Wall clock time and date at job start Mon Mar 30 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47298 * 2 1 4 4 H 1.08999 * 109.47236 * 305.78639 * 3 2 1 5 5 C 1.50707 * 109.46642 * 65.78622 * 3 2 1 6 6 H 1.07989 * 120.00057 * 59.38812 * 5 3 2 7 7 C 1.37877 * 119.99549 * 239.11360 * 5 3 2 8 8 N 1.31519 * 120.00524 * 353.96426 * 7 5 3 9 9 Si 1.86800 * 119.99864 * 173.96990 * 7 5 3 10 10 H 1.48501 * 109.47201 * 59.99521 * 9 7 5 11 11 H 1.48500 * 109.47206 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47095 * 299.99887 * 9 7 5 13 13 C 1.52994 * 109.47218 * 185.78405 * 3 2 1 14 14 C 1.50703 * 109.87205 * 305.70310 * 13 3 2 15 15 O 1.20827 * 119.99828 * 335.00042 * 14 13 3 16 16 O 1.34228 * 119.99977 * 154.99729 * 14 13 3 17 17 C 1.54106 * 109.88019 * 184.69602 * 13 3 2 18 18 C 1.54806 * 104.18782 * 242.60925 * 17 13 3 19 19 C 1.54990 * 102.09429 * 20.87630 * 18 17 13 20 20 O 1.43743 * 109.87949 * 66.71294 * 13 3 2 21 21 H 1.09000 * 109.46843 * 293.36803 * 1 2 3 22 22 H 1.09005 * 109.46931 * 53.36913 * 1 2 3 23 23 H 1.09000 * 109.47045 * 173.36024 * 1 2 3 24 24 H 1.09006 * 109.47117 * 240.00537 * 2 1 3 25 25 H 1.08992 * 109.47269 * 120.00653 * 2 1 3 26 26 H 0.96997 * 120.00261 * 180.02562 * 8 7 5 27 27 H 0.96697 * 117.00111 * 179.97438 * 16 14 13 28 28 H 1.09001 * 110.48370 * 1.28674 * 17 13 3 29 29 H 1.08995 * 110.48420 * 123.92610 * 17 13 3 30 30 H 1.08993 * 110.90984 * 139.08001 * 18 17 13 31 31 H 1.09010 * 110.90378 * 262.68114 * 18 17 13 32 32 H 1.09002 * 110.61857 * 81.48381 * 19 18 17 33 33 H 1.09002 * 110.62215 * 204.47266 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5946 1.9854 -0.8336 5 6 1.6581 2.1103 1.2959 6 1 2.0022 1.7032 2.2351 7 6 0.8738 3.2442 1.2820 8 7 0.5578 3.8113 0.1382 9 14 0.2603 3.9752 2.8878 10 1 1.4201 4.3514 3.7356 11 1 -0.5558 5.1825 2.6023 12 1 -0.5707 2.9730 3.6024 13 6 3.5631 1.4449 -0.1454 14 6 4.1811 0.5804 0.9232 15 8 3.5906 0.3859 1.9593 16 8 5.3874 0.0265 0.7240 17 6 4.0984 2.8853 -0.0286 18 6 4.7483 3.1614 -1.4062 19 6 4.0568 2.1079 -2.3085 20 8 3.9308 0.9533 -1.4451 21 1 -0.3633 0.4076 0.9434 22 1 -0.3633 0.6132 -0.8247 23 1 -0.3633 -1.0208 -0.1188 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8898 26 1 0.0064 4.6093 0.1285 27 1 5.7430 -0.5198 1.4382 28 1 3.2806 3.5825 0.1541 29 1 4.8426 2.9525 0.7649 30 1 4.5242 4.1723 -1.7465 31 1 5.8250 2.9948 -1.3687 32 1 3.0749 2.4594 -2.6257 33 1 4.6793 1.8743 -3.1723 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691808598.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:43 Heat of formation + Delta-G solvation = -146.096884 kcal Electronic energy + Delta-G solvation = -17411.761589 eV Core-core repulsion = 14630.305390 eV Total energy + Delta-G solvation = -2781.456200 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.11947 -38.11400 -35.63843 -34.17149 -31.78734 -31.27383 -29.42455 -26.16402 -24.01419 -22.96454 -21.49056 -20.08284 -18.91959 -17.62507 -16.98500 -15.62145 -15.44233 -14.56739 -14.52296 -14.19547 -13.61839 -13.22007 -12.97043 -12.39117 -12.22632 -11.65022 -11.26201 -11.09790 -11.01232 -10.88248 -10.80140 -10.69965 -10.55059 -10.33546 -9.97024 -9.85213 -9.63375 -9.15367 -8.85542 -8.54403 -8.38039 -6.03485 -4.01072 2.96769 3.33638 3.37861 3.43505 3.77619 4.43472 4.64954 5.25258 5.31928 5.42391 5.56427 5.87066 5.90631 6.21730 6.26787 6.35648 6.38122 6.41234 6.52354 6.59789 6.90952 6.96669 7.07104 7.13291 7.20923 7.33744 7.45350 7.61960 7.82704 7.99239 8.47244 8.70873 9.19168 9.61302 11.05622 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.024254 B = 0.012222 C = 0.011470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.150611 B = 2290.345482 C = 2440.502751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.117 4.117 3 C 0.036 3.964 4 H 0.085 0.915 5 C -0.498 4.498 6 H 0.075 0.925 7 C 0.065 3.935 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.127 3.873 14 C 0.487 3.513 15 O -0.487 6.487 16 O -0.521 6.521 17 C -0.125 4.125 18 C -0.153 4.153 19 C 0.051 3.949 20 O -0.371 6.371 21 H 0.058 0.942 22 H 0.045 0.955 23 H 0.023 0.977 24 H 0.031 0.969 25 H 0.049 0.951 26 H 0.261 0.739 27 H 0.391 0.609 28 H 0.118 0.882 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.705 -2.174 -2.861 7.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.155 4.155 3 C 0.017 3.983 4 H 0.103 0.897 5 C -0.536 4.536 6 H 0.093 0.907 7 C -0.136 4.136 8 N -0.536 5.536 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.202 1.202 13 C 0.087 3.913 14 C 0.329 3.671 15 O -0.372 6.372 16 O -0.332 6.332 17 C -0.163 4.163 18 C -0.191 4.191 19 C -0.026 4.026 20 O -0.290 6.290 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.042 0.958 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.247 0.753 28 H 0.136 0.864 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.286 -2.039 -3.012 7.262 hybrid contribution -0.106 0.306 1.443 1.479 sum 6.180 -1.733 -1.568 6.607 Atomic orbital electron populations 1.21486 0.96591 0.97925 1.02246 1.21684 0.95873 0.99115 0.98862 1.19412 0.85095 0.93259 1.00521 0.89699 1.21322 1.30230 1.09052 0.92953 0.90675 1.24998 0.96106 0.96644 0.95885 1.69882 1.38186 1.20861 1.24642 0.86732 0.79024 0.78331 0.84387 1.20355 1.21529 1.20206 1.22836 0.98510 0.90437 0.79548 1.23812 0.77747 0.77239 0.88342 1.90670 1.61662 1.56710 1.28202 1.84718 1.36106 1.62780 1.49569 1.22850 1.01357 0.96088 0.96005 1.23104 0.99779 0.99919 0.96273 1.23513 0.99881 0.85808 0.93376 1.88918 1.90458 1.29738 1.19916 0.92293 0.93613 0.95776 0.95019 0.93203 0.92918 0.75309 0.86354 0.92336 0.90472 0.91555 0.91557 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.63 37.16 0.36 -2.39 16 2 C -0.12 -2.72 4.87 -26.73 -0.13 -2.85 16 3 C 0.04 0.88 1.55 -91.77 -0.14 0.73 16 4 H 0.08 2.24 6.78 -51.93 -0.35 1.89 16 5 C -0.50 -13.13 5.47 -34.44 -0.19 -13.32 16 6 H 0.08 2.11 5.91 -52.49 -0.31 1.80 16 7 C 0.06 1.71 4.96 -17.82 -0.09 1.62 16 8 N -0.90 -24.16 12.58 55.43 0.70 -23.46 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.13 2.79 0.57 -91.20 -0.05 2.74 16 14 C 0.49 10.47 6.22 36.01 0.22 10.70 16 15 O -0.49 -11.56 13.15 -18.75 -0.25 -11.80 16 16 O -0.52 -9.19 13.18 -44.32 -0.58 -9.78 16 17 C -0.13 -2.56 5.80 -25.20 -0.15 -2.71 16 18 C -0.15 -2.54 7.15 -24.73 -0.18 -2.72 16 19 C 0.05 0.88 7.64 38.21 0.29 1.17 16 20 O -0.37 -7.69 10.21 -48.70 -0.50 -8.19 16 21 H 0.06 1.38 7.62 -51.93 -0.40 0.98 16 22 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.03 0.70 7.75 -51.93 -0.40 0.30 16 25 H 0.05 1.20 6.23 -51.93 -0.32 0.87 16 26 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.39 4.86 9.10 45.56 0.41 5.28 16 28 H 0.12 2.74 6.46 -51.93 -0.34 2.41 16 29 H 0.06 1.14 7.69 -51.93 -0.40 0.74 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 32 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 268.43 15.07 4.05 4.05 Total: -1.00 -29.37 268.43 -5.43 -34.80 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -3.77 Total: 5.28 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -0.05 Total: -7.03 kcal Atomic # 7 Polarization: -24.16 SS G_CDS: 0.70 Total: -23.46 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -1.33 Total: -29.77 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.37 -5.43 -34.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691808598.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.297 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds