Wall clock time and date at job start Mon Mar 30 2020 03:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00331 * 2 1 4 4 H 1.48501 * 109.46865 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46774 * 299.99510 * 3 2 1 6 6 H 1.48494 * 109.47123 * 59.99507 * 3 2 1 7 7 C 1.37875 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00571 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00289 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47467 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47044 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.57465 * 299.84404 * 11 10 9 13 13 O 1.20825 * 119.99832 * 240.15911 * 12 11 10 14 14 O 1.34228 * 120.00463 * 60.15780 * 12 11 10 15 15 C 1.53172 * 109.52171 * 179.68381 * 11 10 9 16 16 C 1.53174 * 109.03844 * 183.11296 * 15 11 10 17 17 C 1.53093 * 109.16375 * 56.98496 * 16 15 11 18 18 O 1.42905 * 109.41141 * 302.39044 * 17 16 15 19 19 C 1.42905 * 114.09920 * 61.15774 * 18 17 16 20 20 H 0.96998 * 120.00020 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47052 * 60.00040 * 9 7 2 22 22 H 1.09003 * 109.47095 * 300.00426 * 9 7 2 23 23 H 1.09001 * 109.46968 * 59.99969 * 10 9 7 24 24 H 1.09000 * 109.46648 * 299.99953 * 10 9 7 25 25 H 0.96692 * 117.00559 * 180.02562 * 14 12 11 26 26 H 1.09002 * 109.54386 * 63.24538 * 15 11 10 27 27 H 1.09002 * 109.54812 * 302.98351 * 15 11 10 28 28 H 1.09001 * 109.52606 * 297.07957 * 16 15 11 29 29 H 1.09007 * 109.52515 * 176.88525 * 16 15 11 30 30 H 1.08996 * 109.48657 * 182.40855 * 17 16 15 31 31 H 1.09002 * 109.48315 * 62.36673 * 17 16 15 32 32 H 1.09005 * 109.48139 * 58.82331 * 19 18 17 33 33 H 1.09001 * 109.48271 * 178.85867 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4800 -4.9872 0.0033 12 6 0.6152 -5.0703 1.2346 13 8 0.7801 -5.9654 2.0293 14 8 -0.3382 -4.1500 1.4487 15 6 2.4743 -6.1523 -0.0036 16 6 1.6984 -7.4707 -0.0817 17 6 0.8098 -7.4579 -1.3283 18 8 -0.0693 -6.3326 -1.2733 19 6 0.5998 -5.0702 -1.2466 20 1 -0.4850 0.8400 0.0004 21 1 0.6239 -2.5575 -0.8880 22 1 0.6245 -2.5563 0.8920 23 1 2.8718 -3.6037 0.8927 24 1 2.8717 -3.6052 -0.8873 25 1 -0.8673 -4.2448 2.2524 26 1 3.0668 -6.1315 0.9110 27 1 3.1325 -6.0649 -0.8680 28 1 1.0773 -7.5811 0.8072 29 1 2.3997 -8.3031 -0.1429 30 1 0.2233 -8.3758 -1.3662 31 1 1.4341 -7.3882 -2.2191 32 1 1.2215 -4.9693 -2.1363 33 1 -0.1380 -4.2681 -1.2256 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691824298.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:23 Heat of formation + Delta-G solvation = -155.559921 kcal Electronic energy + Delta-G solvation = -16871.858512 eV Core-core repulsion = 14089.991964 eV Total energy + Delta-G solvation = -2781.866548 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.67879 -38.30810 -35.67941 -35.00902 -32.94763 -31.94713 -29.02444 -25.40010 -24.95227 -23.80321 -22.29361 -20.33472 -19.29714 -17.55177 -16.63361 -16.27602 -15.70119 -15.22297 -15.04601 -14.49162 -14.09227 -13.66636 -13.30400 -12.75063 -12.43943 -12.39550 -12.11577 -11.78773 -11.33963 -10.99982 -10.94027 -10.87741 -10.71028 -10.44526 -10.40496 -9.81057 -9.67271 -9.31319 -9.17380 -8.98440 -8.30562 -5.98642 -4.00761 2.73214 3.30541 3.38543 3.41981 3.54593 4.10523 4.45613 4.80624 4.98240 5.07819 5.10201 5.36645 5.42416 5.57661 5.65382 5.79977 5.84275 5.93634 5.98732 6.15823 6.33923 6.37563 6.48302 6.56749 6.98102 7.06759 7.34570 7.70430 7.87899 8.05371 8.41869 8.47507 9.07148 9.62301 11.11917 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.042314 B = 0.007281 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.553356 B = 3844.771233 C = 3929.959002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.009 3.991 10 C -0.102 4.102 11 C -0.085 4.085 12 C 0.505 3.495 13 O -0.534 6.534 14 O -0.485 6.485 15 C -0.101 4.101 16 C -0.167 4.167 17 C 0.057 3.943 18 O -0.384 6.384 19 C 0.072 3.928 20 H 0.259 0.741 21 H 0.020 0.980 22 H 0.048 0.952 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.396 0.604 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -11.958 -1.424 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.028 4.028 10 C -0.139 4.139 11 C -0.086 4.086 12 C 0.349 3.651 13 O -0.425 6.425 14 O -0.294 6.294 15 C -0.139 4.139 16 C -0.205 4.205 17 C -0.020 4.020 18 O -0.303 6.303 19 C -0.005 4.005 20 H 0.069 0.931 21 H 0.038 0.962 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.254 0.746 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.759 -12.047 -1.576 12.277 hybrid contribution 0.509 0.954 0.579 1.226 sum 2.268 -11.094 -0.997 11.367 Atomic orbital electron populations 1.69979 1.05894 1.26339 1.50686 1.24985 0.94826 0.99060 0.95429 0.86601 0.80122 0.84084 0.77565 1.19851 1.21052 1.21074 1.21270 0.92938 0.91154 1.50733 0.92846 1.19471 0.93803 0.90389 0.99124 1.21760 0.99030 0.91417 1.01714 1.21367 0.95266 0.99884 0.92132 1.23113 0.78049 0.77319 0.86607 1.90566 1.69376 1.35091 1.47448 1.84903 1.45851 1.51173 1.47459 1.21535 0.96762 0.92595 1.02986 1.22407 0.99880 0.97707 1.00487 1.22607 0.93100 0.89594 0.96673 1.87967 1.33476 1.14161 1.94699 1.22840 0.97135 0.85973 0.94510 0.93126 0.96175 0.93408 0.92476 0.91545 0.74641 0.90781 0.90776 0.89108 0.91220 0.89341 0.93379 0.91795 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.01 0.21 4.11 -27.88 -0.11 0.10 16 10 C -0.10 -2.00 4.21 -26.73 -0.11 -2.11 16 11 C -0.09 -1.47 0.52 -155.52 -0.08 -1.55 16 12 C 0.51 9.43 6.29 36.00 0.23 9.66 16 13 O -0.53 -10.42 14.61 -18.75 -0.27 -10.69 16 14 O -0.48 -8.87 10.24 -39.25 -0.40 -9.27 16 15 C -0.10 -1.48 4.45 -26.55 -0.12 -1.60 16 16 C -0.17 -2.26 5.81 -26.59 -0.15 -2.41 16 17 C 0.06 0.74 6.84 37.21 0.25 1.00 16 18 O -0.38 -6.30 10.45 -35.23 -0.37 -6.67 16 19 C 0.07 1.20 5.06 37.21 0.19 1.39 16 20 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 21 H 0.02 0.51 6.49 -51.93 -0.34 0.18 16 22 H 0.05 1.24 5.35 -51.93 -0.28 0.97 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.40 5.39 9.10 45.56 0.41 5.81 16 26 H 0.07 1.11 8.02 -51.93 -0.42 0.70 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.09 1.44 5.83 -51.93 -0.30 1.14 16 29 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.12 2.20 6.50 -51.93 -0.34 1.86 16 LS Contribution 265.64 15.07 4.00 4.00 Total: -1.00 -31.64 265.64 -5.41 -37.05 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -3.76 Total: 3.33 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -0.32 Total: -8.70 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.74 Total: -25.39 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -1.04 Total: -26.63 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.64 -5.41 -37.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691824298.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.515 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds