Wall clock time and date at job start Mon Mar 30 2020 02:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38334 * 119.95993 * 2 1 4 4 C 1.38283 * 120.16088 * 179.97438 * 3 2 1 5 5 C 1.38098 * 120.08752 * 0.03677 * 4 3 2 6 6 C 1.38982 * 119.91240 * 0.23787 * 5 4 3 7 7 N 1.39533 * 120.07655 * 179.73913 * 6 5 4 8 8 C 1.35941 * 120.00378 * 359.97438 * 7 6 5 9 9 C 1.39067 * 120.00275 * 179.97438 * 8 7 6 10 10 C 1.43201 * 120.00388 * 180.02562 * 9 8 7 11 11 N 8.23233 * 154.09462 * 180.28174 * 2 1 3 12 12 C 1.40867 * 119.99901 * 359.97438 * 9 8 7 13 13 H 1.08009 * 120.00273 * 0.02562 * 12 9 8 14 14 C 1.39689 * 120.00256 * 179.97438 * 12 9 8 15 15 N 1.31090 * 119.99689 * 0.02562 * 14 12 9 16 16 Si 1.86801 * 120.00247 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.46802 * 60.00205 * 16 14 12 18 18 H 1.48497 * 109.47273 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47400 * 300.00459 * 16 14 12 20 20 C 1.38055 * 119.95676 * 180.02562 * 2 1 3 21 21 H 1.08997 * 109.47342 * 89.99751 * 1 2 3 22 22 H 1.08997 * 109.47599 * 210.00507 * 1 2 3 23 23 H 1.09011 * 109.47222 * 330.00078 * 1 2 3 24 24 H 1.07998 * 119.91639 * 359.97438 * 3 2 1 25 25 H 1.07999 * 119.95561 * 180.02562 * 4 3 2 26 26 H 1.08002 * 120.04066 * 179.97438 * 5 4 3 27 27 H 0.97001 * 119.99400 * 179.97438 * 7 6 5 28 28 H 1.08002 * 120.00121 * 0.02562 * 8 7 6 29 29 H 0.97006 * 119.99816 * 180.02562 * 15 14 12 30 30 H 1.08000 * 120.03919 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1985 0.0000 4 6 3.5806 1.2033 0.0005 5 6 4.2771 0.0109 0.0003 6 6 3.5865 -1.1952 -0.0055 7 7 4.2868 -2.4020 -0.0112 8 6 5.6462 -2.3992 -0.0117 9 6 6.3441 -3.6020 -0.0169 10 6 7.7761 -3.5990 -0.0169 11 7 8.9121 -3.5965 -0.0177 12 6 5.6424 -4.8234 -0.0211 13 1 4.5623 -4.8258 -0.0207 14 6 6.3434 -6.0317 -0.0269 15 7 7.6543 -6.0289 -0.0278 16 14 5.4128 -7.6514 -0.0332 17 1 4.5584 -7.7266 -1.2454 18 1 6.3802 -8.7781 -0.0394 19 1 4.5601 -7.7372 1.1795 20 6 2.1964 -1.1961 -0.0005 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3634 0.8901 0.5139 24 1 1.6558 2.1326 -0.0004 25 1 4.1166 2.1409 0.0010 26 1 5.3571 0.0155 0.0003 27 1 3.8035 -3.2431 -0.0149 28 1 6.1842 -1.4627 -0.0072 29 1 8.1411 -6.8679 -0.0322 30 1 1.6563 -2.1314 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714523235.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:41 Heat of formation + Delta-G solvation = 41.264640 kcal Electronic energy + Delta-G solvation = -14254.693951 eV Core-core repulsion = 11820.964027 eV Total energy + Delta-G solvation = -2433.729923 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.44955 -38.17253 -36.67956 -35.13314 -33.19982 -32.38843 -29.67783 -27.63974 -26.89940 -23.41369 -23.26383 -20.91824 -20.21239 -18.19606 -17.46751 -16.79758 -16.29817 -15.82178 -15.20045 -14.75851 -14.68879 -14.24429 -14.16181 -13.75069 -13.59492 -13.51620 -12.95961 -12.85873 -12.85788 -12.58207 -12.18076 -12.08812 -11.99766 -11.82824 -11.49426 -11.18349 -9.77247 -9.45011 -8.58407 -8.30123 -5.96387 0.49552 0.66950 1.29196 1.42685 1.54421 1.62895 2.21851 2.57421 2.76232 2.90395 3.11946 3.66793 4.01316 4.17026 4.22341 4.40744 4.67494 4.71895 4.72105 4.95220 4.97222 5.10210 5.18599 5.26709 5.40506 5.55426 5.67223 5.79472 5.92309 6.11894 6.32142 6.63895 6.82615 7.11131 7.17783 7.45016 8.37573 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.031175 B = 0.006330 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.931248 B = 4422.346817 C = 5305.131945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.047 4.047 3 C -0.195 4.195 4 C -0.074 4.074 5 C -0.224 4.224 6 C 0.190 3.810 7 N -0.627 5.627 8 C -0.060 4.060 9 C 0.016 3.984 10 C 0.321 3.679 11 N -0.531 5.531 12 C -0.452 4.452 13 H 0.101 0.899 14 C 0.013 3.987 15 N -0.860 5.860 16 Si 0.992 3.008 17 H -0.255 1.255 18 H -0.285 1.285 19 H -0.255 1.255 20 C -0.212 4.212 21 H 0.078 0.922 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.138 0.862 25 H 0.137 0.863 26 H 0.114 0.886 27 H 0.405 0.595 28 H 0.125 0.875 29 H 0.283 0.717 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.099 7.999 0.014 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.048 4.048 3 C -0.216 4.216 4 C -0.092 4.092 5 C -0.247 4.247 6 C 0.086 3.914 7 N -0.242 5.242 8 C -0.184 4.184 9 C 0.006 3.994 10 C 0.009 3.991 11 N -0.212 5.212 12 C -0.485 4.485 13 H 0.119 0.881 14 C -0.198 4.198 15 N -0.490 5.490 16 Si 0.814 3.186 17 H -0.179 1.179 18 H -0.211 1.211 19 H -0.179 1.179 20 C -0.234 4.234 21 H 0.097 0.903 22 H 0.088 0.912 23 H 0.098 0.902 24 H 0.155 0.845 25 H 0.155 0.845 26 H 0.132 0.868 27 H 0.243 0.757 28 H 0.142 0.858 29 H 0.093 0.907 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.015 7.852 0.013 15.200 hybrid contribution -0.058 -1.363 -0.014 1.364 sum -13.073 6.490 -0.002 14.595 Atomic orbital electron populations 1.20824 0.89325 1.03498 1.03021 1.19957 0.97105 0.92136 0.95592 1.21029 0.93924 0.98011 1.08588 1.21108 0.94735 0.97164 0.96240 1.20860 0.99819 0.91950 1.12070 1.18181 0.91911 0.86127 0.95208 1.40985 1.04032 1.06126 1.73060 1.20432 0.83593 0.95121 1.19301 1.15374 0.82342 0.94383 1.07298 1.25897 0.93312 0.88346 0.91524 1.80728 1.14070 1.14004 1.12351 1.19297 0.95063 0.89207 1.44918 0.88106 1.26866 0.95565 1.05381 0.91958 1.69698 1.08865 1.30198 1.40197 0.85054 0.78133 0.75136 0.80323 1.17872 1.21068 1.17860 1.20625 0.91212 0.99230 1.12371 0.90302 0.91156 0.90234 0.84463 0.84534 0.86845 0.75706 0.85757 0.90651 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 10.01 71.24 0.71 -1.14 16 2 C -0.05 -1.15 5.88 -19.89 -0.12 -1.27 16 3 C -0.20 -4.65 9.70 22.30 0.22 -4.44 16 4 C -0.07 -1.95 10.04 22.25 0.22 -1.73 16 5 C -0.22 -7.21 9.30 22.41 0.21 -7.00 16 6 C 0.19 6.38 6.62 38.28 0.25 6.64 16 7 N -0.63 -23.30 5.36 -184.68 -0.99 -24.29 16 8 C -0.06 -2.55 9.91 84.26 0.83 -1.71 16 9 C 0.02 0.79 5.75 -21.19 -0.12 0.67 16 10 C 0.32 17.39 12.42 88.33 1.10 18.48 16 11 N -0.53 -29.87 18.18 19.00 0.35 -29.53 16 12 C -0.45 -21.76 8.82 23.26 0.21 -21.56 16 13 H 0.10 4.30 6.00 -2.91 -0.02 4.28 16 14 C 0.01 0.63 5.48 85.15 0.47 1.09 16 15 N -0.86 -46.58 10.49 21.79 0.23 -46.35 16 16 Si 0.99 37.27 29.56 68.60 2.03 39.30 16 17 H -0.25 -9.05 7.11 99.48 0.71 -8.35 16 18 H -0.29 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 20 C -0.21 -6.06 9.55 22.41 0.21 -5.85 16 21 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 23 H 0.08 1.08 8.09 -2.38 -0.02 1.07 16 24 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 25 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 26 H 0.11 3.74 5.96 -2.91 -0.02 3.72 16 27 H 0.41 14.39 6.50 -92.71 -0.60 13.79 16 28 H 0.12 5.07 5.90 -2.91 -0.02 5.05 16 29 H 0.28 14.54 8.30 -92.70 -0.77 13.77 16 30 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -59.45 269.52 6.37 -53.07 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.57 Total: 25.61 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 4.19 Total: -17.81 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -0.42 Total: -100.17 kcal Atomic # 14 Polarization: 37.27 SS G_CDS: 2.03 Total: 39.30 kcal Total: -59.45 6.37 -53.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714523235.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.338 kcal (2) G-P(sol) polarization free energy of solvation -59.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds