Wall clock time and date at job start Mon Mar 30 2020 03:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50697 * 109.47463 * 295.00146 * 4 2 1 6 6 H 1.08007 * 119.99713 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00558 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99821 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00224 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47114 * 89.99881 * 9 7 5 11 11 H 1.48492 * 109.47167 * 209.99907 * 9 7 5 12 12 H 1.48502 * 109.46795 * 330.00324 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 14 14 C 1.50699 * 110.45228 * 299.29660 * 13 2 1 15 15 O 1.20824 * 120.00478 * 359.97438 * 14 13 2 16 16 O 1.34231 * 119.99866 * 180.02562 * 14 13 2 17 17 C 1.54508 * 110.51237 * 61.90301 * 13 2 1 18 18 C 1.54475 * 104.06341 * 118.64490 * 17 13 2 19 19 O 1.44428 * 104.80559 * 23.97921 * 18 17 13 20 20 C 1.44645 * 105.36660 * 319.56416 * 19 18 17 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 25 25 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 26 26 H 0.97002 * 120.00259 * 179.97438 * 8 7 5 27 27 H 0.96698 * 117.00477 * 179.97438 * 16 14 13 28 28 H 1.09001 * 110.50785 * 237.29046 * 17 13 2 29 29 H 1.09000 * 110.51243 * 359.86056 * 17 13 2 30 30 H 1.09002 * 110.37067 * 142.80462 * 18 17 13 31 31 H 1.09000 * 110.37501 * 265.03387 * 18 17 13 32 32 H 1.09000 * 110.34009 * 281.59021 * 20 19 18 33 33 H 1.08998 * 110.50992 * 159.18081 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4024 3.7283 8 7 2.6757 -1.5193 3.8511 9 14 1.4989 0.5627 5.2497 10 1 0.1713 0.0954 5.7232 11 1 2.5080 0.3519 6.3185 12 1 1.4251 2.0080 4.9166 13 6 2.0400 -0.7212 -1.2494 14 6 1.5641 -2.1510 -1.2632 15 8 0.8782 -2.5683 -0.3603 16 8 1.9031 -2.9613 -2.2782 17 6 1.5779 0.0157 -2.5264 18 6 2.8954 0.4347 -3.2155 19 8 3.8828 -0.4961 -2.7210 20 6 3.5823 -0.6633 -1.3160 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.6055 -1.7198 1.2950 25 1 3.1264 -0.7995 1.2055 26 1 2.9230 -1.8423 4.7317 27 1 1.5745 -3.8701 -2.2430 28 1 1.0073 -0.6550 -3.1689 29 1 0.9840 0.8923 -2.2678 30 1 2.8014 0.3487 -4.2980 31 1 3.1608 1.4549 -2.9383 32 1 3.9552 0.1870 -0.7450 33 1 4.0134 -1.5916 -0.9412 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710019633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:52 Heat of formation + Delta-G solvation = -169.597248 kcal Electronic energy + Delta-G solvation = -16958.310162 eV Core-core repulsion = 14175.834910 eV Total energy + Delta-G solvation = -2782.475252 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.09066 -39.75971 -37.59868 -36.30289 -34.55168 -31.95228 -30.22874 -28.78671 -25.61229 -25.22102 -23.31750 -22.51451 -20.49900 -18.93224 -18.47088 -17.67639 -17.02080 -16.61630 -16.45168 -16.31753 -15.45526 -14.89693 -14.57134 -14.23075 -13.88035 -13.66257 -13.41902 -13.09670 -12.81344 -12.78919 -12.70789 -12.25927 -12.21855 -12.01593 -11.89715 -11.71261 -11.21529 -10.89874 -10.74376 -10.72224 -10.40022 -8.13921 -6.21736 1.24064 1.39545 1.40991 1.51247 2.12276 2.43051 2.97458 3.20054 3.49587 3.73517 3.73920 4.15197 4.27479 4.40712 4.47992 4.63882 4.71133 4.76000 4.82661 4.89223 4.96615 5.05255 5.27192 5.38365 5.49299 5.54808 5.66149 5.79458 5.86062 6.07738 6.31675 6.94424 7.12150 7.44848 8.98190 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.035724 B = 0.008097 C = 0.007794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.601958 B = 3457.064641 C = 3591.854596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.055 4.055 3 H 0.082 0.918 4 C 0.019 3.981 5 C -0.525 4.525 6 H 0.062 0.938 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.259 1.259 13 C -0.079 4.079 14 C 0.486 3.514 15 O -0.524 6.524 16 O -0.507 6.507 17 C -0.134 4.134 18 C 0.044 3.956 19 O -0.384 6.384 20 C 0.070 3.930 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.013 0.987 25 H -0.013 1.013 26 H 0.259 0.741 27 H 0.421 0.579 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 3.533 -14.868 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.074 4.074 3 H 0.100 0.900 4 C -0.018 4.018 5 C -0.563 4.563 6 H 0.081 0.919 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.784 3.216 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.183 1.183 13 C -0.080 4.080 14 C 0.329 3.671 15 O -0.413 6.413 16 O -0.320 6.320 17 C -0.172 4.172 18 C -0.032 4.032 19 O -0.303 6.303 20 C -0.007 4.007 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.089 0.911 24 H 0.031 0.969 25 H 0.006 0.994 26 H 0.068 0.932 27 H 0.282 0.718 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.580 3.611 -14.649 15.170 hybrid contribution -0.445 -0.675 1.530 1.730 sum -2.025 2.935 -13.119 13.595 Atomic orbital electron populations 1.21885 0.94698 1.01872 1.01216 1.21026 0.96695 0.98306 0.91361 0.89984 1.19280 0.94041 0.96347 0.92096 1.21662 1.34064 1.08412 0.92150 0.91949 1.25938 0.95506 0.96110 1.02627 1.70120 1.40576 1.23052 1.23974 0.85541 0.77742 0.79492 0.78838 1.20405 1.21082 1.18331 1.22022 0.97861 0.88436 0.99727 1.23396 0.76401 0.89057 0.78236 1.90723 1.36973 1.76768 1.36853 1.84535 1.72528 1.28148 1.46777 1.23133 0.99758 1.01398 0.92896 1.23661 0.85426 0.93421 1.00683 1.89135 1.53689 1.65364 1.22111 1.23329 0.91270 1.02369 0.83706 0.93425 0.93383 0.91098 0.96898 0.99449 0.93220 0.71841 0.89348 0.87432 0.86403 0.90454 0.90377 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 8.50 71.98 0.61 -4.62 16 2 C -0.06 -2.19 1.39 -10.79 -0.01 -2.20 16 3 H 0.08 3.03 8.12 -2.39 -0.02 3.01 16 4 C 0.02 1.01 3.97 29.84 0.12 1.13 16 5 C -0.52 -29.84 8.41 25.60 0.22 -29.63 16 6 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 7 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 8 N -0.94 -58.70 13.29 21.45 0.28 -58.42 16 9 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 13 C -0.08 -2.60 0.44 -51.91 -0.02 -2.63 16 14 C 0.49 17.34 6.18 71.24 0.44 17.78 16 15 O -0.52 -23.14 12.33 21.97 0.27 -22.86 16 16 O -0.51 -14.05 13.15 -51.42 -0.68 -14.73 16 17 C -0.13 -3.14 5.79 31.61 0.18 -2.95 16 18 C 0.04 0.93 7.64 72.48 0.55 1.49 16 19 O -0.38 -11.33 11.65 -148.98 -1.74 -13.06 16 20 C 0.07 2.33 5.60 72.49 0.41 2.74 16 21 H 0.05 1.92 6.95 -2.39 -0.02 1.90 16 22 H 0.05 2.00 5.66 -2.39 -0.01 1.99 16 23 H 0.07 2.02 6.64 -2.38 -0.02 2.01 16 24 H 0.01 0.77 5.68 -2.39 -0.01 0.75 16 25 H -0.01 -0.72 7.19 -2.38 -0.02 -0.74 16 26 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 27 H 0.42 7.96 9.10 -74.06 -0.67 7.28 16 28 H 0.09 1.89 7.63 -2.39 -0.02 1.88 16 29 H 0.11 2.15 6.56 -2.39 -0.02 2.14 16 30 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 2.59 7.81 -2.39 -0.02 2.57 16 33 H 0.08 2.77 7.86 -2.39 -0.02 2.75 16 Total: -1.00 -72.89 265.50 3.57 -69.32 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.45 Total: 11.24 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 2.95 Total: -18.73 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.28 Total: -58.42 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -2.14 Total: -50.65 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -72.89 3.57 -69.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710019633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.282 kcal (2) G-P(sol) polarization free energy of solvation -72.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds