Wall clock time and date at job start Mon Mar 30 2020 03:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 115.56755 * 2 1 4 4 C 1.53009 * 117.50043 * 214.30909 * 2 1 3 5 5 C 1.53006 * 117.49652 * 145.68746 * 2 1 3 6 6 C 1.53000 * 117.49665 * 214.97756 * 5 2 1 7 7 C 1.52996 * 109.46954 * 65.28365 * 6 5 2 8 8 O 1.42907 * 109.47100 * 176.26297 * 7 6 5 9 9 C 1.42901 * 113.99827 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47001 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99856 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00341 * 180.27472 * 10 9 8 13 13 N 1.31515 * 120.00129 * 179.72670 * 12 10 9 14 14 Si 1.86805 * 119.99725 * 359.72054 * 12 10 9 15 15 H 1.48499 * 109.46946 * 90.00085 * 14 12 10 16 16 H 1.48498 * 109.47100 * 210.00222 * 14 12 10 17 17 H 1.48502 * 109.46893 * 330.00460 * 14 12 10 18 18 C 1.50691 * 117.50147 * 359.97438 * 5 2 1 19 19 O 1.20831 * 120.00026 * 327.55012 * 18 5 2 20 20 O 1.34228 * 120.00435 * 147.54790 * 18 5 2 21 21 H 1.08993 * 109.47255 * 274.30870 * 1 2 3 22 22 H 1.09001 * 109.47008 * 34.31419 * 1 2 3 23 23 H 1.09004 * 109.46986 * 154.30928 * 1 2 3 24 24 H 1.08998 * 117.49802 * 145.02055 * 4 2 1 25 25 H 1.09003 * 117.49521 * 0.02562 * 4 2 1 26 26 H 1.08999 * 109.47357 * 305.28397 * 6 5 2 27 27 H 1.09003 * 109.46856 * 185.28296 * 6 5 2 28 28 H 1.09005 * 109.47531 * 56.26434 * 7 6 5 29 29 H 1.09002 * 109.47442 * 296.25622 * 7 6 5 30 30 H 1.08996 * 109.47519 * 59.99770 * 9 8 7 31 31 H 1.08998 * 109.46835 * 299.99239 * 9 8 7 32 32 H 0.96997 * 119.99540 * 179.97438 * 13 12 10 33 33 H 0.96697 * 116.99907 * 180.02562 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1211 -0.7650 5 6 2.2364 -1.1210 0.7651 6 6 3.5490 -0.7760 1.4715 7 6 3.2755 0.2268 2.5942 8 8 4.4859 0.4828 3.3095 9 6 4.3397 1.4114 4.3858 10 6 5.6701 1.6048 5.0666 11 1 6.5403 1.0717 4.7129 12 6 5.7753 2.4577 6.1448 13 7 6.9353 2.6225 6.7422 14 14 4.2702 3.3794 6.7569 15 1 3.5753 2.5646 7.7857 16 1 4.6902 4.6739 7.3512 17 1 3.3486 3.6324 5.6202 18 6 1.3720 -2.1402 1.4614 19 8 0.3024 -1.8138 1.9189 20 8 1.7902 -3.4108 1.5734 21 1 -0.3633 0.0772 1.0247 22 1 -0.3633 0.8488 -0.5793 23 1 -0.3633 -0.9261 -0.4455 24 1 3.1716 -0.8752 -1.2683 25 1 1.6112 -1.8583 -1.2686 26 1 4.2434 -0.3381 0.7544 27 1 3.9845 -1.6824 1.8920 28 1 2.5309 -0.1847 3.2757 29 1 2.9022 1.1576 2.1671 30 1 3.6173 1.0240 5.1043 31 1 3.9882 2.3667 3.9962 32 1 7.0093 3.2228 7.5005 33 1 1.2012 -4.0284 2.0279 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703320768.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:55 Heat of formation + Delta-G solvation = -147.643775 kcal Electronic energy + Delta-G solvation = -15798.154383 eV Core-core repulsion = 13016.631105 eV Total energy + Delta-G solvation = -2781.523278 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.74518 -39.18837 -38.30524 -37.04501 -34.94695 -32.62051 -30.20293 -28.88564 -26.07385 -24.11471 -23.73081 -22.26087 -20.71055 -19.12319 -18.88718 -17.65394 -17.23910 -16.69307 -16.61943 -16.39210 -15.64874 -15.01876 -14.91936 -14.46711 -14.25704 -13.97874 -13.42588 -13.32085 -12.93377 -12.92405 -12.65062 -12.57916 -12.33236 -12.26803 -11.86129 -11.62423 -11.41166 -10.98091 -10.96216 -10.81655 -10.44285 -8.40479 -6.48842 1.08556 1.31277 1.33522 1.44696 1.99527 2.26471 2.45984 2.91829 2.96953 3.46642 3.71310 3.91395 4.08686 4.19555 4.34025 4.38324 4.44877 4.54654 4.63326 4.80946 4.87303 4.92502 4.96130 5.02216 5.08163 5.14138 5.34862 5.38906 5.59896 5.89227 6.54575 6.66654 6.96166 7.15536 8.76466 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.036800 B = 0.005489 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.692967 B = 5099.635049 C = 5198.838351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 H 0.127 0.873 4 C -0.119 4.119 5 C -0.155 4.155 6 C -0.065 4.065 7 C 0.055 3.945 8 O -0.405 6.405 9 C 0.179 3.821 10 C -0.548 4.548 11 H 0.034 0.966 12 C 0.016 3.984 13 N -0.939 5.939 14 Si 0.952 3.048 15 H -0.261 1.261 16 H -0.269 1.269 17 H -0.247 1.247 18 C 0.518 3.482 19 O -0.534 6.534 20 O -0.509 6.509 21 H 0.054 0.946 22 H 0.078 0.922 23 H 0.053 0.947 24 H 0.130 0.870 25 H 0.114 0.886 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.029 0.971 29 H 0.057 0.943 30 H 0.005 0.995 31 H 0.015 0.985 32 H 0.274 0.726 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.538 -7.686 -15.602 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.138 4.138 3 H 0.145 0.855 4 C -0.155 4.155 5 C -0.156 4.156 6 C -0.102 4.102 7 C -0.022 4.022 8 O -0.325 6.325 9 C 0.103 3.897 10 C -0.586 4.586 11 H 0.052 0.948 12 C -0.182 4.182 13 N -0.578 5.578 14 Si 0.773 3.227 15 H -0.186 1.186 16 H -0.194 1.194 17 H -0.170 1.170 18 C 0.361 3.639 19 O -0.424 6.424 20 O -0.322 6.322 21 H 0.073 0.927 22 H 0.097 0.903 23 H 0.072 0.928 24 H 0.149 0.851 25 H 0.132 0.868 26 H 0.118 0.882 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.023 0.977 31 H 0.033 0.967 32 H 0.083 0.917 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -14.297 -7.343 -15.580 22.385 hybrid contribution -0.690 -0.064 1.242 1.423 sum -14.987 -7.408 -14.338 22.024 Atomic orbital electron populations 1.21440 0.91868 1.02321 1.02297 1.22728 0.96235 0.94897 0.99985 0.85466 1.23517 1.04123 1.00016 0.87866 1.20924 0.97987 0.99830 0.96846 1.20871 0.93842 0.99061 0.96429 1.22564 0.86906 0.98920 0.93819 1.87831 1.32788 1.64806 1.47061 1.20337 0.95870 0.88191 0.85270 1.21149 0.95053 1.27269 1.15142 0.94797 1.25795 1.00000 0.96863 0.95541 1.70018 1.26541 1.38326 1.22919 0.85663 0.78838 0.78528 0.79692 1.18612 1.19350 1.17036 1.22439 0.83874 0.82013 0.75531 1.90688 1.24554 1.80781 1.46390 1.84510 1.53748 1.20556 1.73386 0.92664 0.90292 0.92833 0.85146 0.86776 0.88152 0.90673 0.95265 0.92505 0.97681 0.96685 0.91660 0.71157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.60 71.98 0.62 -1.72 16 2 C -0.12 -2.28 5.75 -10.79 -0.06 -2.34 16 3 H 0.13 2.25 7.99 -2.39 -0.02 2.24 16 4 C -0.12 -1.80 9.53 30.60 0.29 -1.51 16 5 C -0.15 -3.47 1.98 -52.93 -0.10 -3.58 16 6 C -0.06 -1.77 5.50 30.59 0.17 -1.60 16 7 C 0.05 1.94 5.78 71.98 0.42 2.36 16 8 O -0.41 -19.32 10.33 -148.98 -1.54 -20.86 16 9 C 0.18 9.27 4.76 71.24 0.34 9.61 16 10 C -0.55 -33.95 9.99 25.60 0.26 -33.69 16 11 H 0.03 2.34 8.06 -2.91 -0.02 2.32 16 12 C 0.02 0.98 5.47 84.65 0.46 1.45 16 13 N -0.94 -59.35 13.96 21.45 0.30 -59.06 16 14 Si 0.95 43.97 27.46 68.60 1.88 45.86 16 15 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.25 -10.59 6.55 99.48 0.65 -9.94 16 18 C 0.52 12.80 7.32 71.23 0.52 13.32 16 19 O -0.53 -15.74 15.02 21.95 0.33 -15.42 16 20 O -0.51 -10.01 13.42 -51.40 -0.69 -10.70 16 21 H 0.05 1.34 6.79 -2.39 -0.02 1.32 16 22 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.05 0.98 7.88 -2.39 -0.02 0.96 16 24 H 0.13 1.52 8.08 -2.39 -0.02 1.50 16 25 H 0.11 1.45 8.05 -2.39 -0.02 1.43 16 26 H 0.10 2.44 7.94 -2.39 -0.02 2.43 16 27 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 28 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.06 1.84 7.79 -2.39 -0.02 1.82 16 30 H 0.01 0.27 7.56 -2.39 -0.02 0.26 16 31 H 0.02 0.76 7.21 -2.39 -0.02 0.74 16 32 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 33 H 0.43 4.60 9.10 -74.06 -0.67 3.92 16 Total: -1.00 -74.93 284.80 3.56 -71.36 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: 0.37 Total: 6.53 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 2.91 Total: -17.72 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.30 Total: -59.06 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -1.90 Total: -46.98 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.86 kcal Total: -74.93 3.56 -71.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703320768.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.283 kcal (2) G-P(sol) polarization free energy of solvation -74.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds