Wall clock time and date at job start Mon Mar 30 2020 03:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 115.56755 * 2 1 4 4 C 1.53009 * 117.50043 * 214.30909 * 2 1 3 5 5 C 1.53006 * 117.49652 * 145.68746 * 2 1 3 6 6 C 1.53000 * 117.49665 * 214.97756 * 5 2 1 7 7 C 1.52996 * 109.46954 * 65.28365 * 6 5 2 8 8 O 1.42907 * 109.47100 * 176.26297 * 7 6 5 9 9 C 1.42901 * 113.99827 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47001 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99856 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00341 * 180.27472 * 10 9 8 13 13 N 1.31515 * 120.00129 * 179.72670 * 12 10 9 14 14 Si 1.86805 * 119.99725 * 359.72054 * 12 10 9 15 15 H 1.48499 * 109.46946 * 90.00085 * 14 12 10 16 16 H 1.48498 * 109.47100 * 210.00222 * 14 12 10 17 17 H 1.48502 * 109.46893 * 330.00460 * 14 12 10 18 18 C 1.50691 * 117.50147 * 359.97438 * 5 2 1 19 19 O 1.20831 * 120.00026 * 327.55012 * 18 5 2 20 20 O 1.34228 * 120.00435 * 147.54790 * 18 5 2 21 21 H 1.08993 * 109.47255 * 274.30870 * 1 2 3 22 22 H 1.09001 * 109.47008 * 34.31419 * 1 2 3 23 23 H 1.09004 * 109.46986 * 154.30928 * 1 2 3 24 24 H 1.08998 * 117.49802 * 145.02055 * 4 2 1 25 25 H 1.09003 * 117.49521 * 0.02562 * 4 2 1 26 26 H 1.08999 * 109.47357 * 305.28397 * 6 5 2 27 27 H 1.09003 * 109.46856 * 185.28296 * 6 5 2 28 28 H 1.09005 * 109.47531 * 56.26434 * 7 6 5 29 29 H 1.09002 * 109.47442 * 296.25622 * 7 6 5 30 30 H 1.08996 * 109.47519 * 59.99770 * 9 8 7 31 31 H 1.08998 * 109.46835 * 299.99239 * 9 8 7 32 32 H 0.96997 * 119.99540 * 179.97438 * 13 12 10 33 33 H 0.96697 * 116.99907 * 180.02562 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1211 -0.7650 5 6 2.2364 -1.1210 0.7651 6 6 3.5490 -0.7760 1.4715 7 6 3.2755 0.2268 2.5942 8 8 4.4859 0.4828 3.3095 9 6 4.3397 1.4114 4.3858 10 6 5.6701 1.6048 5.0666 11 1 6.5403 1.0717 4.7129 12 6 5.7753 2.4577 6.1448 13 7 6.9353 2.6225 6.7422 14 14 4.2702 3.3794 6.7569 15 1 3.5753 2.5646 7.7857 16 1 4.6902 4.6739 7.3512 17 1 3.3486 3.6324 5.6202 18 6 1.3720 -2.1402 1.4614 19 8 0.3024 -1.8138 1.9189 20 8 1.7902 -3.4108 1.5734 21 1 -0.3633 0.0772 1.0247 22 1 -0.3633 0.8488 -0.5793 23 1 -0.3633 -0.9261 -0.4455 24 1 3.1716 -0.8752 -1.2683 25 1 1.6112 -1.8583 -1.2686 26 1 4.2434 -0.3381 0.7544 27 1 3.9845 -1.6824 1.8920 28 1 2.5309 -0.1847 3.2757 29 1 2.9022 1.1576 2.1671 30 1 3.6173 1.0240 5.1043 31 1 3.9882 2.3667 3.9962 32 1 7.0093 3.2228 7.5005 33 1 1.2012 -4.0284 2.0279 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703320768.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:56 Heat of formation + Delta-G solvation = -123.402932 kcal Electronic energy + Delta-G solvation = -15797.103221 eV Core-core repulsion = 13016.631105 eV Total energy + Delta-G solvation = -2780.472116 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.80230 -38.08204 -36.76498 -36.07418 -32.74775 -31.30564 -28.62859 -27.45354 -25.09132 -22.54779 -21.88418 -21.42718 -19.80157 -17.95860 -16.87300 -16.27039 -16.17475 -15.29621 -15.16716 -14.68366 -14.45345 -13.94765 -13.35825 -13.11608 -12.73174 -12.46809 -12.44115 -12.34437 -11.71979 -11.60499 -11.25859 -11.08671 -10.99267 -10.66444 -10.59320 -10.02263 -9.91464 -9.87128 -9.20195 -8.87317 -8.49306 -6.12584 -4.11874 2.05286 2.81311 3.24914 3.31632 3.33834 3.36042 4.19656 4.35129 4.38364 4.60689 4.96921 5.09403 5.12899 5.18840 5.39156 5.48271 5.51588 5.67132 5.70300 5.78599 5.85845 5.92111 6.15410 6.20366 6.25166 6.43158 6.60299 6.98461 7.58033 7.80380 7.98713 8.64338 8.98232 9.46613 11.00366 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.036800 B = 0.005489 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.692967 B = 5099.635049 C = 5198.838351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.117 4.117 3 H 0.122 0.878 4 C -0.146 4.146 5 C -0.131 4.131 6 C -0.075 4.075 7 C 0.061 3.939 8 O -0.382 6.382 9 C 0.170 3.830 10 C -0.520 4.520 11 H 0.083 0.917 12 C 0.073 3.927 13 N -0.895 5.895 14 Si 0.875 3.125 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.266 1.266 18 C 0.519 3.481 19 O -0.507 6.507 20 O -0.510 6.510 21 H 0.079 0.921 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.111 0.889 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.042 0.958 30 H -0.002 1.002 31 H 0.004 0.996 32 H 0.267 0.733 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 -8.114 -14.453 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.135 4.135 3 H 0.140 0.860 4 C -0.183 4.183 5 C -0.133 4.133 6 C -0.112 4.112 7 C -0.017 4.017 8 O -0.301 6.301 9 C 0.094 3.906 10 C -0.558 4.558 11 H 0.101 0.899 12 C -0.129 4.129 13 N -0.533 5.533 14 Si 0.702 3.298 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.191 1.191 18 C 0.361 3.639 19 O -0.394 6.394 20 O -0.322 6.322 21 H 0.097 0.903 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.130 0.870 25 H 0.118 0.882 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.016 0.984 31 H 0.022 0.978 32 H 0.077 0.923 33 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -12.449 -7.733 -14.412 20.555 hybrid contribution -1.344 0.176 0.925 1.641 sum -13.793 -7.557 -13.488 20.719 Atomic orbital electron populations 1.21490 0.91861 1.01412 1.03519 1.22612 0.96167 0.94575 1.00104 0.86022 1.23368 1.03520 1.01165 0.90284 1.20970 0.98759 0.98535 0.94997 1.20984 0.92190 1.00621 0.97398 1.22256 0.89018 0.97108 0.93325 1.87877 1.29638 1.65301 1.47270 1.20610 0.98335 0.87098 0.84523 1.20894 0.94467 1.26757 1.13712 0.89902 1.24759 0.96092 0.96197 0.95845 1.69874 1.23744 1.37466 1.22240 0.86861 0.83474 0.79861 0.79651 1.19895 1.20687 1.19060 1.22250 0.84211 0.81389 0.76076 1.90696 1.23292 1.80188 1.45227 1.84547 1.53291 1.20916 1.73420 0.90252 0.92067 0.93018 0.87043 0.88188 0.89517 0.89683 0.94601 0.93985 0.98381 0.97824 0.92330 0.73259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 8.60 37.16 0.32 -1.00 16 2 C -0.12 -1.25 5.75 -90.61 -0.52 -1.77 16 3 H 0.12 1.24 7.99 -51.93 -0.41 0.83 16 4 C -0.15 -1.35 9.53 -26.72 -0.25 -1.61 16 5 C -0.13 -1.60 1.98 -155.66 -0.31 -1.91 16 6 C -0.07 -1.07 5.50 -26.73 -0.15 -1.22 16 7 C 0.06 1.10 5.78 37.16 0.21 1.32 16 8 O -0.38 -9.07 10.33 -35.23 -0.36 -9.44 16 9 C 0.17 4.42 4.76 36.01 0.17 4.59 16 10 C -0.52 -15.71 9.99 -34.44 -0.34 -16.05 16 11 H 0.08 2.72 8.06 -52.48 -0.42 2.29 16 12 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 13 N -0.89 -27.80 13.96 55.43 0.77 -27.02 16 14 Si 0.88 21.70 27.46 -169.99 -4.67 17.03 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.34 6.55 56.52 0.37 -5.97 16 18 C 0.52 6.73 7.32 36.00 0.26 7.00 16 19 O -0.51 -7.63 15.02 -18.75 -0.28 -7.92 16 20 O -0.51 -5.40 13.42 -39.25 -0.53 -5.93 16 21 H 0.08 0.99 6.79 -51.93 -0.35 0.64 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.52 7.88 -51.93 -0.41 0.11 16 24 H 0.11 0.87 8.08 -51.93 -0.42 0.46 16 25 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 26 H 0.09 1.14 7.94 -51.93 -0.41 0.73 16 27 H 0.08 1.26 8.12 -51.93 -0.42 0.84 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.72 7.79 -51.93 -0.40 0.31 16 30 H 0.00 -0.04 7.56 -51.93 -0.39 -0.43 16 31 H 0.00 0.10 7.21 -51.93 -0.37 -0.27 16 32 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.41 2.49 9.10 45.56 0.41 2.90 16 LS Contribution 284.80 15.07 4.29 4.29 Total: -1.00 -34.14 284.80 -5.52 -39.66 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.04 Total: -2.10 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -0.70 Total: -8.57 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: 0.77 Total: -27.02 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -1.17 Total: -23.28 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -34.14 -5.52 -39.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703320768.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.746 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds