Wall clock time and date at job start Mon Mar 30 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47413 * 2 1 4 4 H 1.08993 * 109.47145 * 305.46224 * 3 2 1 5 5 C 1.50700 * 109.46704 * 65.45845 * 3 2 1 6 6 H 1.08006 * 119.99960 * 55.31490 * 5 3 2 7 7 C 1.37875 * 120.00270 * 235.31366 * 5 3 2 8 8 N 1.31520 * 119.99450 * 5.86026 * 7 5 3 9 9 Si 1.86799 * 120.00239 * 185.85971 * 7 5 3 10 10 H 1.48498 * 109.47292 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47051 * 119.99922 * 9 7 5 12 12 H 1.48499 * 109.46995 * 239.99751 * 9 7 5 13 13 C 1.52993 * 109.47053 * 185.45592 * 3 2 1 14 14 C 1.50706 * 110.46000 * 61.15501 * 13 3 2 15 15 O 1.20826 * 119.99512 * 358.09362 * 14 13 3 16 16 O 1.34222 * 120.00298 * 178.09516 * 14 13 3 17 17 C 1.54797 * 110.50765 * 183.87714 * 13 3 2 18 18 C 1.54484 * 103.92824 * 118.64589 * 17 13 3 19 19 O 1.44427 * 104.89973 * 24.00405 * 18 17 13 20 20 C 1.44429 * 105.27727 * 319.43670 * 19 18 17 21 21 H 1.09006 * 109.46640 * 294.45745 * 1 2 3 22 22 H 1.08997 * 109.47179 * 54.44741 * 1 2 3 23 23 H 1.08994 * 109.47219 * 174.45655 * 1 2 3 24 24 H 1.09011 * 109.46527 * 240.00138 * 2 1 3 25 25 H 1.08999 * 109.47272 * 120.00680 * 2 1 3 26 26 H 0.97000 * 119.99162 * 180.02562 * 8 7 5 27 27 H 0.96698 * 117.00020 * 180.02562 * 16 14 13 28 28 H 1.08999 * 110.60488 * 0.03166 * 17 13 3 29 29 H 1.08999 * 110.55621 * 237.22998 * 17 13 3 30 30 H 1.08997 * 110.36976 * 265.12221 * 18 17 13 31 31 H 1.09000 * 110.37310 * 142.89231 * 18 17 13 32 32 H 1.08996 * 110.37249 * 159.33715 * 20 19 18 33 33 H 1.09003 * 110.36993 * 281.68139 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5991 1.9838 -0.8370 5 6 1.6511 2.1127 1.2925 6 1 1.9346 1.6711 2.2365 7 6 0.9334 3.2897 1.2700 8 7 0.4890 3.7671 0.1279 9 14 0.5923 4.2063 2.8615 10 1 1.1963 3.4660 3.9983 11 1 1.1845 5.5661 2.7864 12 1 -0.8746 4.3158 3.0650 13 6 3.5639 1.4446 -0.1371 14 6 3.9767 0.8036 -1.4372 15 8 3.1387 0.3482 -2.1790 16 8 5.2751 0.7386 -1.7709 17 6 4.1149 2.8880 -0.0423 18 6 5.0335 2.8545 1.1993 19 8 5.4139 1.4686 1.3426 20 6 4.2160 0.7138 1.0576 21 1 -0.3633 0.4255 0.9355 22 1 -0.3633 0.5975 -0.8361 23 1 -0.3633 -1.0228 -0.0993 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 -0.0156 4.5954 0.1121 27 1 5.4910 0.3187 -2.6147 28 1 3.3025 3.6000 0.1028 29 1 4.6884 3.1382 -0.9349 30 1 4.4906 3.1922 2.0821 31 1 5.9147 3.4750 1.0362 32 1 4.4690 -0.3104 0.7836 33 1 3.5477 0.7232 1.9187 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691808647.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:49 Heat of formation + Delta-G solvation = -167.699637 kcal Electronic energy + Delta-G solvation = -17360.228291 eV Core-core repulsion = 14577.835326 eV Total energy + Delta-G solvation = -2782.392965 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.85661 -39.69715 -37.39121 -36.37119 -33.76648 -32.74317 -30.24763 -28.14226 -25.74042 -24.92169 -23.43979 -21.88809 -20.56098 -18.92339 -18.34740 -17.49193 -16.86697 -16.57086 -16.35692 -16.21834 -15.36706 -15.03608 -14.41587 -14.27516 -13.75080 -13.60583 -13.28644 -12.85266 -12.70987 -12.63845 -12.45222 -12.30573 -12.19546 -12.02607 -11.64673 -11.46891 -11.13166 -10.94257 -10.65216 -10.48887 -10.35998 -8.06726 -6.13862 1.27136 1.42319 1.48728 1.56608 2.23375 2.49507 3.12990 3.27667 3.81167 4.03308 4.08191 4.34769 4.41356 4.56218 4.62634 4.76268 4.82996 4.89259 4.98239 5.08467 5.21339 5.27174 5.34672 5.36972 5.59674 5.71641 5.72542 5.80184 5.93443 5.95331 6.39045 7.01665 7.15269 7.51469 9.01764 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.025062 B = 0.012903 C = 0.010226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.983217 B = 2169.555561 C = 2737.394405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.058 3.942 4 H 0.036 0.964 5 C -0.499 4.499 6 H 0.059 0.941 7 C 0.032 3.968 8 N -0.918 5.918 9 Si 0.934 3.066 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.290 1.290 13 C -0.078 4.078 14 C 0.490 3.510 15 O -0.539 6.539 16 O -0.506 6.506 17 C -0.125 4.125 18 C 0.057 3.943 19 O -0.384 6.384 20 C 0.075 3.925 21 H 0.044 0.956 22 H 0.024 0.976 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.260 0.740 27 H 0.419 0.581 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.799 -3.301 0.489 8.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.157 4.157 3 C 0.039 3.961 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.077 0.923 7 C -0.168 4.168 8 N -0.557 5.557 9 Si 0.761 3.239 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.217 1.217 13 C -0.080 4.080 14 C 0.334 3.666 15 O -0.429 6.429 16 O -0.318 6.318 17 C -0.162 4.162 18 C -0.019 4.019 19 O -0.303 6.303 20 C -0.001 4.001 21 H 0.063 0.937 22 H 0.043 0.957 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.279 0.721 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.107 0.893 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.600 -3.173 0.650 8.261 hybrid contribution -0.710 0.538 -0.189 0.910 sum 6.890 -2.635 0.460 7.391 Atomic orbital electron populations 1.21388 0.96497 0.99085 1.00533 1.21769 0.96211 0.98230 0.99507 1.18757 0.86118 0.93269 0.97913 0.94528 1.21123 1.33756 1.06687 0.92106 0.92268 1.25510 0.95204 0.98183 0.97899 1.70068 1.37469 1.21609 1.26565 0.85870 0.77473 0.79054 0.81523 1.18676 1.20676 1.21689 1.22390 1.00786 0.95851 0.89002 1.23817 0.79742 0.74919 0.88089 1.90612 1.53143 1.46047 1.53083 1.84610 1.27131 1.75092 1.44998 1.22851 0.99338 0.95109 0.98934 1.23389 0.98514 0.83409 0.96587 1.88995 1.32201 1.17859 1.91249 1.23362 0.86111 0.94993 0.95677 0.93683 0.95722 0.93009 0.93279 0.93237 0.93098 0.72086 0.90139 0.91468 0.92252 0.87269 0.89336 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.64 71.98 0.69 -4.33 16 2 C -0.12 -5.16 4.85 30.59 0.15 -5.01 16 3 C 0.06 2.73 1.12 -11.54 -0.01 2.72 16 4 H 0.04 2.04 6.90 -2.39 -0.02 2.02 16 5 C -0.50 -24.23 5.60 25.60 0.14 -24.09 16 6 H 0.06 2.83 6.58 -2.91 -0.02 2.81 16 7 C 0.03 1.60 4.81 84.65 0.41 2.01 16 8 N -0.92 -50.20 12.62 21.45 0.27 -49.93 16 9 Si 0.93 40.52 29.54 68.60 2.03 42.55 16 10 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 12 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 13 C -0.08 -3.17 0.53 -51.81 -0.03 -3.20 16 14 C 0.49 18.77 6.47 71.24 0.46 19.23 16 15 O -0.54 -23.37 14.59 21.96 0.32 -23.05 16 16 O -0.51 -15.10 13.11 -51.34 -0.67 -15.77 16 17 C -0.12 -4.83 5.85 31.71 0.19 -4.65 16 18 C 0.06 1.94 7.62 72.49 0.55 2.49 16 19 O -0.38 -13.79 11.65 -148.98 -1.74 -15.52 16 20 C 0.08 2.75 5.56 72.49 0.40 3.15 16 21 H 0.04 1.99 7.58 -2.38 -0.02 1.97 16 22 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.05 2.14 5.53 -2.38 -0.01 2.13 16 25 H 0.05 1.97 7.39 -2.39 -0.02 1.95 16 26 H 0.26 13.69 8.31 -92.71 -0.77 12.91 16 27 H 0.42 8.11 9.10 -74.06 -0.67 7.44 16 28 H 0.08 3.62 6.55 -2.39 -0.02 3.60 16 29 H 0.07 2.41 7.60 -2.39 -0.02 2.39 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.09 2.95 7.86 -2.39 -0.02 2.93 16 33 H 0.08 3.00 5.91 -2.39 -0.01 2.99 16 Total: -1.00 -59.58 266.78 3.61 -55.97 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.45 Total: 17.42 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 2.95 Total: -11.67 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.27 Total: -49.93 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -2.09 Total: -54.34 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -59.58 3.61 -55.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691808647.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.734 kcal (2) G-P(sol) polarization free energy of solvation -59.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds