Wall clock time and date at job start Mon Mar 30 2020 02:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99282 * 2 1 4 4 H 1.48496 * 109.47023 * 269.99729 * 3 2 1 5 5 H 1.48497 * 109.47480 * 29.99685 * 3 2 1 6 6 H 1.48503 * 109.46812 * 150.00045 * 3 2 1 7 7 C 1.37874 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99332 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00255 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47636 * 184.65130 * 9 7 2 11 11 C 1.46899 * 111.00544 * 162.91440 * 10 9 7 12 12 C 1.52996 * 109.47253 * 190.00255 * 11 10 9 13 13 H 1.09008 * 109.47325 * 295.00261 * 12 11 10 14 14 N 1.46907 * 109.47472 * 54.99691 * 12 11 10 15 15 C 1.50701 * 109.47410 * 175.00035 * 12 11 10 16 16 O 1.20829 * 119.99898 * 260.00167 * 15 12 11 17 17 O 1.34229 * 120.00024 * 79.99620 * 15 12 11 18 18 C 1.46901 * 111.00104 * 286.87059 * 10 9 7 19 19 C 1.53003 * 117.49835 * 3.31459 * 18 10 9 20 20 C 1.53002 * 117.49969 * 294.66005 * 18 10 9 21 21 H 0.96993 * 120.00442 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47253 * 64.65284 * 9 7 2 23 23 H 1.09003 * 109.47272 * 304.65449 * 9 7 2 24 24 H 1.09004 * 109.46531 * 309.99888 * 11 10 9 25 25 H 1.08994 * 109.47192 * 70.00166 * 11 10 9 26 26 H 1.00894 * 110.99894 * 296.05079 * 14 12 11 27 27 H 1.00899 * 110.99345 * 59.99917 * 14 12 11 28 28 H 0.96696 * 116.99523 * 180.02562 * 17 15 12 29 29 H 1.09003 * 115.55350 * 148.98319 * 18 10 9 30 30 H 1.09004 * 117.49692 * 0.02562 * 19 18 10 31 31 H 1.09005 * 117.49982 * 145.01897 * 19 18 10 32 32 H 1.08999 * 117.50033 * 214.98191 * 20 18 10 33 33 H 1.09006 * 117.49256 * 359.97103 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2513 -2.4991 0.0005 10 7 2.2019 -3.6133 0.1135 11 6 1.5191 -4.8488 0.5199 12 6 2.5592 -5.9156 0.8677 13 1 3.1232 -6.1787 -0.0272 14 7 3.4768 -5.3907 1.8878 15 6 1.8630 -7.1410 1.4012 16 8 1.8123 -7.3366 2.5924 17 8 1.2992 -8.0153 0.5529 18 6 2.9374 -3.8072 -1.1433 19 6 2.6677 -2.8186 -2.2795 20 6 2.1367 -4.2514 -2.3691 21 1 -0.4850 0.8399 -0.0004 22 1 0.6890 -2.5941 -0.9284 23 1 0.5632 -2.5215 0.8456 24 1 0.8969 -4.6498 1.3925 25 1 0.8937 -5.2045 -0.2989 26 1 4.0033 -4.6070 1.5318 27 1 2.9778 -5.1392 2.7280 28 1 0.8638 -8.7860 0.9421 29 1 3.9527 -4.1900 -1.0396 30 1 1.9449 -2.0240 -2.0942 31 1 3.5056 -2.5512 -2.9234 32 1 2.6254 -4.9262 -3.0720 33 1 1.0643 -4.4002 -2.2428 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083832659.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:48 Heat of formation + Delta-G solvation = -55.381325 kcal Electronic energy + Delta-G solvation = -16378.180027 eV Core-core repulsion = 13632.950301 eV Total energy + Delta-G solvation = -2745.229727 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.25073 -38.51097 -36.15249 -34.81925 -33.05491 -31.62041 -28.22886 -26.55075 -23.73710 -22.88131 -21.58234 -20.62334 -18.86644 -18.15922 -16.90965 -16.42842 -16.06067 -15.43440 -14.75286 -14.55426 -14.14661 -13.84914 -13.48417 -13.26033 -12.57903 -12.24685 -11.92612 -11.52928 -11.44902 -11.07533 -10.89435 -10.73523 -10.41614 -10.32246 -10.05474 -9.88233 -9.45951 -9.34920 -8.53752 -8.50563 -7.45607 -6.10455 -4.10947 2.29418 3.05352 3.27523 3.34816 3.38810 4.32444 4.42994 4.65332 5.04907 5.20122 5.24739 5.29569 5.37425 5.53320 5.59832 5.66858 5.93334 6.05669 6.14674 6.46420 6.53320 6.60036 6.97543 7.06510 7.25115 7.30910 7.69826 7.74265 7.94001 7.99020 8.03170 8.37307 8.96149 9.52071 10.99845 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.035294 B = 0.007034 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.136820 B = 3979.682844 C = 4251.127877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.498 4.498 8 H 0.066 0.934 9 C 0.189 3.811 10 N -0.502 5.502 11 C 0.027 3.973 12 C 0.110 3.890 13 H 0.110 0.890 14 N -0.822 5.822 15 C 0.487 3.513 16 O -0.509 6.509 17 O -0.518 6.518 18 C 0.026 3.974 19 C -0.168 4.168 20 C -0.229 4.229 21 H 0.262 0.738 22 H -0.001 1.001 23 H 0.030 0.970 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.367 0.633 27 H 0.348 0.652 28 H 0.406 0.594 29 H 0.107 0.893 30 H 0.134 0.866 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 -10.762 -2.087 11.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.537 4.537 8 H 0.084 0.916 9 C 0.064 3.936 10 N -0.225 5.225 11 C -0.103 4.103 12 C -0.004 4.004 13 H 0.128 0.872 14 N -0.356 5.356 15 C 0.328 3.672 16 O -0.396 6.396 17 O -0.329 6.329 18 C -0.083 4.083 19 C -0.205 4.205 20 C -0.268 4.268 21 H 0.071 0.929 22 H 0.017 0.983 23 H 0.049 0.951 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.184 0.816 27 H 0.161 0.839 28 H 0.264 0.736 29 H 0.125 0.875 30 H 0.152 0.848 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.058 -10.931 -1.559 11.764 hybrid contribution -1.134 1.060 -0.495 1.629 sum 2.924 -9.871 -2.053 10.498 Atomic orbital electron populations 1.69951 1.06070 1.26926 1.50862 1.24984 0.94839 0.99324 0.95537 0.86496 0.79819 0.83065 0.78062 1.20723 1.21355 1.19743 1.21071 0.93636 0.89354 1.49626 0.91613 1.19871 0.90198 0.87247 0.96280 1.62154 1.29419 1.03303 1.27665 1.22710 0.95120 0.91618 1.00861 1.20864 0.94073 0.88932 0.96536 0.87189 1.58808 1.27990 1.41901 1.06920 1.23550 0.75190 0.83902 0.84570 1.90681 1.55992 1.75301 1.17619 1.84561 1.67952 1.36295 1.44066 1.22618 0.97386 1.04122 0.84184 1.23534 1.03980 0.93574 0.99419 1.23348 1.00277 0.99689 1.03463 0.92850 0.98348 0.95146 0.90796 0.94007 0.81646 0.83856 0.73579 0.87499 0.84838 0.89968 0.89843 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 13.29 55.43 0.74 -24.86 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.50 -12.96 6.86 -34.45 -0.24 -13.20 16 8 H 0.07 1.71 7.80 -52.49 -0.41 1.31 16 9 C 0.19 4.52 4.27 -4.98 -0.02 4.50 16 10 N -0.50 -9.64 3.91 -228.09 -0.89 -10.53 16 11 C 0.03 0.46 4.49 -3.83 -0.02 0.44 16 12 C 0.11 1.61 3.19 -68.86 -0.22 1.39 16 13 H 0.11 1.51 7.54 -51.92 -0.39 1.12 16 14 N -0.82 -12.26 8.93 -5.65 -0.05 -12.31 16 15 C 0.49 7.05 7.58 36.01 0.27 7.33 16 16 O -0.51 -8.67 17.01 -18.75 -0.32 -8.99 16 17 O -0.52 -5.92 13.42 -39.25 -0.53 -6.45 16 18 C 0.03 0.46 5.10 -67.71 -0.35 0.11 16 19 C -0.17 -3.10 8.87 -26.70 -0.24 -3.34 16 20 C -0.23 -3.72 9.27 -26.70 -0.25 -3.97 16 21 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 22 H 0.00 -0.03 6.03 -51.93 -0.31 -0.34 16 23 H 0.03 0.81 7.79 -51.93 -0.40 0.40 16 24 H 0.07 1.32 7.85 -51.93 -0.41 0.92 16 25 H 0.04 0.70 6.84 -51.93 -0.36 0.35 16 26 H 0.37 5.49 8.38 -39.29 -0.33 5.16 16 27 H 0.35 5.42 8.58 -39.29 -0.34 5.08 16 28 H 0.41 2.77 9.10 45.56 0.41 3.19 16 29 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 30 H 0.13 2.99 4.91 -51.93 -0.25 2.73 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.49 7.14 -51.93 -0.37 1.12 16 LS Contribution 277.21 15.07 4.18 4.18 Total: -1.00 -29.37 277.21 -6.60 -35.97 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -3.56 Total: 12.46 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.15 Total: -5.36 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.20 Total: -47.70 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.85 Total: -15.44 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.37 -6.60 -35.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083832659.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.408 kcal (2) G-P(sol) polarization free energy of solvation -29.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds