Wall clock time and date at job start Mon Mar 30 2020 03:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47104 * 2 1 4 4 H 1.09003 * 109.47190 * 54.59119 * 3 2 1 5 5 C 1.50700 * 109.47091 * 174.58673 * 3 2 1 6 6 H 1.07999 * 119.99924 * 116.17770 * 5 3 2 7 7 C 1.37880 * 120.00178 * 296.18075 * 5 3 2 8 8 N 1.31516 * 120.00085 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99858 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.46963 * 90.00109 * 9 7 5 11 11 H 1.48493 * 109.46975 * 209.99982 * 9 7 5 12 12 H 1.48499 * 109.46959 * 329.99925 * 9 7 5 13 13 S 1.81395 * 109.47450 * 294.58853 * 3 2 1 14 14 C 1.81402 * 103.00225 * 167.59218 * 13 3 2 15 15 C 1.53006 * 109.47179 * 190.45117 * 14 13 3 16 16 C 1.52997 * 109.47229 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47128 * 59.99602 * 16 15 14 18 18 C 1.52996 * 109.47374 * 300.00380 * 17 16 15 19 19 C 1.52997 * 109.47304 * 59.99728 * 18 17 16 20 20 H 1.09001 * 109.46960 * 305.99651 * 1 2 3 21 21 H 1.08996 * 109.47196 * 65.99355 * 1 2 3 22 22 H 1.09000 * 109.47136 * 185.99920 * 1 2 3 23 23 H 1.09004 * 109.46639 * 240.00387 * 2 1 3 24 24 H 1.09000 * 109.47565 * 120.00344 * 2 1 3 25 25 H 0.96993 * 119.99950 * 179.97438 * 8 7 5 26 26 H 1.08998 * 109.46702 * 310.44912 * 14 13 3 27 27 H 1.09003 * 109.47114 * 59.99455 * 15 14 13 28 28 H 1.08998 * 109.47038 * 300.00075 * 15 14 13 29 29 H 1.08998 * 109.47426 * 179.97438 * 16 15 14 30 30 H 1.08998 * 109.47191 * 300.00005 * 16 15 14 31 31 H 1.08998 * 109.46756 * 60.00136 * 17 16 15 32 32 H 1.08995 * 109.47010 * 180.02562 * 17 16 15 33 33 H 1.09007 * 109.46741 * 299.99694 * 18 17 16 34 34 H 1.08996 * 109.47315 * 179.97438 * 18 17 16 35 35 H 1.08998 * 109.47426 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.47191 * 60.00020 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 0.8376 5 6 3.5411 1.4446 0.1340 6 1 4.1541 1.8313 -0.6665 7 6 4.1317 0.9527 1.2787 8 7 5.4416 0.9550 1.3959 9 14 3.0713 0.2843 2.6637 10 1 2.8429 -1.1682 2.4554 11 1 3.7611 0.4958 3.9615 12 1 1.7669 0.9939 2.6749 13 16 1.5707 2.2498 -1.5551 14 6 1.9078 4.0012 -1.2236 15 6 1.3209 4.8554 -2.3492 16 6 1.6046 6.3326 -2.0693 17 6 3.1163 6.5563 -1.9944 18 6 3.7032 5.7020 -0.8690 19 6 3.4195 4.2249 -1.1488 20 1 -0.3633 0.6040 0.8314 21 1 -0.3633 0.4181 -0.9387 22 1 -0.3633 -1.0220 0.1074 23 1 1.8933 -0.5138 -0.8901 24 1 1.8935 -0.5139 0.8899 25 1 5.8571 0.6093 2.2012 26 1 1.4513 4.2858 -0.2757 27 1 0.2438 4.6963 -2.4022 28 1 1.7772 4.5706 -3.2972 29 1 1.1869 6.9411 -2.8714 30 1 1.1479 6.6170 -1.1214 31 1 3.5730 6.2718 -2.9424 32 1 3.3184 7.6085 -1.7946 33 1 3.2464 5.9865 0.0790 34 1 4.7802 5.8611 -0.8159 35 1 3.8372 3.6163 -0.3468 36 1 3.8762 3.9404 -2.0968 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037685569.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:23 Heat of formation + Delta-G solvation = -38.149937 kcal Electronic energy + Delta-G solvation = -14562.419326 eV Core-core repulsion = 12364.230023 eV Total energy + Delta-G solvation = -2198.189303 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.124 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -37.82984 -34.86528 -32.01219 -30.41547 -30.37315 -27.88145 -22.86776 -22.34240 -22.13095 -20.67422 -19.34542 -16.87227 -15.76577 -15.29225 -14.48582 -13.99210 -13.92324 -13.76345 -13.25860 -12.74220 -12.48990 -12.29759 -12.08364 -11.76884 -11.45755 -11.28310 -11.00504 -10.83830 -10.77279 -10.46279 -10.18525 -10.04213 -9.98680 -9.74193 -9.49572 -9.06369 -8.65847 -8.59839 -6.62231 -6.15483 -4.17148 2.76625 3.19837 3.31102 3.31477 3.73581 4.31273 5.03549 5.07622 5.11787 5.25470 5.54120 5.63624 5.80799 5.87259 5.88620 5.89755 5.93307 5.94727 6.05520 6.13173 6.30147 6.42094 6.44965 6.48788 6.54269 6.58278 6.63877 6.69193 6.86905 6.91299 7.16721 7.25660 7.50040 8.34570 8.88250 9.41673 10.94249 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.027743 B = 0.009992 C = 0.008018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.035187 B = 2801.436995 C = 3491.362064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C 0.074 3.926 4 H 0.041 0.959 5 C -0.517 4.517 6 H 0.093 0.907 7 C 0.078 3.922 8 N -0.891 5.891 9 Si 0.875 3.125 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.264 1.264 13 S -0.302 6.302 14 C -0.033 4.033 15 C -0.098 4.098 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.125 4.125 20 H 0.046 0.954 21 H 0.061 0.939 22 H 0.041 0.959 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.265 0.735 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.256 7.168 -3.880 10.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.054 4.054 4 H 0.059 0.941 5 C -0.556 4.556 6 H 0.111 0.889 7 C -0.126 4.126 8 N -0.528 5.528 9 Si 0.704 3.296 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.189 1.189 13 S -0.071 6.071 14 C -0.161 4.161 15 C -0.137 4.137 16 C -0.151 4.151 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.164 4.164 20 H 0.065 0.935 21 H 0.080 0.920 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.536 6.613 -4.704 11.075 hybrid contribution 0.072 0.026 2.001 2.003 sum -7.464 6.639 -2.703 10.349 Atomic orbital electron populations 1.21903 0.97272 1.00038 1.01885 1.21737 0.93892 0.97820 1.01662 1.21159 1.00045 0.93768 0.90456 0.94135 1.21282 0.88068 1.42061 1.04151 0.88885 1.24995 0.94754 0.95040 0.97859 1.69868 1.08869 1.45967 1.28133 0.87005 0.81057 0.79815 0.81736 1.20202 1.22059 1.18894 1.85877 1.85728 1.05269 1.30223 1.22843 0.99427 0.93360 1.00511 1.21374 1.00392 0.93826 0.98080 1.21516 0.96482 0.95911 1.01240 1.21564 0.95563 0.99055 0.99509 1.21578 1.00207 0.95995 0.97817 1.22179 0.93822 0.95688 1.04731 0.93534 0.91987 0.94035 0.91607 0.92374 0.92459 0.90878 0.91894 0.91577 0.92308 0.92218 0.92184 0.92738 0.92546 0.92189 0.87271 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.64 37.16 0.36 -2.44 16 2 C -0.11 -2.44 4.95 -26.73 -0.13 -2.57 16 3 C 0.07 1.73 1.75 -27.89 -0.05 1.68 16 4 H 0.04 0.98 6.93 -51.92 -0.36 0.62 16 5 C -0.52 -13.80 7.07 -34.44 -0.24 -14.04 16 6 H 0.09 2.69 6.54 -52.49 -0.34 2.35 16 7 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 8 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 9 Si 0.87 21.14 24.60 -169.99 -4.18 16.96 16 10 H -0.28 -6.53 6.84 56.52 0.39 -6.15 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.26 -6.15 6.43 56.52 0.36 -5.79 16 13 S -0.30 -6.27 19.46 -107.50 -2.09 -8.36 16 14 C -0.03 -0.59 2.62 -26.73 -0.07 -0.66 16 15 C -0.10 -1.46 5.21 -26.73 -0.14 -1.60 16 16 C -0.11 -1.43 5.92 -26.73 -0.16 -1.58 16 17 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 18 C -0.12 -1.82 5.92 -26.73 -0.16 -1.97 16 19 C -0.13 -2.37 4.51 -26.73 -0.12 -2.49 16 20 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.06 1.09 7.37 -51.93 -0.38 0.71 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 24 H 0.06 1.32 3.77 -51.93 -0.20 1.13 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.11 2.49 5.08 -51.93 -0.26 2.23 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 281.21 15.07 4.24 4.24 Total: -1.00 -27.57 281.21 -8.46 -36.03 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.23 Total: 1.88 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -0.97 Total: -25.35 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.77 Total: -25.39 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.18 Total: 16.96 kcal Atomic # 16 Polarization: -6.27 SS G_CDS: -2.09 Total: -8.36 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.57 -8.46 -36.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037685569.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.120 kcal (2) G-P(sol) polarization free energy of solvation -27.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds