Wall clock time and date at job start Mon Mar 30 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47152 * 2 1 4 4 C 1.50700 * 109.47275 * 239.99430 * 2 1 3 5 5 H 1.07999 * 120.00541 * 239.99773 * 4 2 1 6 6 C 1.37875 * 119.99976 * 60.00472 * 4 2 1 7 7 N 1.31521 * 119.99641 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00262 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46962 * 89.99850 * 8 6 4 10 10 H 1.48502 * 109.47012 * 209.99605 * 8 6 4 11 11 H 1.48499 * 109.47030 * 329.99784 * 8 6 4 12 12 C 1.53008 * 109.47043 * 119.99880 * 2 1 3 13 13 C 1.50700 * 109.87074 * 65.44709 * 12 2 1 14 14 O 1.20821 * 119.99688 * 264.55658 * 13 12 2 15 15 O 1.34229 * 119.99801 * 84.55364 * 13 12 2 16 16 C 1.54099 * 109.87746 * 304.28432 * 12 2 1 17 17 C 1.54984 * 104.25432 * 242.74353 * 16 12 2 18 18 H 1.09003 * 110.84226 * 262.54019 * 17 16 12 19 19 C 1.52996 * 111.04900 * 138.88478 * 17 16 12 20 20 C 1.54997 * 102.01247 * 20.66679 * 17 16 12 21 21 O 1.43743 * 109.87716 * 186.45808 * 12 2 1 22 22 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47064 * 300.00296 * 1 2 3 24 24 H 1.09002 * 109.46707 * 60.00638 * 1 2 3 25 25 H 0.97007 * 119.99753 * 180.02562 * 7 6 4 26 26 H 0.96703 * 116.99902 * 179.97438 * 15 13 12 27 27 H 1.09006 * 110.48596 * 1.28339 * 16 12 2 28 28 H 1.08995 * 110.48837 * 123.79722 * 16 12 2 29 29 H 1.08996 * 109.47622 * 305.85460 * 19 17 16 30 30 H 1.09001 * 109.47719 * 65.85884 * 19 17 16 31 31 H 1.09006 * 109.47239 * 185.85354 * 19 17 16 32 32 H 1.09002 * 110.61957 * 204.59612 * 20 17 16 33 33 H 1.09000 * 110.61969 * 81.75502 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0079 9 1 1.3449 -2.1618 -4.4122 10 1 2.4874 -0.1405 -5.1120 11 1 3.6310 -1.7568 -3.7118 12 6 2.0400 -0.7213 1.2493 13 6 1.6555 -2.1773 1.1930 14 8 0.6524 -2.5591 1.7479 15 8 2.4273 -3.0500 0.5264 16 6 1.4450 -0.0673 2.5115 17 6 2.6777 0.4796 3.2752 18 1 2.9900 -0.2148 4.0553 19 6 2.3915 1.8635 3.8614 20 6 3.7419 0.5641 2.1515 21 8 3.4693 -0.5961 1.3367 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7083 1.1607 -3.4845 26 1 2.1401 -3.9733 0.5186 27 1 0.7755 0.7486 2.2389 28 1 0.9173 -0.8080 3.1123 29 1 2.0443 2.5284 3.0706 30 1 1.6230 1.7808 4.6299 31 1 3.3033 2.2674 4.3014 32 1 4.7470 0.5117 2.5700 33 1 3.6161 1.4785 1.5716 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718394483.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:41 Heat of formation + Delta-G solvation = -145.645770 kcal Electronic energy + Delta-G solvation = -17219.972716 eV Core-core repulsion = 14438.536078 eV Total energy + Delta-G solvation = -2781.436638 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.30179 -38.35478 -35.41962 -34.20556 -33.13645 -31.29816 -27.88666 -26.22559 -25.10555 -23.71990 -21.77955 -20.17704 -18.98625 -17.51009 -16.84992 -15.89864 -15.48702 -15.03405 -14.43533 -14.16926 -13.68357 -13.37001 -13.02295 -12.68036 -12.09770 -11.98146 -11.66266 -11.43458 -10.99421 -10.93300 -10.88828 -10.76907 -10.48204 -10.39977 -10.29188 -10.17559 -9.88752 -9.67822 -8.85678 -8.68638 -8.31900 -5.98279 -4.02516 2.96168 3.33778 3.39995 3.46216 3.78794 4.33933 4.48573 4.87875 5.06612 5.24227 5.35553 5.60718 5.64925 5.81246 5.86549 5.93198 6.10384 6.18960 6.22217 6.32314 6.43286 6.50966 6.80212 7.03296 7.05783 7.14864 7.45270 7.64883 7.88266 8.10473 8.35722 8.68780 9.04608 9.62023 11.08438 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.028491 B = 0.010579 C = 0.009603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.535475 B = 2646.215512 C = 2915.061654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.040 3.960 3 H 0.046 0.954 4 C -0.510 4.510 5 H 0.075 0.925 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.893 3.107 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.272 1.272 12 C 0.125 3.875 13 C 0.518 3.482 14 O -0.535 6.535 15 O -0.491 6.491 16 C -0.142 4.142 17 C -0.131 4.131 18 H 0.079 0.921 19 C -0.139 4.139 20 C 0.050 3.950 21 O -0.345 6.345 22 H 0.029 0.971 23 H 0.016 0.984 24 H 0.090 0.910 25 H 0.259 0.741 26 H 0.391 0.609 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -0.321 9.569 10.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.022 3.978 3 H 0.064 0.936 4 C -0.548 4.548 5 H 0.093 0.907 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.197 1.197 12 C 0.085 3.915 13 C 0.362 3.638 14 O -0.426 6.426 15 O -0.299 6.299 16 C -0.179 4.179 17 C -0.149 4.149 18 H 0.097 0.903 19 C -0.196 4.196 20 C -0.028 4.028 21 O -0.264 6.264 22 H 0.048 0.952 23 H 0.035 0.965 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.247 0.753 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.840 -0.033 9.470 9.887 hybrid contribution -0.104 -0.913 -0.883 1.275 sum 2.736 -0.946 8.586 9.061 Atomic orbital electron populations 1.21939 0.97620 0.99839 1.00806 1.19120 0.93089 0.96103 0.89497 0.93589 1.21355 1.30811 1.12845 0.89755 0.90651 1.24942 0.95077 0.95001 0.99037 1.69889 1.37041 1.23095 1.23336 0.86558 0.79443 0.79334 0.82509 1.20875 1.21376 1.19653 1.22315 0.82563 0.87801 0.98837 1.23129 0.80089 0.88429 0.72109 1.90611 1.27080 1.79352 1.45512 1.84772 1.53825 1.22077 1.69201 1.23215 0.97987 1.01747 0.94967 1.22783 0.96217 0.97833 0.98097 0.90280 1.21694 1.01337 0.95648 1.00971 1.23598 0.98281 0.90375 0.90496 1.88987 1.20160 1.45876 1.71367 0.95184 0.96539 0.89167 0.93082 0.75265 0.88903 0.89783 0.91989 0.92515 0.92574 0.89524 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.46 37.16 0.31 -3.21 16 2 C 0.04 1.01 1.77 -91.77 -0.16 0.84 16 3 H 0.05 1.21 8.01 -51.93 -0.42 0.80 16 4 C -0.51 -14.03 7.74 -34.44 -0.27 -14.30 16 5 H 0.08 2.11 5.90 -52.49 -0.31 1.80 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -25.45 11.32 55.43 0.63 -24.82 16 8 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 12 C 0.13 2.71 0.55 -91.19 -0.05 2.66 16 13 C 0.52 11.36 5.79 36.01 0.21 11.56 16 14 O -0.53 -12.02 15.88 -18.75 -0.30 -12.32 16 15 O -0.49 -9.85 11.48 -44.11 -0.51 -10.36 16 16 C -0.14 -2.54 5.19 -25.11 -0.13 -2.67 16 17 C -0.13 -1.92 3.73 -88.52 -0.33 -2.25 16 18 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 19 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 20 C 0.05 0.81 7.08 38.21 0.27 1.09 16 21 O -0.35 -7.34 10.48 -47.79 -0.50 -7.84 16 22 H 0.03 0.74 7.05 -51.93 -0.37 0.38 16 23 H 0.02 0.34 6.19 -51.93 -0.32 0.02 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.39 5.65 9.10 45.56 0.41 6.06 16 27 H 0.09 1.65 5.70 -51.93 -0.30 1.36 16 28 H 0.08 1.51 6.81 -51.93 -0.35 1.16 16 29 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.09 7.95 -51.93 -0.41 0.68 16 LS Contribution 266.58 15.07 4.02 4.02 Total: -1.00 -31.38 266.58 -5.20 -36.59 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -3.62 Total: 4.06 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 0.10 Total: -6.01 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.63 Total: -24.82 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -1.30 Total: -30.52 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.38 -5.20 -36.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718394483.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.060 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds