39 30.23 0.19 -3.02 16 20 C 0.33 9.23 6.54 29.65 0.19 9.43 16 21 O -0.46 -16.53 14.08 16.32 0.23 -16.30 16 22 H 0.07 2.53 5.45 -2.38 -0.01 2.52 16 23 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 26 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 27 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 28 H 0.06 1.72 8.13 -2.39 -0.02 1.70 16 29 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.06 0.92 8.13 -2.38 -0.02 0.90 16 31 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -71.29 275.43 3.80 -67.49 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 1.09 Total: 6.02 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: 2.97 Total: -19.01 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.28 Total: -57.86 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -2.57 Total: -43.23 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -71.29 3.80 -67.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686531149.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.621 kcal (2) G-P(sol) polarization free energy of solvation -71.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds