Wall clock time and date at job start Mon Mar 30 2020 03:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46647 * 2 1 4 4 H 1.09004 * 109.46674 * 307.87024 * 3 2 1 5 5 C 1.50699 * 109.46800 * 187.87506 * 3 2 1 6 6 H 1.07998 * 120.00263 * 240.42858 * 5 3 2 7 7 C 1.37880 * 119.99769 * 60.42602 * 5 3 2 8 8 N 1.31518 * 119.99622 * 179.97438 * 7 5 3 9 9 Si 1.86793 * 120.00350 * 0.02562 * 7 5 3 10 10 H 1.48508 * 109.46832 * 269.99728 * 9 7 5 11 11 H 1.48493 * 109.47367 * 29.99384 * 9 7 5 12 12 H 1.48503 * 109.47353 * 150.00112 * 9 7 5 13 13 C 1.52990 * 109.47185 * 67.87582 * 3 2 1 14 14 C 1.50704 * 109.87290 * 291.53862 * 13 3 2 15 15 O 1.20830 * 119.99651 * 331.14445 * 14 13 3 16 16 O 1.34225 * 120.00450 * 151.15093 * 14 13 3 17 17 C 1.54099 * 109.87727 * 170.53122 * 13 3 2 18 18 C 1.54811 * 104.19090 * 242.60219 * 17 13 3 19 19 C 1.54999 * 102.08829 * 20.87901 * 18 17 13 20 20 O 1.43744 * 109.88094 * 52.70171 * 13 3 2 21 21 H 1.08997 * 109.47159 * 48.98658 * 1 2 3 22 22 H 1.09002 * 109.46909 * 168.98314 * 1 2 3 23 23 H 1.08998 * 109.47412 * 288.98164 * 1 2 3 24 24 H 1.09002 * 109.47259 * 239.99793 * 2 1 3 25 25 H 1.08997 * 109.47115 * 119.99606 * 2 1 3 26 26 H 0.96998 * 120.00022 * 179.97438 * 8 7 5 27 27 H 0.96703 * 116.99977 * 180.02562 * 16 14 13 28 28 H 1.09001 * 110.49221 * 1.28427 * 17 13 3 29 29 H 1.09005 * 110.48680 * 123.92759 * 17 13 3 30 30 H 1.08997 * 110.90965 * 139.07762 * 18 17 13 31 31 H 1.08996 * 110.90936 * 262.68340 * 18 17 13 32 32 H 1.09006 * 110.61605 * 81.47985 * 19 18 17 33 33 H 1.08996 * 110.62212 * 204.47103 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5662 1.9953 -0.8113 5 6 3.5343 1.4471 -0.1947 6 1 4.1762 1.8726 0.5624 7 6 4.0820 0.9078 -1.3394 8 7 5.3861 0.9123 -1.5095 9 14 2.9717 0.1724 -2.6492 10 1 2.7627 -1.2707 -2.3676 11 1 1.6627 0.8733 -2.6391 12 1 3.6072 0.3295 -3.9821 13 6 1.6977 2.1045 1.3362 14 6 0.2066 2.2923 1.4478 15 8 -0.4596 2.4425 0.4510 16 8 -0.3814 2.2930 2.6544 17 6 2.4071 3.4684 1.4422 18 6 3.3557 3.3095 2.6552 19 6 3.4920 1.7692 2.7612 20 8 2.1732 1.2901 2.4211 21 1 -0.3633 0.6744 -0.7754 22 1 -0.3633 -1.0088 -0.1964 23 1 -0.3634 0.3342 0.9717 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 5.7715 0.5326 -2.3146 27 1 -1.3403 2.4166 2.6755 28 1 2.9773 3.6733 0.5361 29 1 1.6826 4.2619 1.6258 30 1 4.3221 3.7728 2.4566 31 1 2.9058 3.7232 3.5577 32 1 4.2301 1.3993 2.0495 33 1 3.7566 1.4762 3.7771 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691808596.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:40 Heat of formation + Delta-G solvation = -127.535193 kcal Electronic energy + Delta-G solvation = -17598.720800 eV Core-core repulsion = 14818.069496 eV Total energy + Delta-G solvation = -2780.651304 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.59048 -38.45706 -35.91229 -34.33056 -32.06881 -31.54888 -29.41056 -27.36061 -23.72575 -22.70320 -21.84803 -20.68989 -18.89264 -18.04513 -17.31153 -16.08329 -15.78654 -14.82784 -14.68004 -14.34692 -13.83981 -13.36371 -12.97981 -12.65213 -12.45101 -11.92100 -11.77653 -11.34115 -11.19320 -11.10438 -10.89129 -10.80926 -10.67378 -10.53115 -10.10088 -9.78428 -9.63361 -9.44541 -9.05885 -8.56839 -8.49674 -6.12384 -4.12826 2.60683 3.28820 3.39926 3.45614 3.47522 4.39748 4.51140 5.13155 5.19473 5.31859 5.42283 5.64500 5.85177 5.90726 6.08146 6.12726 6.19183 6.26355 6.30988 6.36801 6.59901 6.65958 6.75002 6.83243 6.87831 6.96337 7.04393 7.36071 7.60311 7.66899 8.33699 8.41975 8.86054 9.48806 10.98060 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.026699 B = 0.014171 C = 0.010703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.482121 B = 1975.457738 C = 2615.409834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C 0.015 3.985 4 H 0.049 0.951 5 C -0.521 4.521 6 H 0.093 0.907 7 C 0.077 3.923 8 N -0.896 5.896 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.261 1.261 12 H -0.298 1.298 13 C 0.138 3.862 14 C 0.491 3.509 15 O -0.510 6.510 16 O -0.510 6.510 17 C -0.132 4.132 18 C -0.147 4.147 19 C 0.040 3.960 20 O -0.353 6.353 21 H 0.062 0.938 22 H 0.035 0.965 23 H 0.039 0.961 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.265 0.735 27 H 0.395 0.605 28 H 0.110 0.890 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 3.044 7.185 10.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.004 4.004 4 H 0.067 0.933 5 C -0.558 4.558 6 H 0.111 0.889 7 C -0.126 4.126 8 N -0.534 5.534 9 Si 0.710 3.290 10 H -0.205 1.205 11 H -0.186 1.186 12 H -0.226 1.226 13 C 0.096 3.904 14 C 0.334 3.666 15 O -0.398 6.398 16 O -0.320 6.320 17 C -0.170 4.170 18 C -0.185 4.185 19 C -0.036 4.036 20 O -0.272 6.272 21 H 0.081 0.919 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.252 0.748 28 H 0.128 0.872 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.446 2.811 6.879 9.837 hybrid contribution -1.132 -0.314 -0.836 1.442 sum -7.578 2.497 6.043 10.009 Atomic orbital electron populations 1.22220 0.98106 1.00077 1.00737 1.21887 0.93154 0.99691 1.01583 1.19653 0.98285 0.92333 0.90162 0.93262 1.21112 0.88718 1.40273 1.05708 0.88949 1.24913 0.94769 0.95152 0.97720 1.69864 1.10193 1.45557 1.27785 0.86946 0.81596 0.79885 0.80619 1.20528 1.18589 1.22571 1.22006 0.83995 0.92749 0.91609 1.23748 0.91616 0.71081 0.80156 1.90694 1.65019 1.46078 1.38009 1.84717 1.28025 1.84592 1.34688 1.22928 0.98378 0.94333 1.01334 1.23034 1.00035 0.97924 0.97502 1.23924 0.86688 0.92151 1.00822 1.88815 1.31565 1.56247 1.50603 0.91932 0.94572 0.94205 0.93085 0.91310 0.92536 0.74845 0.87154 0.92223 0.90131 0.91623 0.88399 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.20 37.16 0.30 -2.87 16 2 C -0.13 -2.89 4.78 -26.73 -0.13 -3.01 16 3 C 0.01 0.35 0.82 -91.77 -0.08 0.27 16 4 H 0.05 1.24 6.51 -51.93 -0.34 0.90 16 5 C -0.52 -13.50 7.09 -34.44 -0.24 -13.74 16 6 H 0.09 2.42 4.37 -52.49 -0.23 2.19 16 7 C 0.08 2.11 5.45 -17.82 -0.10 2.02 16 8 N -0.90 -26.03 13.96 55.43 0.77 -25.26 16 9 Si 0.88 21.88 24.44 -169.99 -4.15 17.73 16 10 H -0.28 -6.84 6.81 56.52 0.38 -6.45 16 11 H -0.26 -6.42 6.52 56.52 0.37 -6.05 16 12 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 13 C 0.14 2.82 0.76 -91.20 -0.07 2.75 16 14 C 0.49 9.40 4.34 36.01 0.16 9.56 16 15 O -0.51 -10.55 13.85 -18.75 -0.26 -10.81 16 16 O -0.51 -8.02 13.13 -44.56 -0.59 -8.61 16 17 C -0.13 -2.41 5.65 -25.20 -0.14 -2.56 16 18 C -0.15 -2.36 6.95 -24.72 -0.17 -2.53 16 19 C 0.04 0.72 7.05 38.21 0.27 0.99 16 20 O -0.35 -7.23 9.49 -49.74 -0.47 -7.71 16 21 H 0.06 1.34 6.79 -51.93 -0.35 0.99 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.04 0.78 5.45 -51.93 -0.28 0.50 16 24 H 0.05 1.23 3.29 -51.93 -0.17 1.06 16 25 H 0.07 1.58 7.26 -51.93 -0.38 1.20 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.39 4.13 9.10 45.56 0.41 4.55 16 28 H 0.11 2.19 6.67 -51.93 -0.35 1.84 16 29 H 0.06 0.97 7.69 -51.93 -0.40 0.57 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.10 2.02 5.40 -51.93 -0.28 1.74 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 249.82 15.07 3.76 3.76 Total: -1.00 -30.35 249.82 -4.37 -34.72 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -3.24 Total: 5.29 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -0.20 Total: -9.13 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.77 Total: -25.26 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -1.32 Total: -27.12 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.15 Total: 17.73 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.35 -4.37 -34.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691808596.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.816 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds