Wall clock time and date at job start Mon Mar 30 2020 03:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47313 * 2 1 4 4 C 1.50699 * 109.47203 * 120.00650 * 2 1 3 5 5 H 1.08002 * 120.00516 * 119.99366 * 4 2 1 6 6 C 1.37884 * 119.99783 * 299.99666 * 4 2 1 7 7 N 1.31514 * 119.99707 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99956 * 180.27458 * 6 4 2 9 9 H 1.48497 * 109.47172 * 179.72730 * 8 6 4 10 10 H 1.48506 * 109.47132 * 299.72429 * 8 6 4 11 11 H 1.48501 * 109.47173 * 59.72550 * 8 6 4 12 12 C 1.53004 * 109.46866 * 240.00201 * 2 1 3 13 13 C 1.50700 * 109.52546 * 300.00156 * 12 2 1 14 14 O 1.20829 * 119.99681 * 0.02562 * 13 12 2 15 15 O 1.34225 * 119.99945 * 180.02562 * 13 12 2 16 16 C 1.53176 * 109.52306 * 60.13044 * 12 2 1 17 17 C 1.53175 * 109.03921 * 176.88582 * 16 12 2 18 18 C 1.53090 * 109.16176 * 303.01654 * 17 16 12 19 19 O 1.42904 * 109.41693 * 57.60835 * 18 17 16 20 20 C 1.42910 * 114.15255 * 298.87522 * 19 18 17 21 21 H 1.08994 * 109.46844 * 299.99958 * 1 2 3 22 22 H 1.08998 * 109.46846 * 59.99273 * 1 2 3 23 23 H 1.08997 * 109.47361 * 179.97438 * 1 2 3 24 24 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 25 25 H 0.96707 * 116.99752 * 180.02562 * 15 13 12 26 26 H 1.09004 * 109.54225 * 296.74912 * 16 12 2 27 27 H 1.08993 * 109.54368 * 57.01290 * 16 12 2 28 28 H 1.09004 * 109.52393 * 62.92277 * 17 16 12 29 29 H 1.08995 * 109.52650 * 183.04949 * 17 16 12 30 30 H 1.08995 * 109.48373 * 177.59029 * 18 17 16 31 31 H 1.08994 * 109.48361 * 297.61811 * 18 17 16 32 32 H 1.08998 * 109.43130 * 301.10815 * 20 19 18 33 33 H 1.09005 * 109.53991 * 181.07195 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3283 -1.1157 4.0078 9 1 1.8377 -0.4127 5.2203 10 1 1.8338 -2.5160 4.0136 11 1 3.8133 -1.1152 4.0020 12 6 2.0400 -0.7212 -1.2493 13 6 1.5382 -2.1423 -1.2506 14 8 0.8431 -2.5383 -0.3451 15 8 1.8635 -2.9679 -2.2576 16 6 1.5327 0.0019 -2.5007 17 6 2.1126 -0.6821 -3.7426 18 6 3.6406 -0.6802 -3.6499 19 8 4.0445 -1.3406 -2.4487 20 6 3.5709 -0.7192 -1.2521 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7082 1.1606 3.4845 25 1 1.5178 -3.8701 -2.2148 26 1 0.4442 -0.0456 -2.5332 27 1 1.8529 1.0434 -2.4750 28 1 1.7520 -1.7094 -3.7945 29 1 1.8003 -0.1410 -4.6358 30 1 4.0577 -1.2035 -4.5103 31 1 4.0029 0.3477 -3.6391 32 1 3.9332 0.3079 -1.2092 33 1 3.9367 -1.2703 -0.3857 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709471261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:27 Heat of formation + Delta-G solvation = -141.049944 kcal Electronic energy + Delta-G solvation = -17474.451846 eV Core-core repulsion = 14693.214498 eV Total energy + Delta-G solvation = -2781.237348 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.35181 -38.00544 -35.78784 -34.49212 -32.71528 -31.29238 -28.52983 -25.73221 -24.19761 -23.76602 -22.23444 -20.43523 -18.72565 -17.28064 -16.40628 -15.80153 -15.54941 -15.19811 -14.52825 -14.49603 -13.62730 -13.28549 -13.06100 -12.53405 -12.23762 -12.15383 -11.61748 -11.37390 -11.07317 -10.93920 -10.66884 -10.48398 -10.43623 -10.24770 -10.06735 -9.77230 -9.57598 -9.15538 -8.85728 -8.59016 -8.24287 -5.92283 -3.95284 3.16406 3.37475 3.41302 3.46127 3.84888 4.36886 4.50549 5.21729 5.29916 5.33359 5.39622 5.49983 5.63457 5.79558 5.98395 6.12426 6.12916 6.21825 6.34477 6.53106 6.67284 6.78185 6.97508 7.14160 7.27989 7.36631 7.67623 7.75133 8.00949 8.15305 8.45281 8.86372 8.99843 9.66670 11.14159 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.035421 B = 0.010010 C = 0.009828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.302560 B = 2796.427690 C = 2848.186190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 H 0.038 0.962 4 C -0.494 4.494 5 H 0.052 0.948 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.889 3.111 9 H -0.289 1.289 10 H -0.278 1.278 11 H -0.278 1.278 12 C -0.068 4.068 13 C 0.485 3.515 14 O -0.480 6.480 15 O -0.515 6.515 16 C -0.113 4.113 17 C -0.166 4.166 18 C 0.067 3.933 19 O -0.379 6.379 20 C 0.079 3.921 21 H 0.083 0.917 22 H 0.002 0.998 23 H 0.051 0.949 24 H 0.259 0.741 25 H 0.386 0.614 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 -2.174 -11.356 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.047 3.953 3 H 0.056 0.944 4 C -0.532 4.532 5 H 0.070 0.930 6 C -0.138 4.138 7 N -0.533 5.533 8 Si 0.717 3.283 9 H -0.214 1.214 10 H -0.204 1.204 11 H -0.204 1.204 12 C -0.069 4.069 13 C 0.325 3.675 14 O -0.364 6.364 15 O -0.326 6.326 16 C -0.150 4.150 17 C -0.203 4.203 18 C -0.010 4.010 19 O -0.298 6.298 20 C 0.003 3.997 21 H 0.101 0.899 22 H 0.021 0.979 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.243 0.757 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.725 -1.916 -10.954 11.449 hybrid contribution -0.238 -0.767 0.983 1.269 sum 2.487 -2.683 -9.971 10.621 Atomic orbital electron populations 1.22076 0.97994 1.01045 0.99723 1.18621 0.93514 0.94834 0.88343 0.94401 1.20942 1.30573 1.11426 0.90242 0.92992 1.24851 0.95212 0.94978 0.98786 1.69870 1.37067 1.23099 1.23248 0.86700 0.79036 0.79979 0.82552 1.21426 1.20360 1.20382 1.21463 0.97297 0.88384 0.99769 1.23384 0.77454 0.88280 0.78333 1.90688 1.34416 1.76229 1.35083 1.84760 1.72935 1.26065 1.48887 1.21698 1.01129 0.99369 0.92825 1.22433 0.96993 1.03073 0.97797 1.22413 0.94040 0.96534 0.88056 1.87935 1.74072 1.54053 1.13721 1.22648 0.91152 0.98764 0.87135 0.89880 0.97875 0.93014 0.93119 0.75750 0.91161 0.90932 0.89152 0.91862 0.89813 0.94050 0.92273 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 8.33 37.16 0.31 -3.43 16 2 C 0.07 1.59 1.65 -91.77 -0.15 1.44 16 3 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.49 -13.42 6.32 -34.44 -0.22 -13.64 16 5 H 0.05 1.43 6.27 -52.49 -0.33 1.10 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.69 11.32 55.43 0.63 -25.07 16 8 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C -0.07 -1.36 0.29 -155.52 -0.05 -1.41 16 13 C 0.48 9.97 6.14 36.01 0.22 10.19 16 14 O -0.48 -11.62 13.15 -18.75 -0.25 -11.86 16 15 O -0.52 -8.47 9.47 -44.89 -0.42 -8.90 16 16 C -0.11 -1.89 4.35 -26.55 -0.12 -2.01 16 17 C -0.17 -2.33 5.68 -26.59 -0.15 -2.48 16 18 C 0.07 0.93 6.84 37.20 0.25 1.19 16 19 O -0.38 -6.63 9.66 -51.08 -0.49 -7.12 16 20 C 0.08 1.51 5.23 37.21 0.19 1.70 16 21 H 0.08 2.28 6.07 -51.93 -0.32 1.96 16 22 H 0.00 0.05 6.51 -51.93 -0.34 -0.29 16 23 H 0.05 1.33 5.52 -51.93 -0.29 1.05 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.39 4.72 9.10 45.56 0.41 5.14 16 26 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.09 1.34 5.55 -51.93 -0.29 1.05 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.11 2.18 6.72 -51.93 -0.35 1.83 16 LS Contribution 254.11 15.07 3.83 3.83 Total: -1.00 -31.02 254.11 -5.03 -36.06 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -3.51 Total: 2.94 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 0.20 Total: -6.80 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.63 Total: -25.07 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -1.16 Total: -27.89 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.02 -5.03 -36.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709471261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.994 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds