Wall clock time and date at job start Mon Mar 30 2020 03:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47313 * 2 1 4 4 C 1.50699 * 109.47203 * 120.00650 * 2 1 3 5 5 H 1.08002 * 120.00516 * 119.99366 * 4 2 1 6 6 C 1.37884 * 119.99783 * 299.99666 * 4 2 1 7 7 N 1.31514 * 119.99707 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99956 * 180.27458 * 6 4 2 9 9 H 1.48497 * 109.47172 * 179.72730 * 8 6 4 10 10 H 1.48506 * 109.47132 * 299.72429 * 8 6 4 11 11 H 1.48501 * 109.47173 * 59.72550 * 8 6 4 12 12 C 1.53004 * 109.46866 * 240.00201 * 2 1 3 13 13 C 1.50700 * 109.52546 * 300.00156 * 12 2 1 14 14 O 1.20829 * 119.99681 * 0.02562 * 13 12 2 15 15 O 1.34225 * 119.99945 * 180.02562 * 13 12 2 16 16 C 1.53176 * 109.52306 * 60.13044 * 12 2 1 17 17 C 1.53175 * 109.03921 * 176.88582 * 16 12 2 18 18 C 1.53090 * 109.16176 * 303.01654 * 17 16 12 19 19 O 1.42904 * 109.41693 * 57.60835 * 18 17 16 20 20 C 1.42910 * 114.15255 * 298.87522 * 19 18 17 21 21 H 1.08994 * 109.46844 * 299.99958 * 1 2 3 22 22 H 1.08998 * 109.46846 * 59.99273 * 1 2 3 23 23 H 1.08997 * 109.47361 * 179.97438 * 1 2 3 24 24 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 25 25 H 0.96707 * 116.99752 * 180.02562 * 15 13 12 26 26 H 1.09004 * 109.54225 * 296.74912 * 16 12 2 27 27 H 1.08993 * 109.54368 * 57.01290 * 16 12 2 28 28 H 1.09004 * 109.52393 * 62.92277 * 17 16 12 29 29 H 1.08995 * 109.52650 * 183.04949 * 17 16 12 30 30 H 1.08995 * 109.48373 * 177.59029 * 18 17 16 31 31 H 1.08994 * 109.48361 * 297.61811 * 18 17 16 32 32 H 1.08998 * 109.43130 * 301.10815 * 20 19 18 33 33 H 1.09005 * 109.53991 * 181.07195 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3283 -1.1157 4.0078 9 1 1.8377 -0.4127 5.2203 10 1 1.8338 -2.5160 4.0136 11 1 3.8133 -1.1152 4.0020 12 6 2.0400 -0.7212 -1.2493 13 6 1.5382 -2.1423 -1.2506 14 8 0.8431 -2.5383 -0.3451 15 8 1.8635 -2.9679 -2.2576 16 6 1.5327 0.0019 -2.5007 17 6 2.1126 -0.6821 -3.7426 18 6 3.6406 -0.6802 -3.6499 19 8 4.0445 -1.3406 -2.4487 20 6 3.5709 -0.7192 -1.2521 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7082 1.1606 3.4845 25 1 1.5178 -3.8701 -2.2148 26 1 0.4442 -0.0456 -2.5332 27 1 1.8529 1.0434 -2.4750 28 1 1.7520 -1.7094 -3.7945 29 1 1.8003 -0.1410 -4.6358 30 1 4.0577 -1.2035 -4.5103 31 1 4.0029 0.3477 -3.6391 32 1 3.9332 0.3079 -1.2092 33 1 3.9367 -1.2703 -0.3857 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709471261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:27 Heat of formation + Delta-G solvation = -162.083638 kcal Electronic energy + Delta-G solvation = -17475.363935 eV Core-core repulsion = 14693.214498 eV Total energy + Delta-G solvation = -2782.149437 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.89566 -39.43910 -37.38102 -36.16324 -34.41549 -32.83894 -30.29207 -27.57309 -25.71882 -25.32277 -23.80340 -21.99096 -20.31233 -18.83291 -18.36376 -17.24500 -17.00624 -16.66537 -16.43365 -15.97705 -15.07156 -14.89255 -14.59347 -14.19454 -13.85751 -13.63935 -13.27635 -13.06369 -12.90825 -12.63008 -12.47108 -12.24925 -12.06707 -11.85999 -11.78238 -11.41899 -11.07976 -10.94257 -10.57600 -10.33873 -10.18367 -8.04529 -6.11803 1.38648 1.41462 1.47625 1.55683 2.38836 2.45884 3.06285 3.26436 3.89494 3.94058 4.06182 4.17617 4.26752 4.58432 4.67986 4.83752 4.86272 4.88641 5.01079 5.05618 5.12634 5.21886 5.25630 5.36112 5.56713 5.63510 5.80130 6.02255 6.11107 6.38799 6.40191 6.89548 7.36142 7.52165 9.00551 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.035421 B = 0.010010 C = 0.009828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.302560 B = 2796.427690 C = 2848.186190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.064 3.936 3 H 0.021 0.979 4 C -0.497 4.497 5 H 0.042 0.958 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.941 3.059 9 H -0.284 1.284 10 H -0.285 1.285 11 H -0.267 1.267 12 C -0.070 4.070 13 C 0.490 3.510 14 O -0.526 6.526 15 O -0.498 6.498 16 C -0.111 4.111 17 C -0.157 4.157 18 C 0.057 3.943 19 O -0.389 6.389 20 C 0.088 3.912 21 H 0.052 0.948 22 H 0.029 0.971 23 H 0.037 0.963 24 H 0.258 0.742 25 H 0.408 0.592 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 -2.433 -13.266 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.046 3.954 3 H 0.039 0.961 4 C -0.535 4.535 5 H 0.061 0.939 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.767 3.233 9 H -0.209 1.209 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.071 4.071 13 C 0.333 3.667 14 O -0.414 6.414 15 O -0.311 6.311 16 C -0.149 4.149 17 C -0.195 4.195 18 C -0.019 4.019 19 O -0.308 6.308 20 C 0.011 3.989 21 H 0.070 0.930 22 H 0.048 0.952 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.267 0.733 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.563 -2.193 -12.901 13.562 hybrid contribution -0.483 -0.731 1.463 1.705 sum 3.080 -2.923 -11.437 12.200 Atomic orbital electron populations 1.21898 0.98438 0.99952 0.99461 1.18492 0.93099 0.94142 0.89696 0.96098 1.21211 1.29845 1.10872 0.91571 0.93932 1.25540 0.95811 0.95821 1.01399 1.69985 1.38159 1.24227 1.23542 0.85879 0.79101 0.78419 0.79853 1.20899 1.21142 1.19190 1.21325 0.98083 0.88387 0.99353 1.23416 0.76381 0.88765 0.78112 1.90678 1.36628 1.77122 1.36961 1.84686 1.72248 1.27284 1.46860 1.21714 1.00907 0.99801 0.92444 1.22393 0.96804 1.02809 0.97445 1.22745 0.94165 0.97720 0.87247 1.87920 1.74096 1.54601 1.14152 1.22383 0.90149 0.98818 0.87518 0.92957 0.95219 0.94388 0.93307 0.73263 0.91646 0.90013 0.89723 0.88559 0.87033 0.92584 0.91530 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.00 8.33 71.98 0.60 -6.41 16 2 C 0.06 3.15 1.65 -11.54 -0.02 3.13 16 3 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.50 -27.45 6.32 25.60 0.16 -27.29 16 5 H 0.04 2.39 6.27 -2.91 -0.02 2.37 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -53.90 11.32 21.45 0.24 -53.66 16 8 Si 0.94 45.59 29.54 68.60 2.03 47.61 16 9 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 10 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 C -0.07 -2.75 0.29 -52.83 -0.02 -2.76 16 13 C 0.49 19.73 6.14 71.24 0.44 20.17 16 14 O -0.53 -25.59 13.15 21.96 0.29 -25.30 16 15 O -0.50 -15.26 9.47 -45.97 -0.44 -15.69 16 16 C -0.11 -3.46 4.35 30.71 0.13 -3.33 16 17 C -0.16 -3.80 5.68 30.68 0.17 -3.63 16 18 C 0.06 1.38 6.84 72.01 0.49 1.87 16 19 O -0.39 -12.59 9.66 -133.83 -1.29 -13.89 16 20 C 0.09 3.26 5.23 72.02 0.38 3.64 16 21 H 0.05 2.93 6.07 -2.39 -0.01 2.91 16 22 H 0.03 1.27 6.51 -2.39 -0.02 1.25 16 23 H 0.04 1.98 5.52 -2.39 -0.01 1.97 16 24 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 25 H 0.41 8.98 9.10 -74.05 -0.67 8.30 16 26 H 0.06 2.09 6.62 -2.39 -0.02 2.07 16 27 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.08 2.17 5.55 -2.39 -0.01 2.16 16 29 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.08 3.39 6.72 -2.38 -0.02 3.37 16 Total: -1.00 -67.22 254.11 4.07 -63.15 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.45 Total: 11.27 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 2.79 Total: -13.50 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.24 Total: -53.66 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -1.44 Total: -54.88 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -67.22 4.07 -63.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709471261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.934 kcal (2) G-P(sol) polarization free energy of solvation -67.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds