Wall clock time and date at job start Mon Mar 30 2020 03:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47104 * 2 1 4 4 H 1.09003 * 109.47190 * 54.59119 * 3 2 1 5 5 C 1.50700 * 109.47091 * 174.58673 * 3 2 1 6 6 H 1.07999 * 119.99924 * 116.17770 * 5 3 2 7 7 C 1.37880 * 120.00178 * 296.18075 * 5 3 2 8 8 N 1.31516 * 120.00085 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99858 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.46963 * 90.00109 * 9 7 5 11 11 H 1.48493 * 109.46975 * 209.99982 * 9 7 5 12 12 H 1.48499 * 109.46959 * 329.99925 * 9 7 5 13 13 S 1.81395 * 109.47450 * 294.58853 * 3 2 1 14 14 C 1.81402 * 103.00225 * 167.59218 * 13 3 2 15 15 C 1.53006 * 109.47179 * 190.45117 * 14 13 3 16 16 C 1.52997 * 109.47229 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47128 * 59.99602 * 16 15 14 18 18 C 1.52996 * 109.47374 * 300.00380 * 17 16 15 19 19 C 1.52997 * 109.47304 * 59.99728 * 18 17 16 20 20 H 1.09001 * 109.46960 * 305.99651 * 1 2 3 21 21 H 1.08996 * 109.47196 * 65.99355 * 1 2 3 22 22 H 1.09000 * 109.47136 * 185.99920 * 1 2 3 23 23 H 1.09004 * 109.46639 * 240.00387 * 2 1 3 24 24 H 1.09000 * 109.47565 * 120.00344 * 2 1 3 25 25 H 0.96993 * 119.99950 * 179.97438 * 8 7 5 26 26 H 1.08998 * 109.46702 * 310.44912 * 14 13 3 27 27 H 1.09003 * 109.47114 * 59.99455 * 15 14 13 28 28 H 1.08998 * 109.47038 * 300.00075 * 15 14 13 29 29 H 1.08998 * 109.47426 * 179.97438 * 16 15 14 30 30 H 1.08998 * 109.47191 * 300.00005 * 16 15 14 31 31 H 1.08998 * 109.46756 * 60.00136 * 17 16 15 32 32 H 1.08995 * 109.47010 * 180.02562 * 17 16 15 33 33 H 1.09007 * 109.46741 * 299.99694 * 18 17 16 34 34 H 1.08996 * 109.47315 * 179.97438 * 18 17 16 35 35 H 1.08998 * 109.47426 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.47191 * 60.00020 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 0.8376 5 6 3.5411 1.4446 0.1340 6 1 4.1541 1.8313 -0.6665 7 6 4.1317 0.9527 1.2787 8 7 5.4416 0.9550 1.3959 9 14 3.0713 0.2843 2.6637 10 1 2.8429 -1.1682 2.4554 11 1 3.7611 0.4958 3.9615 12 1 1.7669 0.9939 2.6749 13 16 1.5707 2.2498 -1.5551 14 6 1.9078 4.0012 -1.2236 15 6 1.3209 4.8554 -2.3492 16 6 1.6046 6.3326 -2.0693 17 6 3.1163 6.5563 -1.9944 18 6 3.7032 5.7020 -0.8690 19 6 3.4195 4.2249 -1.1488 20 1 -0.3633 0.6040 0.8314 21 1 -0.3633 0.4181 -0.9387 22 1 -0.3633 -1.0220 0.1074 23 1 1.8933 -0.5138 -0.8901 24 1 1.8935 -0.5139 0.8899 25 1 5.8571 0.6093 2.2012 26 1 1.4513 4.2858 -0.2757 27 1 0.2438 4.6963 -2.4022 28 1 1.7772 4.5706 -3.2972 29 1 1.1869 6.9411 -2.8714 30 1 1.1479 6.6170 -1.1214 31 1 3.5730 6.2718 -2.9424 32 1 3.3184 7.6085 -1.7946 33 1 3.2464 5.9865 0.0790 34 1 4.7802 5.8611 -0.8159 35 1 3.8372 3.6163 -0.3468 36 1 3.8762 3.9404 -2.0968 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037685569.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:23 Heat of formation + Delta-G solvation = -52.442957 kcal Electronic energy + Delta-G solvation = -14563.039118 eV Core-core repulsion = 12364.230023 eV Total energy + Delta-G solvation = -2198.809095 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.124 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.10442 -36.71439 -34.01327 -31.74150 -31.63849 -29.68816 -24.77592 -23.66774 -23.43649 -22.35309 -20.65757 -18.90320 -17.40859 -16.99780 -16.06844 -15.66769 -15.13245 -15.08204 -14.93290 -14.36351 -14.10346 -14.01406 -13.54159 -13.23481 -12.96131 -12.76704 -12.71977 -12.30223 -12.13758 -11.99746 -11.86050 -11.66367 -11.41882 -11.33538 -11.05709 -10.92242 -10.52854 -10.36862 -8.39053 -8.23286 -6.34748 1.15237 1.26835 1.31728 1.40487 2.00502 2.28101 3.00899 3.78857 3.85238 4.12545 4.23960 4.27920 4.29563 4.36724 4.43366 4.50815 4.60621 4.63860 4.75825 4.82318 4.95952 5.03193 5.06433 5.17525 5.20767 5.27472 5.27601 5.29029 5.38472 5.40194 5.53321 5.56555 5.63046 6.19676 6.69014 7.26283 8.83225 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.027743 B = 0.009992 C = 0.008018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.035187 B = 2801.436995 C = 3491.362064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.071 3.929 4 H 0.035 0.965 5 C -0.509 4.509 6 H 0.056 0.944 7 C 0.024 3.976 8 N -0.939 5.939 9 Si 0.931 3.069 10 H -0.265 1.265 11 H -0.295 1.295 12 H -0.248 1.248 13 S -0.305 6.305 14 C -0.028 4.028 15 C -0.092 4.092 16 C -0.107 4.107 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.119 4.119 20 H 0.050 0.950 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.266 0.734 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.630 8.303 -4.132 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.058 4.058 4 H 0.053 0.947 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.176 4.176 8 N -0.578 5.578 9 Si 0.758 3.242 10 H -0.191 1.191 11 H -0.223 1.223 12 H -0.172 1.172 13 S -0.074 6.074 14 C -0.157 4.157 15 C -0.131 4.131 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.153 4.153 19 C -0.158 4.158 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.932 7.747 -4.969 13.541 hybrid contribution 0.878 -0.265 1.984 2.185 sum -9.054 7.482 -2.986 12.119 Atomic orbital electron populations 1.21821 0.94092 1.01905 1.02401 1.21683 0.96711 0.96032 1.00781 1.21049 0.97470 0.95433 0.91885 0.94702 1.21389 0.89948 1.40564 1.02922 0.92552 1.25738 0.95739 0.95647 1.00442 1.70008 1.10769 1.47973 1.29072 0.86077 0.79967 0.79789 0.78407 1.19087 1.22275 1.17168 1.85775 1.85176 1.07592 1.28835 1.22994 0.98847 0.91835 1.02028 1.21379 1.00710 0.94792 0.96214 1.21522 0.96128 0.94198 1.02735 1.21544 0.95791 0.99772 0.98095 1.21552 1.00509 0.93936 0.99322 1.21968 0.94303 0.97502 1.02072 0.93040 0.91470 0.91490 0.92465 0.93357 0.92492 0.91097 0.90749 0.91930 0.89398 0.91541 0.92136 0.90182 0.92292 0.92405 0.92000 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.64 71.98 0.69 -4.20 16 2 C -0.11 -4.80 4.95 30.59 0.15 -4.65 16 3 C 0.07 3.29 1.75 29.85 0.05 3.34 16 4 H 0.03 1.66 6.93 -2.39 -0.02 1.65 16 5 C -0.51 -28.16 7.07 25.60 0.18 -27.98 16 6 H 0.06 3.47 6.54 -2.91 -0.02 3.45 16 7 C 0.02 1.35 5.45 84.66 0.46 1.81 16 8 N -0.94 -57.31 13.96 21.45 0.30 -57.01 16 9 Si 0.93 43.81 24.60 68.60 1.69 45.50 16 10 H -0.26 -11.96 6.84 99.48 0.68 -11.28 16 11 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.25 -10.89 6.43 99.48 0.64 -10.25 16 13 S -0.31 -12.57 19.46 -56.49 -1.10 -13.67 16 14 C -0.03 -1.01 2.62 30.60 0.08 -0.93 16 15 C -0.09 -2.53 5.21 30.60 0.16 -2.37 16 16 C -0.11 -2.32 5.92 30.59 0.18 -2.14 16 17 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 18 C -0.11 -3.46 5.92 30.59 0.18 -3.28 16 19 C -0.12 -4.61 4.51 30.59 0.14 -4.47 16 20 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.07 2.19 7.37 -2.39 -0.02 2.18 16 22 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.06 2.48 8.14 -2.38 -0.02 2.47 16 24 H 0.05 2.13 3.77 -2.39 -0.01 2.12 16 25 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 26 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 2.99 5.08 -2.39 -0.01 2.98 16 36 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -61.27 281.21 4.28 -56.99 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.93 Total: 15.53 kcal Atomic # 6 Polarization: -49.81 SS G_CDS: 2.46 Total: -47.35 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.30 Total: -57.01 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.69 Total: 45.50 kcal Atomic # 16 Polarization: -12.57 SS G_CDS: -1.10 Total: -13.67 kcal Total: -61.27 4.28 -56.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037685569.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.548 kcal (2) G-P(sol) polarization free energy of solvation -61.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds