Wall clock time and date at job start Mon Mar 30 2020 03:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46647 * 2 1 4 4 H 1.09004 * 109.46674 * 307.87024 * 3 2 1 5 5 C 1.50699 * 109.46800 * 187.87506 * 3 2 1 6 6 H 1.07998 * 120.00263 * 240.42858 * 5 3 2 7 7 C 1.37880 * 119.99769 * 60.42602 * 5 3 2 8 8 N 1.31518 * 119.99622 * 179.97438 * 7 5 3 9 9 Si 1.86793 * 120.00350 * 0.02562 * 7 5 3 10 10 H 1.48508 * 109.46832 * 269.99728 * 9 7 5 11 11 H 1.48493 * 109.47367 * 29.99384 * 9 7 5 12 12 H 1.48503 * 109.47353 * 150.00112 * 9 7 5 13 13 C 1.52990 * 109.47185 * 67.87582 * 3 2 1 14 14 C 1.50704 * 109.87290 * 291.53862 * 13 3 2 15 15 O 1.20830 * 119.99651 * 331.14445 * 14 13 3 16 16 O 1.34225 * 120.00450 * 151.15093 * 14 13 3 17 17 C 1.54099 * 109.87727 * 170.53122 * 13 3 2 18 18 C 1.54811 * 104.19090 * 242.60219 * 17 13 3 19 19 C 1.54999 * 102.08829 * 20.87901 * 18 17 13 20 20 O 1.43744 * 109.88094 * 52.70171 * 13 3 2 21 21 H 1.08997 * 109.47159 * 48.98658 * 1 2 3 22 22 H 1.09002 * 109.46909 * 168.98314 * 1 2 3 23 23 H 1.08998 * 109.47412 * 288.98164 * 1 2 3 24 24 H 1.09002 * 109.47259 * 239.99793 * 2 1 3 25 25 H 1.08997 * 109.47115 * 119.99606 * 2 1 3 26 26 H 0.96998 * 120.00022 * 179.97438 * 8 7 5 27 27 H 0.96703 * 116.99977 * 180.02562 * 16 14 13 28 28 H 1.09001 * 110.49221 * 1.28427 * 17 13 3 29 29 H 1.09005 * 110.48680 * 123.92759 * 17 13 3 30 30 H 1.08997 * 110.90965 * 139.07762 * 18 17 13 31 31 H 1.08996 * 110.90936 * 262.68340 * 18 17 13 32 32 H 1.09006 * 110.61605 * 81.47985 * 19 18 17 33 33 H 1.08996 * 110.62212 * 204.47103 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5662 1.9953 -0.8113 5 6 3.5343 1.4471 -0.1947 6 1 4.1762 1.8726 0.5624 7 6 4.0820 0.9078 -1.3394 8 7 5.3861 0.9123 -1.5095 9 14 2.9717 0.1724 -2.6492 10 1 2.7627 -1.2707 -2.3676 11 1 1.6627 0.8733 -2.6391 12 1 3.6072 0.3295 -3.9821 13 6 1.6977 2.1045 1.3362 14 6 0.2066 2.2923 1.4478 15 8 -0.4596 2.4425 0.4510 16 8 -0.3814 2.2930 2.6544 17 6 2.4071 3.4684 1.4422 18 6 3.3557 3.3095 2.6552 19 6 3.4920 1.7692 2.7612 20 8 2.1732 1.2901 2.4211 21 1 -0.3633 0.6744 -0.7754 22 1 -0.3633 -1.0088 -0.1964 23 1 -0.3634 0.3342 0.9717 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 5.7715 0.5326 -2.3146 27 1 -1.3403 2.4166 2.6755 28 1 2.9773 3.6733 0.5361 29 1 1.6826 4.2619 1.6258 30 1 4.3221 3.7728 2.4566 31 1 2.9058 3.7232 3.5577 32 1 4.2301 1.3993 2.0495 33 1 3.7566 1.4762 3.7771 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691808596.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:40 Heat of formation + Delta-G solvation = -149.078670 kcal Electronic energy + Delta-G solvation = -17599.654996 eV Core-core repulsion = 14818.069496 eV Total energy + Delta-G solvation = -2781.585500 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.10689 -39.94005 -37.34035 -36.08707 -34.03610 -33.07365 -30.95406 -29.19683 -25.24128 -24.53276 -23.41608 -22.17702 -20.56479 -19.69630 -18.86377 -17.69036 -17.46531 -16.55936 -16.33878 -15.78085 -15.59354 -14.98614 -14.61215 -14.29519 -14.10478 -13.61656 -13.50276 -13.00315 -12.75521 -12.72055 -12.55362 -12.52140 -12.17258 -12.06600 -11.81404 -11.49186 -11.33947 -11.22204 -10.88148 -10.64532 -10.20064 -8.24885 -6.25612 1.12629 1.28376 1.36240 1.45248 2.09842 2.34106 3.00961 3.12389 3.69283 3.85910 3.95418 4.18354 4.29166 4.35548 4.45488 4.57776 4.65354 4.87044 4.92579 4.95884 5.03113 5.07554 5.10239 5.17805 5.22816 5.36049 5.51485 5.63464 5.68071 6.01415 6.32004 6.78916 7.05782 7.37511 8.87748 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.026699 B = 0.014171 C = 0.010703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.482121 B = 1975.457738 C = 2615.409834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.012 3.988 4 H 0.032 0.968 5 C -0.507 4.507 6 H 0.085 0.915 7 C 0.028 3.972 8 N -0.937 5.937 9 Si 0.922 3.078 10 H -0.273 1.273 11 H -0.258 1.258 12 H -0.300 1.300 13 C 0.130 3.870 14 C 0.499 3.501 15 O -0.530 6.530 16 O -0.499 6.499 17 C -0.134 4.134 18 C -0.136 4.136 19 C 0.035 3.965 20 O -0.363 6.363 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.048 0.952 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.264 0.736 27 H 0.421 0.579 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.326 3.385 8.701 12.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C -0.007 4.007 4 H 0.050 0.950 5 C -0.544 4.544 6 H 0.103 0.897 7 C -0.170 4.170 8 N -0.577 5.577 9 Si 0.751 3.249 10 H -0.200 1.200 11 H -0.183 1.183 12 H -0.228 1.228 13 C 0.089 3.911 14 C 0.343 3.657 15 O -0.420 6.420 16 O -0.312 6.312 17 C -0.172 4.172 18 C -0.173 4.173 19 C -0.041 4.041 20 O -0.282 6.282 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.282 0.718 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.073 3.153 8.421 12.084 hybrid contribution -0.656 -0.393 -1.198 1.422 sum -8.729 2.760 7.222 11.661 Atomic orbital electron populations 1.22108 0.95952 1.01235 1.00936 1.21832 0.95090 0.98867 1.00631 1.19552 0.96258 0.93004 0.91894 0.95024 1.21446 0.90311 1.37908 1.04776 0.89693 1.25510 0.95538 0.96286 0.99682 1.69960 1.11532 1.47707 1.28532 0.86238 0.80341 0.79551 0.78726 1.20004 1.18281 1.22812 1.21838 0.85786 0.93435 0.90084 1.23245 0.90918 0.70846 0.80713 1.90699 1.65285 1.47119 1.38880 1.84623 1.30360 1.83781 1.32442 1.22914 0.99002 0.93895 1.01395 1.23029 1.00234 0.96408 0.97640 1.23966 0.84966 0.93675 1.01473 1.88799 1.32417 1.56856 1.50168 0.92955 0.92410 0.93290 0.94522 0.91702 0.92690 0.71773 0.89612 0.90012 0.89238 0.88639 0.91882 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.67 8.20 71.98 0.59 -5.08 16 2 C -0.13 -5.70 4.78 30.60 0.15 -5.55 16 3 C 0.01 0.56 0.82 -11.54 -0.01 0.55 16 4 H 0.03 1.59 6.51 -2.39 -0.02 1.58 16 5 C -0.51 -26.61 7.09 25.60 0.18 -26.43 16 6 H 0.09 4.54 4.37 -2.91 -0.01 4.52 16 7 C 0.03 1.56 5.45 84.65 0.46 2.02 16 8 N -0.94 -55.73 13.96 21.45 0.30 -55.43 16 9 Si 0.92 45.52 24.44 68.60 1.68 47.20 16 10 H -0.27 -13.14 6.81 99.48 0.68 -12.46 16 11 H -0.26 -12.49 6.52 99.48 0.65 -11.84 16 12 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 13 C 0.13 5.12 0.76 -11.17 -0.01 5.11 16 14 C 0.50 17.82 4.34 71.24 0.31 18.13 16 15 O -0.53 -20.80 13.85 21.95 0.30 -20.50 16 16 O -0.50 -13.79 13.13 -46.28 -0.61 -14.39 16 17 C -0.13 -4.69 5.65 31.58 0.18 -4.51 16 18 C -0.14 -4.00 6.95 31.90 0.22 -3.78 16 19 C 0.03 1.20 7.05 72.67 0.51 1.71 16 20 O -0.36 -14.16 9.49 -135.11 -1.28 -15.44 16 21 H 0.05 2.15 6.79 -2.39 -0.02 2.13 16 22 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.05 1.80 5.45 -2.39 -0.01 1.79 16 24 H 0.04 1.74 3.29 -2.39 -0.01 1.73 16 25 H 0.06 2.92 7.26 -2.39 -0.02 2.91 16 26 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.42 7.02 9.10 -74.05 -0.67 6.35 16 28 H 0.09 3.39 6.67 -2.39 -0.02 3.38 16 29 H 0.08 2.46 7.69 -2.38 -0.02 2.44 16 30 H 0.09 2.47 8.14 -2.39 -0.02 2.46 16 31 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.06 2.61 5.40 -2.38 -0.01 2.60 16 33 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -64.77 249.82 3.35 -61.41 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.38 Total: 14.98 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 2.58 Total: -17.83 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.30 Total: -55.43 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -1.59 Total: -50.34 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.68 Total: 47.20 kcal Total: -64.77 3.35 -61.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691808596.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.665 kcal (2) G-P(sol) polarization free energy of solvation -64.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds