Wall clock time and date at job start Mon Mar 30 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47413 * 2 1 4 4 H 1.08993 * 109.47145 * 305.46224 * 3 2 1 5 5 C 1.50700 * 109.46704 * 65.45845 * 3 2 1 6 6 H 1.08006 * 119.99960 * 55.31490 * 5 3 2 7 7 C 1.37875 * 120.00270 * 235.31366 * 5 3 2 8 8 N 1.31520 * 119.99450 * 5.86026 * 7 5 3 9 9 Si 1.86799 * 120.00239 * 185.85971 * 7 5 3 10 10 H 1.48498 * 109.47292 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47051 * 119.99922 * 9 7 5 12 12 H 1.48499 * 109.46995 * 239.99751 * 9 7 5 13 13 C 1.52993 * 109.47053 * 185.45592 * 3 2 1 14 14 C 1.50706 * 110.46000 * 61.15501 * 13 3 2 15 15 O 1.20826 * 119.99512 * 358.09362 * 14 13 3 16 16 O 1.34222 * 120.00298 * 178.09516 * 14 13 3 17 17 C 1.54797 * 110.50765 * 183.87714 * 13 3 2 18 18 C 1.54484 * 103.92824 * 118.64589 * 17 13 3 19 19 O 1.44427 * 104.89973 * 24.00405 * 18 17 13 20 20 C 1.44429 * 105.27727 * 319.43670 * 19 18 17 21 21 H 1.09006 * 109.46640 * 294.45745 * 1 2 3 22 22 H 1.08997 * 109.47179 * 54.44741 * 1 2 3 23 23 H 1.08994 * 109.47219 * 174.45655 * 1 2 3 24 24 H 1.09011 * 109.46527 * 240.00138 * 2 1 3 25 25 H 1.08999 * 109.47272 * 120.00680 * 2 1 3 26 26 H 0.97000 * 119.99162 * 180.02562 * 8 7 5 27 27 H 0.96698 * 117.00020 * 180.02562 * 16 14 13 28 28 H 1.08999 * 110.60488 * 0.03166 * 17 13 3 29 29 H 1.08999 * 110.55621 * 237.22998 * 17 13 3 30 30 H 1.08997 * 110.36976 * 265.12221 * 18 17 13 31 31 H 1.09000 * 110.37310 * 142.89231 * 18 17 13 32 32 H 1.08996 * 110.37249 * 159.33715 * 20 19 18 33 33 H 1.09003 * 110.36993 * 281.68139 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5991 1.9838 -0.8370 5 6 1.6511 2.1127 1.2925 6 1 1.9346 1.6711 2.2365 7 6 0.9334 3.2897 1.2700 8 7 0.4890 3.7671 0.1279 9 14 0.5923 4.2063 2.8615 10 1 1.1963 3.4660 3.9983 11 1 1.1845 5.5661 2.7864 12 1 -0.8746 4.3158 3.0650 13 6 3.5639 1.4446 -0.1371 14 6 3.9767 0.8036 -1.4372 15 8 3.1387 0.3482 -2.1790 16 8 5.2751 0.7386 -1.7709 17 6 4.1149 2.8880 -0.0423 18 6 5.0335 2.8545 1.1993 19 8 5.4139 1.4686 1.3426 20 6 4.2160 0.7138 1.0576 21 1 -0.3633 0.4255 0.9355 22 1 -0.3633 0.5975 -0.8361 23 1 -0.3633 -1.0228 -0.0993 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 -0.0156 4.5954 0.1121 27 1 5.4910 0.3187 -2.6147 28 1 3.3025 3.6000 0.1028 29 1 4.6884 3.1382 -0.9349 30 1 4.4906 3.1922 2.0821 31 1 5.9147 3.4750 1.0362 32 1 4.4690 -0.3104 0.7836 33 1 3.5477 0.7232 1.9187 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691808647.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:49 Heat of formation + Delta-G solvation = -149.077613 kcal Electronic energy + Delta-G solvation = -17359.420779 eV Core-core repulsion = 14577.835326 eV Total energy + Delta-G solvation = -2781.585454 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.28237 -38.16139 -35.84903 -34.68501 -31.87895 -31.10191 -28.69539 -26.29141 -24.05479 -23.24639 -21.90609 -20.19513 -18.88561 -17.38964 -16.58629 -15.83698 -15.30615 -14.94649 -14.80907 -14.44059 -13.83492 -13.29822 -12.83334 -12.46206 -12.17390 -11.81594 -11.70693 -11.11277 -11.05525 -10.97339 -10.82296 -10.65371 -10.52629 -10.29833 -9.90129 -9.76235 -9.43369 -9.27888 -8.88212 -8.68657 -8.54119 -6.13588 -4.16917 2.83752 3.20782 3.31679 3.34460 3.69399 4.34243 4.64863 5.16144 5.37913 5.58396 5.62612 5.88608 5.91714 6.21902 6.29648 6.32829 6.39809 6.49272 6.52736 6.63017 6.88424 6.97507 7.00928 7.10193 7.19329 7.42304 7.45904 7.55355 7.74444 7.84790 8.27904 8.56143 8.96070 9.46172 10.94217 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.025062 B = 0.012903 C = 0.010226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.983217 B = 2169.555561 C = 2737.394405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.054 3.946 4 H 0.080 0.920 5 C -0.505 4.505 6 H 0.058 0.942 7 C 0.072 3.928 8 N -0.884 5.884 9 Si 0.882 3.118 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.284 1.284 13 C -0.071 4.071 14 C 0.483 3.517 15 O -0.511 6.511 16 O -0.517 6.517 17 C -0.126 4.126 18 C 0.054 3.946 19 O -0.383 6.383 20 C 0.069 3.931 21 H 0.056 0.944 22 H 0.046 0.954 23 H 0.022 0.978 24 H 0.050 0.950 25 H 0.034 0.966 26 H 0.262 0.738 27 H 0.393 0.607 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.335 -2.681 -0.289 6.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.035 3.965 4 H 0.098 0.902 5 C -0.543 4.543 6 H 0.076 0.924 7 C -0.131 4.131 8 N -0.521 5.521 9 Si 0.709 3.291 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.210 1.210 13 C -0.073 4.073 14 C 0.326 3.674 15 O -0.399 6.399 16 O -0.328 6.328 17 C -0.163 4.163 18 C -0.022 4.022 19 O -0.302 6.302 20 C -0.008 4.008 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.041 0.959 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.249 0.751 28 H 0.127 0.873 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.099 -2.540 -0.130 6.608 hybrid contribution -0.309 0.383 0.117 0.506 sum 5.790 -2.157 -0.013 6.179 Atomic orbital electron populations 1.21457 0.96569 0.97830 1.02250 1.21803 0.96123 0.99028 0.98980 1.18962 0.84248 0.93162 1.00079 0.90201 1.20975 1.34653 1.06956 0.91729 0.92424 1.24954 0.95022 0.97306 0.95824 1.69938 1.36151 1.21209 1.24793 0.86696 0.78197 0.79991 0.84196 1.19543 1.20851 1.21003 1.22569 1.02430 0.94795 0.87478 1.24163 0.78979 0.75515 0.88709 1.90614 1.52121 1.44772 1.52372 1.84706 1.29527 1.75278 1.43252 1.22918 0.99752 0.96275 0.97398 1.23315 0.97626 0.83488 0.97804 1.88996 1.32465 1.17401 1.91327 1.23442 0.86215 0.94364 0.96780 0.92464 0.93443 0.95933 0.93127 0.94700 0.92754 0.75055 0.87296 0.92496 0.91908 0.90387 0.90921 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.64 37.16 0.36 -2.30 16 2 C -0.12 -2.66 4.85 -26.73 -0.13 -2.79 16 3 C 0.05 1.27 1.12 -91.78 -0.10 1.16 16 4 H 0.08 2.16 6.90 -51.93 -0.36 1.80 16 5 C -0.51 -12.30 5.60 -34.44 -0.19 -12.50 16 6 H 0.06 1.40 6.58 -52.48 -0.35 1.06 16 7 C 0.07 1.81 4.81 -17.82 -0.09 1.73 16 8 N -0.88 -23.56 12.62 55.43 0.70 -22.86 16 9 Si 0.88 19.75 29.54 -169.99 -5.02 14.73 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C -0.07 -1.47 0.53 -153.93 -0.08 -1.55 16 14 C 0.48 9.62 6.47 36.01 0.23 9.86 16 15 O -0.51 -11.27 14.59 -18.75 -0.27 -11.55 16 16 O -0.52 -8.47 13.11 -39.24 -0.51 -8.99 16 17 C -0.13 -2.51 5.85 -25.01 -0.15 -2.65 16 18 C 0.05 0.98 7.62 37.94 0.29 1.27 16 19 O -0.38 -7.42 11.65 -35.23 -0.41 -7.83 16 20 C 0.07 1.33 5.56 37.94 0.21 1.54 16 21 H 0.06 1.27 7.58 -51.93 -0.39 0.88 16 22 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 1.12 5.53 -51.92 -0.29 0.83 16 25 H 0.03 0.72 7.39 -51.93 -0.38 0.33 16 26 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.39 4.45 9.10 45.56 0.41 4.86 16 28 H 0.11 2.43 6.55 -51.93 -0.34 2.09 16 29 H 0.06 1.06 7.60 -51.93 -0.39 0.67 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.31 7.86 -51.93 -0.41 0.90 16 33 H 0.09 1.73 5.91 -51.93 -0.31 1.42 16 LS Contribution 266.78 15.07 4.02 4.02 Total: -1.00 -28.13 266.78 -4.78 -32.91 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -3.63 Total: 5.81 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 0.35 Total: -6.23 kcal Atomic # 7 Polarization: -23.56 SS G_CDS: 0.70 Total: -22.86 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -1.20 Total: -28.37 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.13 -4.78 -32.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691808647.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.171 kcal (2) G-P(sol) polarization free energy of solvation -28.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds