Wall clock time and date at job start Mon Mar 30 2020 03:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.46777 * 2 1 4 4 C 1.50689 * 109.47302 * 239.99786 * 2 1 3 5 5 H 1.08000 * 120.00405 * 240.00122 * 4 2 1 6 6 C 1.37880 * 120.00030 * 59.99710 * 4 2 1 7 7 N 1.31515 * 120.00080 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00020 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47010 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.46968 * 119.99938 * 8 6 4 11 11 H 1.48497 * 109.46850 * 240.00099 * 8 6 4 12 12 C 1.53005 * 109.46930 * 119.99284 * 2 1 3 13 13 C 1.50696 * 110.53651 * 68.32961 * 12 2 1 14 14 O 1.20823 * 120.00189 * 358.07836 * 13 12 2 15 15 O 1.34233 * 119.99825 * 178.08014 * 13 12 2 16 16 C 1.54804 * 110.49150 * 305.71273 * 12 2 1 17 17 C 1.54996 * 102.12388 * 220.42753 * 16 12 2 18 18 O 1.44478 * 103.44720 * 37.01859 * 17 16 12 19 19 C 1.43747 * 106.98175 * 319.94921 * 18 17 16 20 20 H 1.09001 * 109.87966 * 267.08557 * 19 18 17 21 21 C 1.52999 * 110.00095 * 146.01144 * 19 18 17 22 22 H 1.09001 * 109.46337 * 175.77236 * 1 2 3 23 23 H 1.08997 * 109.47050 * 295.76931 * 1 2 3 24 24 H 1.08992 * 109.47313 * 55.76840 * 1 2 3 25 25 H 0.96997 * 120.00258 * 179.97438 * 7 6 4 26 26 H 0.96705 * 117.00142 * 179.97438 * 15 13 12 27 27 H 1.09003 * 110.90807 * 338.63630 * 16 12 2 28 28 H 1.08997 * 110.91487 * 102.21013 * 16 12 2 29 29 H 1.09001 * 110.62166 * 155.54116 * 17 16 12 30 30 H 1.08999 * 110.61853 * 278.54112 * 17 16 12 31 31 H 1.08994 * 109.46908 * 296.08093 * 21 19 18 32 32 H 1.09000 * 109.47486 * 56.08856 * 21 19 18 33 33 H 1.09006 * 109.47203 * 176.08412 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 3.1476 -2.2864 -3.6036 10 1 1.1680 -1.5868 -4.8163 11 1 3.1473 -0.1858 -4.8159 12 6 2.0400 -0.7211 1.2494 13 6 1.7249 -2.1929 1.1759 14 8 1.1137 -2.6335 0.2314 15 8 2.1233 -3.0145 2.1599 16 6 1.4226 -0.0978 2.5248 17 6 2.6275 -0.0910 3.4998 18 8 3.7497 0.2208 2.6450 19 6 3.5560 -0.5018 1.4176 20 1 4.0662 -1.4637 1.4693 21 6 4.0979 0.3115 0.2404 22 1 -0.3632 -1.0249 -0.0758 23 1 -0.3633 0.4468 0.9254 24 1 -0.3633 0.5781 -0.8496 25 1 0.7095 1.1617 -3.4844 26 1 1.8976 -3.9504 2.0688 27 1 1.0727 0.9163 2.3319 28 1 0.6144 -0.7196 2.9097 29 1 2.4999 0.6773 4.2624 30 1 2.7554 -1.0713 3.9589 31 1 3.5238 1.2326 0.1403 32 1 5.1457 0.5538 0.4178 33 1 4.0102 -0.2726 -0.6758 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691808499.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:07 Heat of formation + Delta-G solvation = -131.519118 kcal Electronic energy + Delta-G solvation = -17556.814442 eV Core-core repulsion = 14775.990381 eV Total energy + Delta-G solvation = -2780.824060 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.49089 -38.30643 -35.78162 -34.41309 -31.98560 -30.99380 -28.83159 -26.01192 -25.11122 -22.43704 -21.68204 -21.34855 -18.50173 -17.29850 -16.80274 -16.02914 -15.38577 -14.81231 -14.58199 -14.42995 -13.77524 -13.13482 -12.99676 -12.32828 -11.96866 -11.84757 -11.58359 -11.21928 -11.07530 -10.86608 -10.76191 -10.50323 -10.44330 -10.34597 -10.06974 -9.74593 -9.55268 -9.31191 -9.05552 -8.64200 -8.24775 -5.94017 -3.91700 2.98202 3.33652 3.41933 3.46035 3.66296 4.39547 4.48898 5.09512 5.27439 5.36747 5.44467 5.55922 5.67695 6.00142 6.07481 6.09999 6.28410 6.42405 6.50887 6.61638 6.84258 6.91824 7.06221 7.16519 7.25892 7.39824 7.47726 7.72831 7.97057 8.10849 8.41170 8.68214 8.98378 9.64794 11.13105 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.030844 B = 0.011344 C = 0.010746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.562840 B = 2467.608524 C = 2604.962675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 H 0.052 0.948 4 C -0.481 4.481 5 H 0.055 0.945 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.286 1.286 12 C -0.066 4.066 13 C 0.479 3.521 14 O -0.468 6.468 15 O -0.533 6.533 16 C -0.139 4.139 17 C 0.046 3.954 18 O -0.378 6.378 19 C 0.098 3.902 20 H 0.059 0.941 21 C -0.154 4.154 22 H 0.040 0.960 23 H 0.005 0.995 24 H 0.082 0.918 25 H 0.258 0.742 26 H 0.396 0.604 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 -2.883 9.529 10.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.047 3.953 3 H 0.070 0.930 4 C -0.519 4.519 5 H 0.073 0.927 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.212 1.212 12 C -0.068 4.068 13 C 0.319 3.681 14 O -0.351 6.351 15 O -0.346 6.346 16 C -0.176 4.176 17 C -0.030 4.030 18 O -0.297 6.297 19 C 0.041 3.959 20 H 0.077 0.923 21 C -0.210 4.210 22 H 0.059 0.941 23 H 0.024 0.976 24 H 0.101 0.899 25 H 0.068 0.932 26 H 0.253 0.747 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.180 -2.339 9.175 9.716 hybrid contribution -0.187 -1.391 -0.971 1.707 sum 1.993 -3.731 8.203 9.229 Atomic orbital electron populations 1.21965 0.98203 1.00834 0.99229 1.18858 0.92995 0.95474 0.88015 0.93019 1.20945 1.29904 1.11058 0.89996 0.92721 1.24821 0.95470 0.95070 0.98661 1.69881 1.37241 1.23091 1.23040 0.86607 0.78590 0.79680 0.83572 1.19977 1.21230 1.21224 1.22197 0.96816 0.87387 1.00353 1.23400 0.76268 0.89438 0.79027 1.90742 1.35783 1.76809 1.31751 1.84593 1.76286 1.23652 1.50052 1.23216 0.98147 1.02402 0.93883 1.23533 0.85473 1.00462 0.93573 1.88856 1.44354 1.69808 1.26719 1.22605 0.92840 0.95199 0.85298 0.92308 1.22324 0.98428 1.02351 0.97905 0.94131 0.97633 0.89896 0.93222 0.74742 0.89235 0.90821 0.89547 0.92123 0.91028 0.94483 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.44 37.16 0.31 -3.16 16 2 C 0.06 1.53 1.08 -91.77 -0.10 1.43 16 3 H 0.05 1.31 6.00 -51.93 -0.31 1.00 16 4 C -0.48 -12.58 4.01 -34.44 -0.14 -12.71 16 5 H 0.05 1.47 6.27 -52.49 -0.33 1.14 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.06 11.37 55.43 0.63 -24.43 16 8 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 C -0.07 -1.33 0.38 -154.14 -0.06 -1.39 16 13 C 0.48 9.58 5.94 36.00 0.21 9.79 16 14 O -0.47 -10.99 13.30 -18.75 -0.25 -11.24 16 15 O -0.53 -8.34 13.06 -39.27 -0.51 -8.86 16 16 C -0.14 -2.34 5.05 -24.73 -0.12 -2.46 16 17 C 0.05 0.71 7.73 38.21 0.30 1.00 16 18 O -0.38 -6.97 11.19 -35.23 -0.39 -7.36 16 19 C 0.10 1.90 3.60 -26.16 -0.09 1.81 16 20 H 0.06 1.12 7.51 -51.93 -0.39 0.73 16 21 C -0.15 -3.09 8.23 37.16 0.31 -2.78 16 22 H 0.04 1.01 6.35 -51.93 -0.33 0.68 16 23 H 0.00 0.10 6.55 -51.93 -0.34 -0.24 16 24 H 0.08 2.20 6.19 -51.93 -0.32 1.88 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.40 4.39 9.10 45.56 0.41 4.81 16 27 H 0.09 1.52 7.22 -51.93 -0.37 1.14 16 28 H 0.07 1.15 7.86 -51.93 -0.41 0.74 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.53 6.05 -51.93 -0.31 1.21 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.11 2.34 5.30 -51.93 -0.28 2.06 16 LS Contribution 256.68 15.07 3.87 3.87 Total: -1.00 -30.08 256.68 -4.54 -34.63 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -3.38 Total: 3.77 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 0.52 Total: -6.93 kcal Atomic # 7 Polarization: -25.06 SS G_CDS: 0.63 Total: -24.43 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -1.16 Total: -27.45 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.08 -4.54 -34.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691808499.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.893 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds