Wall clock time and date at job start Mon Mar 30 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47152 * 2 1 4 4 C 1.50700 * 109.47275 * 239.99430 * 2 1 3 5 5 H 1.07999 * 120.00541 * 239.99773 * 4 2 1 6 6 C 1.37875 * 119.99976 * 60.00472 * 4 2 1 7 7 N 1.31521 * 119.99641 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00262 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46962 * 89.99850 * 8 6 4 10 10 H 1.48502 * 109.47012 * 209.99605 * 8 6 4 11 11 H 1.48499 * 109.47030 * 329.99784 * 8 6 4 12 12 C 1.53008 * 109.47043 * 119.99880 * 2 1 3 13 13 C 1.50700 * 109.87074 * 65.44709 * 12 2 1 14 14 O 1.20821 * 119.99688 * 264.55658 * 13 12 2 15 15 O 1.34229 * 119.99801 * 84.55364 * 13 12 2 16 16 C 1.54099 * 109.87746 * 304.28432 * 12 2 1 17 17 C 1.54984 * 104.25432 * 242.74353 * 16 12 2 18 18 H 1.09003 * 110.84226 * 262.54019 * 17 16 12 19 19 C 1.52996 * 111.04900 * 138.88478 * 17 16 12 20 20 C 1.54997 * 102.01247 * 20.66679 * 17 16 12 21 21 O 1.43743 * 109.87716 * 186.45808 * 12 2 1 22 22 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47064 * 300.00296 * 1 2 3 24 24 H 1.09002 * 109.46707 * 60.00638 * 1 2 3 25 25 H 0.97007 * 119.99753 * 180.02562 * 7 6 4 26 26 H 0.96703 * 116.99902 * 179.97438 * 15 13 12 27 27 H 1.09006 * 110.48596 * 1.28339 * 16 12 2 28 28 H 1.08995 * 110.48837 * 123.79722 * 16 12 2 29 29 H 1.08996 * 109.47622 * 305.85460 * 19 17 16 30 30 H 1.09001 * 109.47719 * 65.85884 * 19 17 16 31 31 H 1.09006 * 109.47239 * 185.85354 * 19 17 16 32 32 H 1.09002 * 110.61957 * 204.59612 * 20 17 16 33 33 H 1.09000 * 110.61969 * 81.75502 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0079 9 1 1.3449 -2.1618 -4.4122 10 1 2.4874 -0.1405 -5.1120 11 1 3.6310 -1.7568 -3.7118 12 6 2.0400 -0.7213 1.2493 13 6 1.6555 -2.1773 1.1930 14 8 0.6524 -2.5591 1.7479 15 8 2.4273 -3.0500 0.5264 16 6 1.4450 -0.0673 2.5115 17 6 2.6777 0.4796 3.2752 18 1 2.9900 -0.2148 4.0553 19 6 2.3915 1.8635 3.8614 20 6 3.7419 0.5641 2.1515 21 8 3.4693 -0.5961 1.3367 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7083 1.1607 -3.4845 26 1 2.1401 -3.9733 0.5186 27 1 0.7755 0.7486 2.2389 28 1 0.9173 -0.8080 3.1123 29 1 2.0443 2.5284 3.0706 30 1 1.6230 1.7808 4.6299 31 1 3.3033 2.2674 4.3014 32 1 4.7470 0.5117 2.5700 33 1 3.6161 1.4785 1.5716 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718394483.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:41 Heat of formation + Delta-G solvation = -166.643763 kcal Electronic energy + Delta-G solvation = -17220.883257 eV Core-core repulsion = 14438.536078 eV Total energy + Delta-G solvation = -2782.347179 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.91050 -39.90484 -37.06872 -36.11982 -34.44548 -33.23386 -29.55135 -27.66461 -26.88437 -25.30988 -23.61151 -21.47796 -20.66871 -19.14718 -18.64138 -17.72246 -17.25636 -16.49646 -16.30513 -15.61644 -15.12845 -15.01382 -14.68589 -13.92470 -13.72977 -13.65053 -13.32865 -12.89896 -12.87143 -12.64205 -12.57598 -12.32714 -12.16800 -12.12948 -11.99377 -11.61283 -11.47348 -11.35656 -10.84705 -10.53485 -10.27578 -8.09262 -6.19555 1.25892 1.40789 1.41921 1.53102 2.25222 2.44536 2.93023 3.20381 3.59610 3.83627 3.90078 4.30365 4.37544 4.47181 4.63773 4.69848 4.75495 4.79789 4.89124 4.93736 5.09346 5.11992 5.15704 5.26116 5.42953 5.52968 5.63684 5.77800 5.92012 6.08907 6.31313 6.90669 7.13496 7.47359 8.96221 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.028491 B = 0.010579 C = 0.009603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.535475 B = 2646.215512 C = 2915.061654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.041 3.959 3 H 0.024 0.976 4 C -0.523 4.523 5 H 0.067 0.933 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.122 3.878 13 C 0.514 3.486 14 O -0.546 6.546 15 O -0.497 6.497 16 C -0.140 4.140 17 C -0.117 4.117 18 H 0.096 0.904 19 C -0.135 4.135 20 C 0.039 3.961 21 O -0.370 6.370 22 H 0.017 0.983 23 H 0.041 0.959 24 H 0.065 0.935 25 H 0.260 0.740 26 H 0.414 0.586 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.588 -0.450 10.643 11.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.022 3.978 3 H 0.042 0.958 4 C -0.561 4.561 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.776 3.224 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.082 3.918 13 C 0.358 3.642 14 O -0.438 6.438 15 O -0.308 6.308 16 C -0.177 4.177 17 C -0.136 4.136 18 H 0.114 0.886 19 C -0.192 4.192 20 C -0.037 4.037 21 O -0.290 6.290 22 H 0.036 0.964 23 H 0.060 0.940 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.273 0.727 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.546 -0.177 10.548 11.129 hybrid contribution -0.287 -0.892 -1.213 1.533 sum 3.259 -1.069 9.334 9.945 Atomic orbital electron populations 1.21759 0.97539 0.98871 1.00793 1.18990 0.93091 0.95082 0.90618 0.95770 1.21617 1.30628 1.12785 0.91096 0.91446 1.25660 0.95418 0.95761 1.01697 1.69999 1.37841 1.24098 1.23846 0.85671 0.78911 0.78401 0.79405 1.20430 1.20860 1.19441 1.22185 0.83248 0.87652 0.98754 1.23236 0.79956 0.88909 0.72057 1.90593 1.27405 1.79735 1.46063 1.84708 1.53733 1.23753 1.68601 1.23204 0.99299 1.01414 0.93822 1.22780 0.93585 0.99735 0.97497 0.88583 1.21690 1.02988 0.93598 1.00972 1.23905 1.00615 0.88568 0.90578 1.88945 1.19743 1.47670 1.72610 0.96415 0.94003 0.91670 0.93074 0.72653 0.89191 0.89763 0.92934 0.91084 0.90234 0.86472 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.50 8.46 71.98 0.61 -5.89 16 2 C 0.04 2.05 1.77 -11.54 -0.02 2.03 16 3 H 0.02 1.31 8.01 -2.39 -0.02 1.29 16 4 C -0.52 -29.04 7.74 25.60 0.20 -28.85 16 5 H 0.07 3.79 5.90 -2.91 -0.02 3.77 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -52.85 11.32 21.45 0.24 -52.61 16 8 Si 0.95 44.61 29.54 68.60 2.03 46.63 16 9 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 C 0.12 5.22 0.55 -11.17 -0.01 5.22 16 13 C 0.51 22.20 5.79 71.24 0.41 22.61 16 14 O -0.55 -24.12 15.88 21.98 0.35 -23.77 16 15 O -0.50 -19.58 11.48 -46.77 -0.54 -20.11 16 16 C -0.14 -4.83 5.19 31.64 0.16 -4.67 16 17 C -0.12 -3.15 3.73 -9.43 -0.04 -3.18 16 18 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 19 C -0.14 -2.80 9.19 71.98 0.66 -2.13 16 20 C 0.04 1.23 7.08 72.67 0.51 1.74 16 21 O -0.37 -15.46 10.48 -136.97 -1.44 -16.90 16 22 H 0.02 0.86 7.05 -2.39 -0.02 0.84 16 23 H 0.04 1.79 6.19 -2.39 -0.01 1.77 16 24 H 0.06 3.53 6.07 -2.39 -0.01 3.52 16 25 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 26 H 0.41 11.47 9.10 -74.06 -0.67 10.79 16 27 H 0.09 3.10 5.70 -2.38 -0.01 3.09 16 28 H 0.08 2.90 6.81 -2.39 -0.02 2.88 16 29 H 0.05 1.19 8.11 -2.39 -0.02 1.17 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.06 1.83 7.95 -2.39 -0.02 1.81 16 Total: -1.00 -66.73 266.58 4.04 -62.69 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.45 Total: 16.02 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 2.95 Total: -11.95 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.24 Total: -52.61 kcal Atomic # 8 Polarization: -59.16 SS G_CDS: -1.62 Total: -60.78 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -66.73 4.04 -62.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718394483.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.956 kcal (2) G-P(sol) polarization free energy of solvation -66.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds