Wall clock time and date at job start Mon Mar 30 2020 03:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47506 * 2 1 4 4 C 1.50703 * 109.46964 * 239.99572 * 2 1 3 5 5 H 1.08002 * 120.00006 * 271.57323 * 4 2 1 6 6 C 1.37873 * 119.99697 * 91.58005 * 4 2 1 7 7 N 1.31516 * 119.99729 * 185.45860 * 6 4 2 8 8 Si 1.86801 * 120.00289 * 5.45675 * 6 4 2 9 9 H 1.48492 * 109.47192 * 84.78605 * 8 6 4 10 10 H 1.48498 * 109.47034 * 204.78845 * 8 6 4 11 11 H 1.48501 * 109.46729 * 324.78612 * 8 6 4 12 12 C 1.53004 * 109.46504 * 120.00048 * 2 1 3 13 13 C 1.50705 * 110.43427 * 179.29953 * 12 2 1 14 14 O 1.20828 * 119.99488 * 5.21824 * 13 12 2 15 15 O 1.34221 * 120.00137 * 185.49447 * 13 12 2 16 16 C 1.54808 * 110.49154 * 56.75502 * 12 2 1 17 17 C 1.54994 * 102.08984 * 262.06910 * 16 12 2 18 18 O 1.44378 * 103.49380 * 322.97681 * 17 16 12 19 19 C 1.43751 * 106.97522 * 40.06015 * 18 17 16 20 20 H 1.08994 * 109.87848 * 92.91164 * 19 18 17 21 21 C 1.53000 * 109.87866 * 214.06803 * 19 18 17 22 22 H 1.08991 * 109.47607 * 174.18750 * 1 2 3 23 23 H 1.09001 * 109.47494 * 294.19634 * 1 2 3 24 24 H 1.09008 * 109.46912 * 54.19258 * 1 2 3 25 25 H 0.97000 * 119.99870 * 179.97438 * 7 6 4 26 26 H 0.96703 * 117.00168 * 179.72497 * 15 13 12 27 27 H 1.09000 * 110.90647 * 20.26497 * 16 12 2 28 28 H 1.08995 * 110.91053 * 143.87240 * 16 12 2 29 29 H 1.09000 * 110.62139 * 81.47539 * 17 16 12 30 30 H 1.09000 * 110.62188 * 204.31479 * 17 16 12 31 31 H 1.08995 * 109.47004 * 171.37380 * 21 19 18 32 32 H 1.09005 * 109.46520 * 291.37125 * 21 19 18 33 33 H 1.08998 * 109.47555 * 51.36935 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1881 -1.7791 -1.2112 6 6 2.2931 0.0036 -2.3806 7 7 2.6279 -0.6275 -3.4848 8 14 2.1708 1.8676 -2.3707 9 1 3.4504 2.4450 -1.8867 10 1 1.8980 2.3531 -3.7473 11 1 1.0668 2.2864 -1.4702 12 6 2.0399 -0.7213 1.2493 13 6 3.5466 -0.7490 1.2628 14 8 4.1692 -0.1604 0.4109 15 8 4.1968 -1.4321 2.2179 16 6 1.4709 -2.1596 1.3148 17 6 0.2711 -1.9903 2.2813 18 8 0.7505 -1.0321 3.2490 19 6 1.5015 -0.0436 2.5243 20 1 0.8535 0.7905 2.2553 21 6 2.6675 0.4549 3.3804 22 1 -0.3634 -1.0223 -0.1041 23 1 -0.3634 0.4212 0.9374 24 1 -0.3633 0.6013 -0.8335 25 1 2.8110 -0.1251 -4.2941 26 1 5.1631 -1.4241 2.1828 27 1 1.1350 -2.4901 0.3320 28 1 2.2068 -2.8507 1.7257 29 1 -0.5968 -1.5985 1.7509 30 1 0.0295 -2.9378 2.7629 31 1 3.3188 1.0856 2.7755 32 1 2.2807 1.0320 4.2204 33 1 3.2335 -0.3978 3.7555 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691808495.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:03 Heat of formation + Delta-G solvation = -161.275899 kcal Electronic energy + Delta-G solvation = -17545.824089 eV Core-core repulsion = 14763.709678 eV Total energy + Delta-G solvation = -2782.114411 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.14019 -39.89145 -37.16619 -36.11385 -34.01374 -32.64957 -31.20511 -27.86225 -26.97134 -24.20453 -23.38732 -22.68704 -20.01245 -19.04694 -18.68672 -17.58560 -17.27196 -16.72391 -16.47210 -16.09059 -15.58495 -14.76433 -14.45658 -14.03743 -13.82888 -13.55742 -13.39142 -13.23533 -12.89682 -12.76784 -12.60382 -12.44644 -12.30049 -12.02507 -11.86578 -11.60642 -11.21900 -11.17198 -10.90905 -10.61026 -10.48315 -8.23352 -6.21534 1.30815 1.37357 1.40905 1.42988 2.23908 2.38578 2.92890 3.16093 3.58082 3.80388 3.87383 4.18795 4.29630 4.36355 4.54398 4.61811 4.67446 4.69066 4.87803 4.93291 4.98336 5.09733 5.11258 5.14815 5.29535 5.33573 5.65626 5.71729 5.77131 5.94349 6.29385 6.78425 7.22985 7.42562 8.93666 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.029663 B = 0.012199 C = 0.011107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.707011 B = 2294.665035 C = 2520.418721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.027 3.973 3 H 0.026 0.974 4 C -0.481 4.481 5 H 0.039 0.961 6 C 0.019 3.981 7 N -0.952 5.952 8 Si 0.924 3.076 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.237 1.237 12 C -0.070 4.070 13 C 0.496 3.504 14 O -0.529 6.529 15 O -0.510 6.510 16 C -0.136 4.136 17 C 0.050 3.950 18 O -0.376 6.376 19 C 0.087 3.913 20 H 0.085 0.915 21 C -0.162 4.162 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.039 0.961 25 H 0.260 0.740 26 H 0.417 0.583 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.194 0.065 14.464 14.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.008 3.992 3 H 0.044 0.956 4 C -0.519 4.519 5 H 0.058 0.942 6 C -0.177 4.177 7 N -0.594 5.594 8 Si 0.750 3.250 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.160 1.160 12 C -0.072 4.072 13 C 0.339 3.661 14 O -0.416 6.416 15 O -0.324 6.324 16 C -0.173 4.173 17 C -0.026 4.026 18 O -0.295 6.295 19 C 0.029 3.971 20 H 0.103 0.897 21 C -0.219 4.219 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.277 0.723 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.136 0.864 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.446 0.255 14.297 14.709 hybrid contribution 1.220 0.729 -1.201 1.861 sum -2.226 0.984 13.096 13.320 Atomic orbital electron populations 1.22124 0.95594 1.01769 1.00219 1.19044 0.94250 0.94995 0.90938 0.95579 1.20953 1.41791 0.94204 0.94990 0.94241 1.25654 0.94680 1.02099 0.95265 1.70029 1.50516 1.37290 1.01547 0.86097 0.79412 0.82256 0.77197 1.21172 1.21732 1.16008 1.22057 0.87132 0.99672 0.98308 1.23128 0.91669 0.74379 0.76942 1.90738 1.69653 1.43534 1.37722 1.84557 1.27801 1.69134 1.50878 1.23180 0.98885 0.93621 1.01660 1.23816 0.95488 0.93800 0.89481 1.88801 1.70251 1.38694 1.31754 1.22828 0.93666 0.91620 0.89019 0.89740 1.22203 0.96888 1.02439 1.00360 0.91985 0.92085 0.94158 0.93095 0.72307 0.89948 0.90021 0.90573 0.86393 0.92811 0.89864 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 7.47 71.98 0.54 -4.69 16 2 C 0.03 1.19 0.85 -11.54 -0.01 1.18 16 3 H 0.03 1.23 5.43 -2.39 -0.01 1.22 16 4 C -0.48 -26.55 6.69 25.60 0.17 -26.38 16 5 H 0.04 2.39 6.91 -2.91 -0.02 2.37 16 6 C 0.02 1.13 5.47 84.65 0.46 1.60 16 7 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 8 Si 0.92 46.22 26.65 68.60 1.83 48.05 16 9 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 10 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 11 H -0.24 -10.57 6.52 99.48 0.65 -9.92 16 12 C -0.07 -2.63 0.55 -51.94 -0.03 -2.65 16 13 C 0.50 19.61 4.90 71.24 0.35 19.96 16 14 O -0.53 -25.94 15.81 21.96 0.35 -25.59 16 15 O -0.51 -15.12 10.55 -51.33 -0.54 -15.66 16 16 C -0.14 -4.51 5.37 31.89 0.17 -4.34 16 17 C 0.05 1.33 7.22 72.66 0.52 1.85 16 18 O -0.38 -11.04 11.19 -148.98 -1.67 -12.71 16 19 C 0.09 2.69 3.21 30.97 0.10 2.79 16 20 H 0.08 2.56 6.21 -2.39 -0.01 2.54 16 21 C -0.16 -4.44 8.32 71.98 0.60 -3.84 16 22 H 0.06 2.20 6.09 -2.39 -0.01 2.18 16 23 H 0.06 1.89 5.90 -2.39 -0.01 1.87 16 24 H 0.04 1.57 7.47 -2.38 -0.02 1.55 16 25 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 26 H 0.42 8.74 9.10 -74.06 -0.67 8.07 16 27 H 0.08 3.07 5.92 -2.39 -0.01 3.06 16 28 H 0.08 2.59 7.42 -2.39 -0.02 2.57 16 29 H 0.08 1.92 5.92 -2.39 -0.01 1.90 16 30 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.05 1.57 7.26 -2.39 -0.02 1.56 16 32 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.09 2.30 6.21 -2.39 -0.01 2.28 16 Total: -1.00 -71.34 253.35 3.55 -67.79 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.41 Total: 12.96 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 2.88 Total: -14.53 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.30 Total: -60.31 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -1.86 Total: -53.96 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.83 Total: 48.05 kcal Total: -71.34 3.55 -67.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691808495.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.481 kcal (2) G-P(sol) polarization free energy of solvation -71.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds