Wall clock time and date at job start Mon Mar 30 2020 03:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.46777 * 2 1 4 4 C 1.50689 * 109.47302 * 239.99786 * 2 1 3 5 5 H 1.08000 * 120.00405 * 240.00122 * 4 2 1 6 6 C 1.37880 * 120.00030 * 59.99710 * 4 2 1 7 7 N 1.31515 * 120.00080 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00020 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47010 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.46968 * 119.99938 * 8 6 4 11 11 H 1.48497 * 109.46850 * 240.00099 * 8 6 4 12 12 C 1.53005 * 109.46930 * 119.99284 * 2 1 3 13 13 C 1.50696 * 110.53651 * 68.32961 * 12 2 1 14 14 O 1.20823 * 120.00189 * 358.07836 * 13 12 2 15 15 O 1.34233 * 119.99825 * 178.08014 * 13 12 2 16 16 C 1.54804 * 110.49150 * 305.71273 * 12 2 1 17 17 C 1.54996 * 102.12388 * 220.42753 * 16 12 2 18 18 O 1.44478 * 103.44720 * 37.01859 * 17 16 12 19 19 C 1.43747 * 106.98175 * 319.94921 * 18 17 16 20 20 H 1.09001 * 109.87966 * 267.08557 * 19 18 17 21 21 C 1.52999 * 110.00095 * 146.01144 * 19 18 17 22 22 H 1.09001 * 109.46337 * 175.77236 * 1 2 3 23 23 H 1.08997 * 109.47050 * 295.76931 * 1 2 3 24 24 H 1.08992 * 109.47313 * 55.76840 * 1 2 3 25 25 H 0.96997 * 120.00258 * 179.97438 * 7 6 4 26 26 H 0.96705 * 117.00142 * 179.97438 * 15 13 12 27 27 H 1.09003 * 110.90807 * 338.63630 * 16 12 2 28 28 H 1.08997 * 110.91487 * 102.21013 * 16 12 2 29 29 H 1.09001 * 110.62166 * 155.54116 * 17 16 12 30 30 H 1.08999 * 110.61853 * 278.54112 * 17 16 12 31 31 H 1.08994 * 109.46908 * 296.08093 * 21 19 18 32 32 H 1.09000 * 109.47486 * 56.08856 * 21 19 18 33 33 H 1.09006 * 109.47203 * 176.08412 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 3.1476 -2.2864 -3.6036 10 1 1.1680 -1.5868 -4.8163 11 1 3.1473 -0.1858 -4.8159 12 6 2.0400 -0.7211 1.2494 13 6 1.7249 -2.1929 1.1759 14 8 1.1137 -2.6335 0.2314 15 8 2.1233 -3.0145 2.1599 16 6 1.4226 -0.0978 2.5248 17 6 2.6275 -0.0910 3.4998 18 8 3.7497 0.2208 2.6450 19 6 3.5560 -0.5018 1.4176 20 1 4.0662 -1.4637 1.4693 21 6 4.0979 0.3115 0.2404 22 1 -0.3632 -1.0249 -0.0758 23 1 -0.3633 0.4468 0.9254 24 1 -0.3633 0.5781 -0.8496 25 1 0.7095 1.1617 -3.4844 26 1 1.8976 -3.9504 2.0688 27 1 1.0727 0.9163 2.3319 28 1 0.6144 -0.7196 2.9097 29 1 2.4999 0.6773 4.2624 30 1 2.7554 -1.0713 3.9589 31 1 3.5238 1.2326 0.1403 32 1 5.1457 0.5538 0.4178 33 1 4.0102 -0.2726 -0.6758 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691808499.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:06 Heat of formation + Delta-G solvation = -152.436724 kcal Electronic energy + Delta-G solvation = -17557.721497 eV Core-core repulsion = 14775.990381 eV Total energy + Delta-G solvation = -2781.731116 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.02690 -39.77661 -37.31553 -36.12069 -33.82678 -32.48260 -30.60024 -27.55069 -27.08243 -23.86610 -23.46836 -22.81170 -20.11097 -18.91431 -18.48609 -17.66323 -16.91195 -16.49641 -16.21535 -15.93920 -15.29498 -14.82167 -14.64711 -14.07324 -13.58476 -13.50383 -13.22900 -12.92121 -12.88794 -12.52973 -12.38146 -12.28785 -12.02571 -11.99468 -11.87652 -11.54726 -11.20869 -11.03453 -10.69061 -10.43528 -10.27222 -8.00774 -6.00963 1.38114 1.41357 1.43633 1.50676 2.24591 2.48013 3.03977 3.29250 3.65953 3.80830 3.98342 4.18831 4.36925 4.59718 4.70602 4.81596 4.84788 4.88926 5.01706 5.03603 5.07542 5.21611 5.32749 5.39057 5.64107 5.70587 5.78762 5.97990 6.03964 6.12407 6.40959 6.93761 7.25237 7.56336 9.05607 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.030844 B = 0.011344 C = 0.010746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.562840 B = 2467.608524 C = 2604.962675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.066 3.934 3 H 0.033 0.967 4 C -0.471 4.471 5 H 0.044 0.956 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.935 3.065 9 H -0.274 1.274 10 H -0.291 1.291 11 H -0.279 1.279 12 C -0.074 4.074 13 C 0.487 3.513 14 O -0.512 6.512 15 O -0.515 6.515 16 C -0.136 4.136 17 C 0.049 3.951 18 O -0.388 6.388 19 C 0.103 3.897 20 H 0.065 0.935 21 C -0.148 4.148 22 H 0.025 0.975 23 H 0.033 0.967 24 H 0.053 0.947 25 H 0.256 0.744 26 H 0.420 0.580 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.798 -3.542 11.410 12.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.048 3.952 3 H 0.051 0.949 4 C -0.509 4.509 5 H 0.063 0.937 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.763 3.237 9 H -0.198 1.198 10 H -0.218 1.218 11 H -0.205 1.205 12 C -0.076 4.076 13 C 0.329 3.671 14 O -0.398 6.398 15 O -0.329 6.329 16 C -0.174 4.174 17 C -0.027 4.027 18 O -0.307 6.307 19 C 0.046 3.954 20 H 0.083 0.917 21 C -0.204 4.204 22 H 0.044 0.956 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.280 0.720 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.136 0.864 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.836 -3.021 11.089 11.838 hybrid contribution -0.367 -1.227 -1.454 1.938 sum 2.468 -4.248 9.635 10.816 Atomic orbital electron populations 1.21796 0.98519 0.99471 0.99387 1.18688 0.92638 0.94718 0.89184 0.94895 1.21113 1.28643 1.10151 0.91019 0.93735 1.25431 0.96230 0.95910 1.01027 1.69989 1.38636 1.24306 1.23203 0.85853 0.77921 0.78877 0.81098 1.19837 1.21773 1.20528 1.22060 0.97687 0.87782 1.00056 1.23258 0.75279 0.89733 0.78845 1.90738 1.37937 1.77554 1.33602 1.84501 1.75252 1.25209 1.47931 1.23239 0.99324 1.02205 0.92590 1.23763 0.83277 1.02557 0.93130 1.88841 1.45623 1.69826 1.26451 1.22458 0.92158 0.95227 0.85581 0.91748 1.22158 0.99503 1.01184 0.97603 0.95578 0.94785 0.92855 0.93493 0.71986 0.89504 0.89224 0.86403 0.90574 0.92847 0.92518 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.46 8.44 71.98 0.61 -5.85 16 2 C 0.07 3.13 1.08 -11.54 -0.01 3.12 16 3 H 0.03 1.70 6.00 -2.38 -0.01 1.68 16 4 C -0.47 -24.92 4.01 25.60 0.10 -24.81 16 5 H 0.04 2.41 6.27 -2.91 -0.02 2.40 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -52.85 11.37 21.45 0.24 -52.60 16 8 Si 0.93 44.87 29.54 68.60 2.03 46.89 16 9 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 10 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 C -0.07 -2.87 0.38 -51.94 -0.02 -2.89 16 13 C 0.49 18.61 5.94 71.23 0.42 19.03 16 14 O -0.51 -23.70 13.30 21.97 0.29 -23.40 16 15 O -0.51 -14.39 13.06 -51.45 -0.67 -15.06 16 16 C -0.14 -4.19 5.05 31.89 0.16 -4.02 16 17 C 0.05 1.29 7.73 72.67 0.56 1.85 16 18 O -0.39 -13.13 11.19 -148.98 -1.67 -14.80 16 19 C 0.10 3.82 3.60 30.96 0.11 3.93 16 20 H 0.06 2.31 7.51 -2.39 -0.02 2.29 16 21 C -0.15 -5.87 8.23 71.98 0.59 -5.28 16 22 H 0.03 1.29 6.35 -2.39 -0.02 1.28 16 23 H 0.03 1.39 6.55 -2.39 -0.02 1.37 16 24 H 0.05 2.88 6.19 -2.39 -0.01 2.86 16 25 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 26 H 0.42 7.84 9.10 -74.05 -0.67 7.17 16 27 H 0.09 2.72 7.22 -2.39 -0.02 2.71 16 28 H 0.09 2.47 7.86 -2.39 -0.02 2.45 16 29 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 2.29 6.05 -2.39 -0.01 2.28 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.08 3.70 5.30 -2.38 -0.01 3.69 16 Total: -1.00 -64.71 256.68 3.66 -61.05 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.46 Total: 11.80 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 2.98 Total: -13.88 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.24 Total: -52.60 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -2.05 Total: -53.26 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -64.71 3.66 -61.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691808499.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.388 kcal (2) G-P(sol) polarization free energy of solvation -64.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds