Wall clock time and date at job start Mon Mar 30 2020 03:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09012 * 109.46840 * 2 1 4 4 C 1.50702 * 109.47150 * 240.00366 * 2 1 3 5 5 H 1.08003 * 119.99555 * 245.70951 * 4 2 1 6 6 C 1.37878 * 119.99942 * 65.43358 * 4 2 1 7 7 N 1.31505 * 120.00312 * 355.12156 * 6 4 2 8 8 Si 1.86805 * 119.99454 * 175.11792 * 6 4 2 9 9 H 1.48502 * 109.47063 * 95.00354 * 8 6 4 10 10 H 1.48499 * 109.46807 * 214.99702 * 8 6 4 11 11 H 1.48499 * 109.47411 * 334.99971 * 8 6 4 12 12 C 1.53002 * 109.47514 * 119.99782 * 2 1 3 13 13 C 1.50693 * 109.86846 * 179.30057 * 12 2 1 14 14 O 1.20834 * 119.99985 * 95.70830 * 13 12 2 15 15 O 1.34228 * 120.00223 * 275.69780 * 13 12 2 16 16 C 1.54096 * 109.88034 * 300.30826 * 12 2 1 17 17 C 1.54813 * 104.18629 * 121.44984 * 16 12 2 18 18 H 1.08995 * 110.90881 * 262.68290 * 17 16 12 19 19 C 1.53005 * 110.90393 * 139.08066 * 17 16 12 20 20 C 1.54993 * 102.09326 * 20.88248 * 17 16 12 21 21 O 1.43745 * 109.87613 * 58.29256 * 12 2 1 22 22 H 1.09006 * 109.46598 * 175.00146 * 1 2 3 23 23 H 1.09005 * 109.46895 * 294.99378 * 1 2 3 24 24 H 1.08994 * 109.47142 * 54.99889 * 1 2 3 25 25 H 0.97001 * 120.00373 * 179.97438 * 7 6 4 26 26 H 0.96701 * 117.00212 * 180.02562 * 15 13 12 27 27 H 1.08997 * 110.49390 * 240.12886 * 16 12 2 28 28 H 1.09002 * 110.48938 * 2.77663 * 16 12 2 29 29 H 1.09002 * 109.47052 * 60.00411 * 19 17 16 30 30 H 1.09008 * 109.46639 * 180.02562 * 19 17 16 31 31 H 1.09000 * 109.46810 * 300.00054 * 19 17 16 32 32 H 1.08997 * 110.61918 * 81.47281 * 20 17 16 33 33 H 1.08998 * 110.61724 * 204.47261 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5751 -1.6391 -1.1341 6 6 1.7941 -0.1775 -2.4797 7 7 1.0475 0.8979 -2.6044 8 14 2.5321 -0.9832 -3.9949 9 1 1.5413 -1.9139 -4.5928 10 1 2.8902 0.0625 -4.9866 11 1 3.7513 -1.7385 -3.6098 12 6 2.0401 -0.7212 1.2493 13 6 3.5469 -0.7414 1.2496 14 8 4.1623 0.1027 1.8570 15 8 4.2055 -1.6971 0.5754 16 6 1.5254 -0.0066 2.5138 17 6 0.7287 -1.0984 3.2688 18 1 -0.3377 -1.0174 3.0583 19 6 0.9933 -1.0247 4.7739 20 6 1.3137 -2.4016 2.6674 21 8 1.5332 -2.0660 1.2784 22 1 -0.3633 -1.0238 -0.0895 23 1 -0.3633 0.4342 0.9315 24 1 -0.3633 0.5894 -0.8417 25 1 0.8802 1.2730 -3.4831 26 1 5.1717 -1.6690 0.6053 27 1 2.3602 0.3445 3.1202 28 1 0.8729 0.8238 2.2438 29 1 0.6898 -0.0472 5.1488 30 1 0.4224 -1.8023 5.2816 31 1 2.0565 -1.1725 4.9635 32 1 2.2559 -2.6586 3.1516 33 1 0.5994 -3.2200 2.7567 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718394481.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:40 Heat of formation + Delta-G solvation = -167.649012 kcal Electronic energy + Delta-G solvation = -17192.498796 eV Core-core repulsion = 14410.108026 eV Total energy + Delta-G solvation = -2782.390770 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.93058 -39.83741 -37.06973 -36.10114 -34.43304 -33.21254 -29.56615 -27.74684 -26.85729 -25.52656 -23.13407 -21.61869 -20.76652 -19.04034 -18.45907 -17.76163 -17.41220 -16.49488 -16.20710 -16.08015 -15.14329 -14.67698 -14.41921 -14.35632 -13.62089 -13.56570 -13.20300 -12.97773 -12.76055 -12.69404 -12.49900 -12.24259 -12.20058 -12.13261 -12.01558 -11.69200 -11.46453 -11.23730 -10.85010 -10.48100 -10.45373 -8.09309 -6.17986 1.22051 1.41573 1.42508 1.53966 2.26437 2.45292 2.92873 3.22042 3.58984 3.79802 4.00406 4.15164 4.36889 4.48308 4.59868 4.71610 4.77170 4.81999 4.87502 4.96565 5.07140 5.21948 5.23211 5.23892 5.39910 5.56886 5.59291 5.84205 5.98469 6.05385 6.34948 6.91669 7.10987 7.48364 8.97530 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.033381 B = 0.010056 C = 0.009047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.590030 B = 2783.638931 C = 3094.157719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.052 3.948 3 H 0.010 0.990 4 C -0.518 4.518 5 H 0.065 0.935 6 C 0.010 3.990 7 N -0.919 5.919 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.127 3.873 13 C 0.488 3.512 14 O -0.554 6.554 15 O -0.495 6.495 16 C -0.139 4.139 17 C -0.116 4.116 18 H 0.095 0.905 19 C -0.134 4.134 20 C 0.031 3.969 21 O -0.354 6.354 22 H 0.034 0.966 23 H 0.041 0.959 24 H 0.051 0.949 25 H 0.260 0.740 26 H 0.412 0.588 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 -5.188 11.654 12.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.033 3.967 3 H 0.028 0.972 4 C -0.556 4.556 5 H 0.083 0.917 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.777 3.223 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.193 1.193 12 C 0.086 3.914 13 C 0.333 3.667 14 O -0.446 6.446 15 O -0.305 6.305 16 C -0.177 4.177 17 C -0.135 4.135 18 H 0.114 0.886 19 C -0.191 4.191 20 C -0.046 4.046 21 O -0.272 6.272 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.272 0.728 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.187 -5.018 11.474 12.525 hybrid contribution 1.185 0.094 -1.081 1.607 sum 0.998 -4.924 10.393 11.544 Atomic orbital electron populations 1.21518 0.96021 0.99912 0.99496 1.18776 0.94766 0.93304 0.89859 0.97244 1.21492 1.34615 1.08302 0.91155 0.91693 1.25691 0.95592 0.95756 1.01740 1.70028 1.38669 1.23216 1.24012 0.85648 0.79071 0.78156 0.79454 1.20286 1.21057 1.19332 1.22182 0.84059 0.85550 0.99642 1.24343 0.92851 0.77109 0.72438 1.90579 1.70314 1.39405 1.44338 1.84715 1.27064 1.51131 1.67631 1.23152 1.01119 0.99669 0.93746 1.22761 1.00734 0.93037 0.96973 0.88641 1.21695 1.01934 1.03311 0.92202 1.24039 1.00506 0.98459 0.81550 1.89146 1.84344 1.27932 1.25791 0.94683 0.94031 0.93040 0.93098 0.72846 0.89750 0.89361 0.91372 0.90146 0.92880 0.92275 0.86563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.30 8.54 71.98 0.61 -4.69 16 2 C 0.05 2.61 1.58 -11.54 -0.02 2.60 16 3 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 4 C -0.52 -28.85 7.50 25.60 0.19 -28.66 16 5 H 0.06 3.67 6.43 -2.91 -0.02 3.65 16 6 C 0.01 0.59 5.36 84.66 0.45 1.04 16 7 N -0.92 -53.57 11.60 21.45 0.25 -53.32 16 8 Si 0.95 44.81 29.54 68.60 2.03 46.84 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 C 0.13 5.38 0.46 -11.17 -0.01 5.37 16 13 C 0.49 20.97 6.64 71.23 0.47 21.45 16 14 O -0.55 -24.67 16.32 21.94 0.36 -24.31 16 15 O -0.50 -19.30 11.82 -46.77 -0.55 -19.85 16 16 C -0.14 -4.79 5.18 31.58 0.16 -4.63 16 17 C -0.12 -3.07 3.73 -9.49 -0.04 -3.10 16 18 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 19 C -0.13 -2.61 9.19 71.98 0.66 -1.95 16 20 C 0.03 0.89 7.12 72.66 0.52 1.40 16 21 O -0.35 -14.38 9.71 -137.07 -1.33 -15.71 16 22 H 0.03 1.65 7.82 -2.38 -0.02 1.63 16 23 H 0.04 1.66 6.26 -2.38 -0.01 1.65 16 24 H 0.05 2.71 6.46 -2.39 -0.02 2.70 16 25 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 26 H 0.41 11.40 9.10 -74.06 -0.67 10.73 16 27 H 0.08 2.90 6.45 -2.39 -0.02 2.89 16 28 H 0.09 3.05 6.24 -2.39 -0.01 3.04 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.05 1.07 8.09 -2.39 -0.02 1.05 16 32 H 0.06 1.61 8.01 -2.39 -0.02 1.59 16 33 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -67.34 269.48 4.21 -63.14 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.44 Total: 14.40 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 3.02 Total: -11.17 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.25 Total: -53.32 kcal Atomic # 8 Polarization: -58.35 SS G_CDS: -1.53 Total: -59.87 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -67.34 4.21 -63.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718394481.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.514 kcal (2) G-P(sol) polarization free energy of solvation -67.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds