Wall clock time and date at job start Mon Mar 30 2020 03:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 5 5 C 1.50697 * 109.46852 * 185.00266 * 4 2 1 6 6 H 1.08000 * 120.00479 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00033 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00019 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00224 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47170 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47199 * 120.00036 * 9 7 5 12 12 H 1.48500 * 109.47080 * 239.99855 * 9 7 5 13 13 S 1.81002 * 109.47089 * 240.00334 * 2 1 3 14 14 C 1.76205 * 100.00139 * 64.99961 * 13 2 1 15 15 N 1.29402 * 122.88632 * 0.02562 * 14 13 2 16 16 C 1.46945 * 110.08714 * 179.97438 * 15 14 13 17 17 C 1.54161 * 104.02672 * 0.02562 * 16 15 14 18 18 H 1.08998 * 110.65838 * 241.54860 * 17 16 15 19 19 C 1.53007 * 110.65296 * 118.61290 * 17 16 15 20 20 N 1.36866 * 122.88926 * 179.73293 * 14 13 2 21 21 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 22 22 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 25 25 H 1.09002 * 109.47223 * 64.99920 * 4 2 1 26 26 H 0.96995 * 120.00227 * 179.97438 * 8 7 5 27 27 H 1.09004 * 110.51570 * 118.63587 * 16 15 14 28 28 H 1.08996 * 110.51903 * 241.36350 * 16 15 14 29 29 H 1.09006 * 109.46903 * 60.00323 * 19 17 16 30 30 H 1.09001 * 109.46821 * 180.02562 * 19 17 16 31 31 H 1.08995 * 109.47323 * 299.99937 * 19 17 16 32 32 H 0.97000 * 125.81233 * 0.02562 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3126 6 1 4.0790 -0.0861 0.5391 7 6 4.2305 -1.1926 2.3582 8 7 3.5764 -1.8361 3.3004 9 14 6.0922 -1.0613 2.4365 10 1 6.5838 -0.2918 1.2655 11 1 6.4871 -0.3648 3.6872 12 1 6.6855 -2.4225 2.4195 13 16 2.1334 -0.8532 -1.4779 14 6 1.5440 0.2424 -2.7258 15 7 0.8774 1.3188 -2.4581 16 6 0.5279 2.0185 -3.7021 17 6 1.1286 1.1318 -4.8109 18 1 1.8786 1.6820 -5.3792 19 6 0.0296 0.6074 -5.7373 20 7 1.7567 0.0312 -4.0612 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6055 -0.2618 2.1369 25 1 1.7517 -1.7716 1.2055 26 1 4.0608 -2.2429 4.0358 27 1 -0.5546 2.0855 -3.8115 28 1 0.9770 3.0114 -3.7211 29 1 -0.4877 1.4482 -6.1996 30 1 0.4748 -0.0164 -6.5124 31 1 -0.6812 0.0166 -5.1597 32 1 2.2371 -0.7175 -4.4479 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710015473.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:45 Heat of formation + Delta-G solvation = -4.501192 kcal Electronic energy + Delta-G solvation = -13714.071969 eV Core-core repulsion = 11413.801441 eV Total energy + Delta-G solvation = -2300.270528 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.099 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.80723 -36.43884 -34.15253 -33.17493 -32.11893 -29.38235 -27.23248 -25.22279 -22.73416 -22.41896 -21.63821 -19.11376 -18.47996 -17.03785 -16.53418 -16.39690 -15.54220 -15.21013 -14.72285 -14.32811 -14.01069 -13.67979 -13.37774 -13.27680 -13.02328 -12.85187 -12.69333 -12.65693 -12.40436 -12.21809 -12.17328 -11.42053 -11.22970 -11.01875 -10.64639 -10.52708 -9.23436 -8.59882 -8.17896 -6.26706 0.46577 1.36918 1.41245 1.42719 1.43617 1.55909 2.43664 2.76126 3.17077 3.59668 4.05190 4.18259 4.18771 4.32582 4.52579 4.62382 4.64454 4.72098 4.87829 4.97807 5.03100 5.11094 5.27506 5.33037 5.40845 5.45866 5.54597 5.80148 6.20585 6.63330 6.85648 6.92837 7.41397 8.94040 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.044898 B = 0.006461 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.479478 B = 4332.377721 C = 4649.939928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.037 4.037 3 H 0.075 0.925 4 C 0.042 3.958 5 C -0.530 4.530 6 H 0.062 0.938 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.958 3.042 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.278 1.278 13 S -0.050 6.050 14 C 0.350 3.650 15 N -0.610 5.610 16 C 0.025 3.975 17 C 0.107 3.893 18 H 0.095 0.905 19 C -0.148 4.148 20 N -0.733 5.733 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.053 0.947 24 H 0.015 0.985 25 H 0.004 0.996 26 H 0.263 0.737 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.221 4.473 -17.067 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 H 0.094 0.906 4 C 0.004 3.996 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.783 3.217 10 H -0.188 1.188 11 H -0.205 1.205 12 H -0.204 1.204 13 S 0.182 5.818 14 C -0.036 4.036 15 N -0.345 5.345 16 C -0.107 4.107 17 C 0.000 4.000 18 H 0.113 0.887 19 C -0.206 4.206 20 N -0.380 5.380 21 H 0.080 0.920 22 H 0.097 0.903 23 H 0.073 0.927 24 H 0.034 0.966 25 H 0.023 0.977 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -4.984 3.995 -16.325 17.530 hybrid contribution 0.624 0.455 -0.259 0.815 sum -4.360 4.450 -16.584 17.716 Atomic orbital electron populations 1.22028 0.92419 1.01942 1.03115 1.23179 0.98891 1.00829 0.93777 0.90628 1.18909 0.95605 0.94524 0.90586 1.21596 0.92770 1.34238 1.08255 0.91982 1.25843 1.03308 0.94832 0.95221 1.70081 1.37444 1.36860 1.12733 0.85491 0.79949 0.78016 0.78216 1.18819 1.20483 1.20364 1.86030 1.69465 1.29587 0.96742 1.25225 0.93399 0.95995 0.89030 1.74762 1.24507 1.08961 1.26286 1.23269 1.01592 0.98441 0.87420 1.22363 0.96041 0.87817 0.93808 0.88719 1.22076 0.97425 1.02356 0.98762 1.45997 1.60770 1.28862 1.02341 0.92031 0.90308 0.92741 0.96643 0.97735 0.92766 0.89149 0.89739 0.89337 0.91122 0.93604 0.73846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 8.99 71.98 0.65 -4.46 16 2 C -0.04 -1.62 2.20 30.60 0.07 -1.55 16 3 H 0.08 3.46 8.07 -2.39 -0.02 3.44 16 4 C 0.04 2.22 4.44 29.85 0.13 2.35 16 5 C -0.53 -29.87 8.53 25.60 0.22 -29.65 16 6 H 0.06 3.45 7.60 -2.91 -0.02 3.43 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 9 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 10 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 S -0.05 -1.95 21.07 -56.49 -1.19 -3.14 16 14 C 0.35 11.64 7.78 179.99 1.40 13.04 16 15 N -0.61 -20.65 8.63 -345.20 -2.98 -23.63 16 16 C 0.03 0.62 7.69 86.69 0.67 1.29 16 17 C 0.11 2.14 4.40 45.25 0.20 2.34 16 18 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 19 C -0.15 -2.21 9.44 71.98 0.68 -1.53 16 20 N -0.73 -18.46 6.24 -324.28 -2.02 -20.49 16 21 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 22 H 0.08 2.84 5.79 -2.39 -0.01 2.82 16 23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 27 H 0.09 2.01 7.73 -2.38 -0.02 1.99 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.42 8.98 8.96 -92.71 -0.83 8.15 16 Total: -1.00 -64.32 278.77 0.86 -63.46 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.27 Total: 10.38 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 4.47 Total: -17.37 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -4.72 Total: -99.88 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -1.19 Total: -3.14 kcal Total: -64.32 0.86 -63.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710015473.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.956 kcal (2) G-P(sol) polarization free energy of solvation -64.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds