Wall clock time and date at job start Mon Mar 30 2020 03:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47506 * 2 1 4 4 C 1.50703 * 109.46964 * 239.99572 * 2 1 3 5 5 H 1.08002 * 120.00006 * 271.57323 * 4 2 1 6 6 C 1.37873 * 119.99697 * 91.58005 * 4 2 1 7 7 N 1.31516 * 119.99729 * 185.45860 * 6 4 2 8 8 Si 1.86801 * 120.00289 * 5.45675 * 6 4 2 9 9 H 1.48492 * 109.47192 * 84.78605 * 8 6 4 10 10 H 1.48498 * 109.47034 * 204.78845 * 8 6 4 11 11 H 1.48501 * 109.46729 * 324.78612 * 8 6 4 12 12 C 1.53004 * 109.46504 * 120.00048 * 2 1 3 13 13 C 1.50705 * 110.43427 * 179.29953 * 12 2 1 14 14 O 1.20828 * 119.99488 * 5.21824 * 13 12 2 15 15 O 1.34221 * 120.00137 * 185.49447 * 13 12 2 16 16 C 1.54808 * 110.49154 * 56.75502 * 12 2 1 17 17 C 1.54994 * 102.08984 * 262.06910 * 16 12 2 18 18 O 1.44378 * 103.49380 * 322.97681 * 17 16 12 19 19 C 1.43751 * 106.97522 * 40.06015 * 18 17 16 20 20 H 1.08994 * 109.87848 * 92.91164 * 19 18 17 21 21 C 1.53000 * 109.87866 * 214.06803 * 19 18 17 22 22 H 1.08991 * 109.47607 * 174.18750 * 1 2 3 23 23 H 1.09001 * 109.47494 * 294.19634 * 1 2 3 24 24 H 1.09008 * 109.46912 * 54.19258 * 1 2 3 25 25 H 0.97000 * 119.99870 * 179.97438 * 7 6 4 26 26 H 0.96703 * 117.00168 * 179.72497 * 15 13 12 27 27 H 1.09000 * 110.90647 * 20.26497 * 16 12 2 28 28 H 1.08995 * 110.91053 * 143.87240 * 16 12 2 29 29 H 1.09000 * 110.62139 * 81.47539 * 17 16 12 30 30 H 1.09000 * 110.62188 * 204.31479 * 17 16 12 31 31 H 1.08995 * 109.47004 * 171.37380 * 21 19 18 32 32 H 1.09005 * 109.46520 * 291.37125 * 21 19 18 33 33 H 1.08998 * 109.47555 * 51.36935 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1881 -1.7791 -1.2112 6 6 2.2931 0.0036 -2.3806 7 7 2.6279 -0.6275 -3.4848 8 14 2.1708 1.8676 -2.3707 9 1 3.4504 2.4450 -1.8867 10 1 1.8980 2.3531 -3.7473 11 1 1.0668 2.2864 -1.4702 12 6 2.0399 -0.7213 1.2493 13 6 3.5466 -0.7490 1.2628 14 8 4.1692 -0.1604 0.4109 15 8 4.1968 -1.4321 2.2179 16 6 1.4709 -2.1596 1.3148 17 6 0.2711 -1.9903 2.2813 18 8 0.7505 -1.0321 3.2490 19 6 1.5015 -0.0436 2.5243 20 1 0.8535 0.7905 2.2553 21 6 2.6675 0.4549 3.3804 22 1 -0.3634 -1.0223 -0.1041 23 1 -0.3634 0.4212 0.9374 24 1 -0.3633 0.6013 -0.8335 25 1 2.8110 -0.1251 -4.2941 26 1 5.1631 -1.4241 2.1828 27 1 1.1350 -2.4901 0.3320 28 1 2.2068 -2.8507 1.7257 29 1 -0.5968 -1.5985 1.7509 30 1 0.0295 -2.9378 2.7629 31 1 3.3188 1.0856 2.7755 32 1 2.2807 1.0320 4.2204 33 1 3.2335 -0.3978 3.7555 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691808495.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:03 Heat of formation + Delta-G solvation = -137.061656 kcal Electronic energy + Delta-G solvation = -17544.774081 eV Core-core repulsion = 14763.709678 eV Total energy + Delta-G solvation = -2781.064403 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.64653 -38.42788 -35.61946 -34.42942 -32.05932 -31.31817 -29.61209 -26.37964 -25.11693 -22.76110 -21.97494 -21.06889 -18.40276 -17.34147 -16.87152 -16.10137 -15.77047 -15.34872 -14.91861 -14.33639 -14.03203 -13.08529 -12.64630 -12.46883 -12.27740 -12.21097 -11.92336 -11.79383 -11.28322 -11.13360 -10.93690 -10.79295 -10.61036 -10.51004 -10.35347 -9.66991 -9.58441 -9.50861 -9.21002 -8.95759 -8.44806 -6.02464 -4.00310 3.00995 3.35629 3.41221 3.45075 3.66154 4.20528 4.49517 4.99376 5.13803 5.28410 5.40497 5.45978 5.60777 5.67784 5.81759 5.96929 6.04159 6.13473 6.18923 6.34154 6.39455 6.51473 6.56101 6.64891 6.71817 7.04497 7.16770 7.19938 7.35054 7.74064 8.48300 8.69777 8.96318 9.62043 11.10945 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.029663 B = 0.012199 C = 0.011107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.707011 B = 2294.665035 C = 2520.418721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.030 3.970 3 H 0.040 0.960 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.081 3.919 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.292 1.292 11 H -0.266 1.266 12 C -0.060 4.060 13 C 0.491 3.509 14 O -0.477 6.477 15 O -0.527 6.527 16 C -0.137 4.137 17 C 0.045 3.955 18 O -0.375 6.375 19 C 0.082 3.918 20 H 0.079 0.921 21 C -0.165 4.165 22 H 0.053 0.947 23 H 0.028 0.972 24 H 0.049 0.951 25 H 0.262 0.738 26 H 0.395 0.605 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 -0.392 11.918 12.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.011 3.989 3 H 0.058 0.942 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.120 4.120 7 N -0.539 5.539 8 Si 0.702 3.298 9 H -0.200 1.200 10 H -0.219 1.219 11 H -0.191 1.191 12 C -0.061 4.061 13 C 0.331 3.669 14 O -0.360 6.360 15 O -0.340 6.340 16 C -0.175 4.175 17 C -0.031 4.031 18 O -0.295 6.295 19 C 0.024 3.976 20 H 0.097 0.903 21 C -0.222 4.222 22 H 0.072 0.928 23 H 0.046 0.954 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.252 0.748 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.199 -0.189 11.696 11.902 hybrid contribution 0.778 1.007 -0.504 1.369 sum -1.422 0.819 11.192 11.311 Atomic orbital electron populations 1.22238 0.98117 1.01029 0.98861 1.19076 0.92340 0.96050 0.91411 0.94237 1.20695 1.44034 0.95509 0.93534 0.90935 1.24888 0.93947 0.97906 0.95291 1.69889 1.47506 1.35746 1.00755 0.86924 0.79122 0.87058 0.76699 1.19974 1.21884 1.19135 1.22083 0.87282 0.98416 0.98363 1.22949 0.91186 0.75315 0.77404 1.90748 1.68576 1.41122 1.35548 1.84628 1.25901 1.70612 1.52814 1.23206 0.97563 0.94861 1.01820 1.23700 0.96750 0.92619 0.90057 1.88792 1.70379 1.38644 1.31673 1.22865 0.92973 0.91669 0.90045 0.90282 1.22226 0.97617 1.02235 1.00089 0.92778 0.95357 0.93174 0.92795 0.74766 0.87951 0.90573 0.91400 0.89465 0.91922 0.92187 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 7.47 37.16 0.28 -2.61 16 2 C 0.03 0.69 0.85 -91.77 -0.08 0.61 16 3 H 0.04 0.96 5.43 -51.93 -0.28 0.67 16 4 C -0.50 -13.58 6.69 -34.44 -0.23 -13.81 16 5 H 0.07 2.12 6.91 -52.49 -0.36 1.76 16 6 C 0.08 2.35 5.47 -17.82 -0.10 2.26 16 7 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 8 Si 0.87 22.25 26.65 -169.99 -4.53 17.72 16 9 H -0.27 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.27 -6.34 6.52 56.52 0.37 -5.97 16 12 C -0.06 -1.17 0.55 -154.13 -0.09 -1.26 16 13 C 0.49 9.94 4.90 36.01 0.18 10.11 16 14 O -0.48 -11.60 15.81 -18.75 -0.30 -11.89 16 15 O -0.53 -8.35 10.55 -39.23 -0.41 -8.76 16 16 C -0.14 -2.41 5.37 -24.73 -0.13 -2.54 16 17 C 0.05 0.68 7.22 38.21 0.28 0.96 16 18 O -0.38 -6.31 11.19 -35.23 -0.39 -6.70 16 19 C 0.08 1.42 3.21 -26.16 -0.08 1.33 16 20 H 0.08 1.35 6.21 -51.93 -0.32 1.03 16 21 C -0.16 -2.52 8.32 37.16 0.31 -2.21 16 22 H 0.05 1.02 6.09 -51.93 -0.32 0.70 16 23 H 0.03 0.49 5.90 -51.93 -0.31 0.18 16 24 H 0.05 1.04 7.47 -51.92 -0.39 0.65 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.40 4.55 9.10 45.56 0.41 4.96 16 27 H 0.10 1.94 5.92 -51.93 -0.31 1.63 16 28 H 0.08 1.28 7.42 -51.93 -0.39 0.90 16 29 H 0.07 0.99 5.92 -51.93 -0.31 0.69 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.99 7.26 -51.93 -0.38 0.61 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.26 6.21 -51.93 -0.32 0.94 16 LS Contribution 253.35 15.07 3.82 3.82 Total: -1.00 -32.50 253.35 -3.99 -36.49 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -3.28 Total: 3.41 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 0.33 Total: -7.16 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.77 Total: -26.92 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -1.10 Total: -27.36 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.53 Total: 17.72 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.50 -3.99 -36.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691808495.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.575 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds