Wall clock time and date at job start Mon Mar 30 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47298 * 2 1 4 4 H 1.08999 * 109.47236 * 305.78639 * 3 2 1 5 5 C 1.50707 * 109.46642 * 65.78622 * 3 2 1 6 6 H 1.07989 * 120.00057 * 59.38812 * 5 3 2 7 7 C 1.37877 * 119.99549 * 239.11360 * 5 3 2 8 8 N 1.31519 * 120.00524 * 353.96426 * 7 5 3 9 9 Si 1.86800 * 119.99864 * 173.96990 * 7 5 3 10 10 H 1.48501 * 109.47201 * 59.99521 * 9 7 5 11 11 H 1.48500 * 109.47206 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47095 * 299.99887 * 9 7 5 13 13 C 1.52994 * 109.47218 * 185.78405 * 3 2 1 14 14 C 1.50703 * 109.87205 * 305.70310 * 13 3 2 15 15 O 1.20827 * 119.99828 * 335.00042 * 14 13 3 16 16 O 1.34228 * 119.99977 * 154.99729 * 14 13 3 17 17 C 1.54106 * 109.88019 * 184.69602 * 13 3 2 18 18 C 1.54806 * 104.18782 * 242.60925 * 17 13 3 19 19 C 1.54990 * 102.09429 * 20.87630 * 18 17 13 20 20 O 1.43743 * 109.87949 * 66.71294 * 13 3 2 21 21 H 1.09000 * 109.46843 * 293.36803 * 1 2 3 22 22 H 1.09005 * 109.46931 * 53.36913 * 1 2 3 23 23 H 1.09000 * 109.47045 * 173.36024 * 1 2 3 24 24 H 1.09006 * 109.47117 * 240.00537 * 2 1 3 25 25 H 1.08992 * 109.47269 * 120.00653 * 2 1 3 26 26 H 0.96997 * 120.00261 * 180.02562 * 8 7 5 27 27 H 0.96697 * 117.00111 * 179.97438 * 16 14 13 28 28 H 1.09001 * 110.48370 * 1.28674 * 17 13 3 29 29 H 1.08995 * 110.48420 * 123.92610 * 17 13 3 30 30 H 1.08993 * 110.90984 * 139.08001 * 18 17 13 31 31 H 1.09010 * 110.90378 * 262.68114 * 18 17 13 32 32 H 1.09002 * 110.61857 * 81.48381 * 19 18 17 33 33 H 1.09002 * 110.62215 * 204.47266 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5946 1.9854 -0.8336 5 6 1.6581 2.1103 1.2959 6 1 2.0022 1.7032 2.2351 7 6 0.8738 3.2442 1.2820 8 7 0.5578 3.8113 0.1382 9 14 0.2603 3.9752 2.8878 10 1 1.4201 4.3514 3.7356 11 1 -0.5558 5.1825 2.6023 12 1 -0.5707 2.9730 3.6024 13 6 3.5631 1.4449 -0.1454 14 6 4.1811 0.5804 0.9232 15 8 3.5906 0.3859 1.9593 16 8 5.3874 0.0265 0.7240 17 6 4.0984 2.8853 -0.0286 18 6 4.7483 3.1614 -1.4062 19 6 4.0568 2.1079 -2.3085 20 8 3.9308 0.9533 -1.4451 21 1 -0.3633 0.4076 0.9434 22 1 -0.3633 0.6132 -0.8247 23 1 -0.3633 -1.0208 -0.1188 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8898 26 1 0.0064 4.6093 0.1285 27 1 5.7430 -0.5198 1.4382 28 1 3.2806 3.5825 0.1541 29 1 4.8426 2.9525 0.7649 30 1 4.5242 4.1723 -1.7465 31 1 5.8250 2.9948 -1.3687 32 1 3.0749 2.4594 -2.6257 33 1 4.6793 1.8743 -3.1723 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691808598.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:43 Heat of formation + Delta-G solvation = -165.184620 kcal Electronic energy + Delta-G solvation = -17412.589296 eV Core-core repulsion = 14630.305390 eV Total energy + Delta-G solvation = -2782.283906 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.76363 -39.69185 -37.26132 -35.99299 -33.67396 -32.89085 -31.05139 -28.01667 -25.82015 -24.64329 -23.03054 -21.73535 -20.67447 -19.32852 -18.72944 -17.32779 -17.06233 -16.45301 -16.17765 -15.73380 -15.25773 -15.05058 -14.59979 -14.08555 -13.92621 -13.36136 -13.02899 -12.89913 -12.83671 -12.55083 -12.49134 -12.31212 -12.20435 -12.02656 -11.73484 -11.63497 -11.25768 -10.95225 -10.78385 -10.48092 -10.21922 -8.06453 -6.07562 1.29891 1.41717 1.43865 1.50935 2.24803 2.47266 3.12032 3.25272 3.82776 3.99245 4.04218 4.30662 4.50630 4.51822 4.67498 4.74268 4.82649 4.94196 5.04764 5.10919 5.12878 5.21889 5.30661 5.41186 5.52669 5.63692 5.64381 5.82393 5.94595 6.01477 6.49952 7.05831 7.23859 7.55802 9.01975 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.024254 B = 0.012222 C = 0.011470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.150611 B = 2290.345482 C = 2440.502751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.115 4.115 3 C 0.038 3.962 4 H 0.060 0.940 5 C -0.499 4.499 6 H 0.056 0.944 7 C 0.031 3.969 8 N -0.915 5.915 9 Si 0.931 3.069 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.280 1.280 13 C 0.123 3.877 14 C 0.491 3.509 15 O -0.518 6.518 16 O -0.509 6.509 17 C -0.128 4.128 18 C -0.141 4.141 19 C 0.045 3.955 20 O -0.380 6.380 21 H 0.038 0.962 22 H 0.037 0.963 23 H 0.054 0.946 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.261 0.739 27 H 0.416 0.584 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.903 -2.425 -3.413 8.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 C 0.019 3.981 4 H 0.078 0.922 5 C -0.537 4.537 6 H 0.074 0.926 7 C -0.168 4.168 8 N -0.554 5.554 9 Si 0.759 3.241 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.206 1.206 13 C 0.082 3.918 14 C 0.334 3.666 15 O -0.406 6.406 16 O -0.321 6.321 17 C -0.166 4.166 18 C -0.178 4.178 19 C -0.031 4.031 20 O -0.300 6.300 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.276 0.724 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.511 -2.302 -3.569 8.628 hybrid contribution -0.413 0.323 1.584 1.668 sum 7.098 -1.979 -1.985 7.631 Atomic orbital electron populations 1.21405 0.95872 0.99522 1.00732 1.21634 0.96550 0.98435 0.98631 1.19255 0.87159 0.93221 0.98482 0.92205 1.21299 1.30228 1.09182 0.93008 0.92609 1.25454 0.96380 0.97051 0.97942 1.69960 1.38684 1.21106 1.25679 0.86032 0.78501 0.77772 0.81822 1.20282 1.20856 1.20577 1.22525 0.97074 0.91589 0.80616 1.23613 0.78467 0.76942 0.87616 1.90663 1.62747 1.57904 1.29268 1.84621 1.34216 1.62674 1.50626 1.22776 1.00654 0.94524 0.98649 1.23096 1.00778 1.00576 0.93389 1.23760 1.00138 0.85117 0.94115 1.88892 1.90269 1.31249 1.19607 0.94322 0.94390 0.92713 0.94140 0.94239 0.92994 0.72369 0.89563 0.91867 0.88996 0.89061 0.92946 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 9.63 71.98 0.69 -4.46 16 2 C -0.11 -5.30 4.87 30.60 0.15 -5.15 16 3 C 0.04 1.86 1.55 -11.54 -0.02 1.84 16 4 H 0.06 3.22 6.78 -2.39 -0.02 3.21 16 5 C -0.50 -26.74 5.47 25.60 0.14 -26.60 16 6 H 0.06 3.20 5.91 -2.92 -0.02 3.18 16 7 C 0.03 1.65 4.96 84.65 0.42 2.07 16 8 N -0.91 -49.89 12.58 21.45 0.27 -49.62 16 9 Si 0.93 43.66 29.54 68.60 2.03 45.68 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 C 0.12 5.30 0.57 -11.17 -0.01 5.29 16 14 C 0.49 20.59 6.22 71.24 0.44 21.04 16 15 O -0.52 -24.48 13.15 21.96 0.29 -24.19 16 16 O -0.51 -16.69 13.18 -46.55 -0.61 -17.30 16 17 C -0.13 -5.14 5.80 31.59 0.18 -4.96 16 18 C -0.14 -4.33 7.15 31.89 0.23 -4.10 16 19 C 0.04 1.43 7.64 72.66 0.55 1.99 16 20 O -0.38 -15.10 10.21 -136.10 -1.39 -16.49 16 21 H 0.04 1.81 7.62 -2.39 -0.02 1.79 16 22 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 23 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.04 1.76 7.75 -2.38 -0.02 1.74 16 25 H 0.04 1.89 6.23 -2.39 -0.01 1.88 16 26 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 27 H 0.42 9.18 9.10 -74.06 -0.67 8.51 16 28 H 0.09 4.03 6.46 -2.39 -0.02 4.02 16 29 H 0.06 2.40 7.69 -2.39 -0.02 2.39 16 30 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.05 1.83 8.04 -2.39 -0.02 1.81 16 33 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -62.68 268.43 3.81 -58.87 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.44 Total: 16.11 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 2.79 Total: -13.05 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.27 Total: -49.62 kcal Atomic # 8 Polarization: -56.27 SS G_CDS: -1.71 Total: -57.99 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -62.68 3.81 -58.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691808598.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.318 kcal (2) G-P(sol) polarization free energy of solvation -62.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds