Wall clock time and date at job start Mon Mar 30 2020 03:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99984 * 2 1 4 4 H 1.48506 * 109.47036 * 239.99838 * 3 2 1 5 5 H 1.48500 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47409 * 119.99744 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47265 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47103 * 299.99702 * 10 9 7 12 12 O 1.20818 * 120.00197 * 239.72404 * 11 10 9 13 13 O 1.34230 * 119.99763 * 59.99917 * 11 10 9 14 14 C 1.52997 * 109.47232 * 59.99899 * 10 9 7 15 15 C 1.52997 * 109.47232 * 179.97438 * 14 10 9 16 16 C 1.52999 * 109.47592 * 300.00195 * 15 14 10 17 17 O 1.42895 * 109.47485 * 180.02562 * 16 15 14 18 18 C 1.53006 * 109.46885 * 59.99462 * 16 15 14 19 19 C 1.52997 * 109.47445 * 300.00628 * 18 16 15 20 20 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47247 * 59.99472 * 9 7 2 22 22 H 1.09001 * 109.47490 * 300.00104 * 9 7 2 23 23 H 0.96692 * 116.99954 * 180.02562 * 13 11 10 24 24 H 1.09001 * 109.46832 * 300.00199 * 14 10 9 25 25 H 1.09002 * 109.47153 * 60.00008 * 14 10 9 26 26 H 1.09000 * 109.47140 * 179.97438 * 15 14 10 27 27 H 1.09002 * 109.47045 * 59.99942 * 15 14 10 28 28 H 1.09002 * 109.46724 * 300.00504 * 16 15 14 29 29 H 0.96698 * 114.00355 * 59.99419 * 17 16 15 30 30 H 1.09001 * 109.46726 * 180.02562 * 18 16 15 31 31 H 1.09002 * 109.46589 * 60.00959 * 18 16 15 32 32 H 1.09002 * 109.47045 * 300.00058 * 19 18 16 33 33 H 1.09000 * 109.47140 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 3.1117 -3.5823 -1.2300 12 8 3.1205 -4.4940 -2.0228 13 8 3.8777 -2.5007 -1.4425 14 6 3.1249 -3.5810 1.2497 15 6 4.1187 -4.7443 1.2501 16 6 3.3533 -6.0691 1.2504 17 8 4.2815 -7.1555 1.2513 18 6 2.4736 -6.1501 0.0011 19 6 1.4798 -4.9868 0.0008 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 4.4160 -2.4949 -2.2457 24 1 3.6699 -2.6370 1.2497 25 1 2.4983 -3.6388 2.1397 26 1 4.7457 -4.6863 2.1398 27 1 4.7454 -4.6870 0.3600 28 1 2.7265 -6.1263 2.1403 29 1 4.8725 -7.1673 2.0165 30 1 1.9280 -7.0937 0.0016 31 1 3.1003 -6.0928 -0.8889 32 1 0.8531 -5.0441 0.8908 33 1 0.8528 -5.0448 -0.8890 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691808783.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:12 Heat of formation + Delta-G solvation = -188.744920 kcal Electronic energy + Delta-G solvation = -17040.693455 eV Core-core repulsion = 14257.387898 eV Total energy + Delta-G solvation = -2783.305557 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.92621 -39.25384 -37.08020 -36.90910 -34.81474 -32.34259 -31.75372 -28.25691 -25.18759 -24.62805 -23.65273 -21.74213 -20.51455 -18.83367 -18.28027 -18.11724 -17.19359 -16.65461 -16.13136 -15.63846 -15.43456 -14.72570 -14.54914 -14.17740 -13.83390 -13.46036 -13.37261 -13.12543 -13.02069 -12.72085 -12.59765 -12.40745 -12.18952 -12.02729 -11.71450 -11.37781 -11.11229 -11.01014 -10.80582 -10.54414 -10.46226 -8.10684 -6.16236 1.42898 1.46120 1.47663 1.55005 2.41935 2.48901 3.23980 3.34477 3.70946 3.79902 4.10612 4.14259 4.26512 4.45129 4.53001 4.55411 4.60784 4.86315 4.98701 5.07715 5.15458 5.19217 5.24359 5.36822 5.46727 5.48678 5.61179 5.85763 5.91405 6.29186 6.95985 6.99166 7.26573 7.51190 9.01493 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.038691 B = 0.008389 C = 0.008324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.509619 B = 3337.090433 C = 3363.008163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.001 4.001 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.512 4.512 8 H 0.087 0.913 9 C 0.040 3.960 10 C -0.046 4.046 11 C 0.505 3.495 12 O -0.556 6.556 13 O -0.494 6.494 14 C -0.091 4.091 15 C -0.147 4.147 16 C 0.109 3.891 17 O -0.584 6.584 18 C -0.123 4.123 19 C -0.093 4.093 20 H 0.259 0.741 21 H -0.014 1.014 22 H 0.020 0.980 23 H 0.407 0.593 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.394 0.606 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.247 -8.416 4.174 12.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.198 4.198 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.550 4.550 8 H 0.105 0.895 9 C 0.002 3.998 10 C -0.047 4.047 11 C 0.350 3.650 12 O -0.449 6.449 13 O -0.304 6.304 14 C -0.129 4.129 15 C -0.185 4.185 16 C 0.051 3.949 17 O -0.392 6.392 18 C -0.161 4.161 19 C -0.131 4.131 20 H 0.068 0.932 21 H 0.004 0.996 22 H 0.038 0.962 23 H 0.266 0.734 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.243 0.757 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.579 -8.671 3.773 12.119 hybrid contribution 0.499 1.279 -0.461 1.448 sum 8.078 -7.392 3.312 11.440 Atomic orbital electron populations 1.70094 1.07710 1.27377 1.52872 1.25848 0.95473 1.02882 0.95604 0.85643 0.78225 0.78898 0.79101 1.19701 1.21924 1.18973 1.21762 0.94425 0.90595 1.48223 0.89521 1.19033 0.93041 0.91679 0.96003 1.20744 0.94993 0.97765 0.91218 1.23592 0.76689 0.77633 0.87057 1.90540 1.66278 1.39635 1.48421 1.84825 1.54896 1.42787 1.47894 1.21446 0.96988 0.98876 0.95589 1.22324 0.98439 0.94973 1.02774 1.21798 0.89960 0.85007 0.98137 1.86471 1.51919 1.49533 1.51288 1.21673 0.97716 0.98111 0.98563 1.21423 0.97342 0.91489 1.02825 0.93234 0.99609 0.96188 0.73420 0.90680 0.89828 0.88650 0.93555 0.90816 0.75677 0.90924 0.91346 0.89279 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.34 13.29 21.45 0.28 -55.05 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.96 43.00 29.54 68.60 2.03 45.02 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.51 -26.65 7.33 25.60 0.19 -26.46 16 8 H 0.09 4.29 4.86 -2.91 -0.01 4.27 16 9 C 0.04 1.94 4.03 29.85 0.12 2.06 16 10 C -0.05 -1.80 0.51 -52.93 -0.03 -1.82 16 11 C 0.50 20.28 5.37 71.24 0.38 20.67 16 12 O -0.56 -23.60 14.41 21.99 0.32 -23.28 16 13 O -0.49 -18.25 10.52 -51.41 -0.54 -18.79 16 14 C -0.09 -3.01 4.42 30.59 0.14 -2.87 16 15 C -0.15 -3.97 5.32 30.59 0.16 -3.80 16 16 C 0.11 2.87 3.47 30.60 0.11 2.98 16 17 O -0.58 -14.43 13.32 -148.98 -1.98 -16.42 16 18 C -0.12 -3.90 5.28 30.60 0.16 -3.74 16 19 C -0.09 -3.23 4.37 30.59 0.13 -3.09 16 20 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 21 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 22 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.41 10.91 9.10 -74.06 -0.67 10.23 16 24 H 0.07 2.69 6.59 -2.39 -0.02 2.67 16 25 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.05 1.41 7.22 -2.39 -0.02 1.39 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.39 5.73 9.08 -74.06 -0.67 5.06 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 2.54 5.51 -2.39 -0.01 2.53 16 32 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.06 2.09 8.10 -2.39 -0.02 2.07 16 Total: -1.00 -67.07 263.72 1.72 -65.36 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -0.21 Total: 18.86 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 1.83 Total: -15.70 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.28 Total: -55.05 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -2.21 Total: -58.49 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -67.07 1.72 -65.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691808783.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.387 kcal (2) G-P(sol) polarization free energy of solvation -67.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds