Wall clock time and date at job start Mon Mar 30 2020 02:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99282 * 2 1 4 4 H 1.48496 * 109.47023 * 269.99729 * 3 2 1 5 5 H 1.48497 * 109.47480 * 29.99685 * 3 2 1 6 6 H 1.48503 * 109.46812 * 150.00045 * 3 2 1 7 7 C 1.37874 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99332 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00255 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47636 * 184.65130 * 9 7 2 11 11 C 1.46899 * 111.00544 * 162.91440 * 10 9 7 12 12 C 1.52996 * 109.47253 * 190.00255 * 11 10 9 13 13 H 1.09008 * 109.47325 * 295.00261 * 12 11 10 14 14 N 1.46907 * 109.47472 * 54.99691 * 12 11 10 15 15 C 1.50701 * 109.47410 * 175.00035 * 12 11 10 16 16 O 1.20829 * 119.99898 * 260.00167 * 15 12 11 17 17 O 1.34229 * 120.00024 * 79.99620 * 15 12 11 18 18 C 1.46901 * 111.00104 * 286.87059 * 10 9 7 19 19 C 1.53003 * 117.49835 * 3.31459 * 18 10 9 20 20 C 1.53002 * 117.49969 * 294.66005 * 18 10 9 21 21 H 0.96993 * 120.00442 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47253 * 64.65284 * 9 7 2 23 23 H 1.09003 * 109.47272 * 304.65449 * 9 7 2 24 24 H 1.09004 * 109.46531 * 309.99888 * 11 10 9 25 25 H 1.08994 * 109.47192 * 70.00166 * 11 10 9 26 26 H 1.00894 * 110.99894 * 296.05079 * 14 12 11 27 27 H 1.00899 * 110.99345 * 59.99917 * 14 12 11 28 28 H 0.96696 * 116.99523 * 180.02562 * 17 15 12 29 29 H 1.09003 * 115.55350 * 148.98319 * 18 10 9 30 30 H 1.09004 * 117.49692 * 0.02562 * 19 18 10 31 31 H 1.09005 * 117.49982 * 145.01897 * 19 18 10 32 32 H 1.08999 * 117.50033 * 214.98191 * 20 18 10 33 33 H 1.09006 * 117.49256 * 359.97103 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2513 -2.4991 0.0005 10 7 2.2019 -3.6133 0.1135 11 6 1.5191 -4.8488 0.5199 12 6 2.5592 -5.9156 0.8677 13 1 3.1232 -6.1787 -0.0272 14 7 3.4768 -5.3907 1.8878 15 6 1.8630 -7.1410 1.4012 16 8 1.8123 -7.3366 2.5924 17 8 1.2992 -8.0153 0.5529 18 6 2.9374 -3.8072 -1.1433 19 6 2.6677 -2.8186 -2.2795 20 6 2.1367 -4.2514 -2.3691 21 1 -0.4850 0.8399 -0.0004 22 1 0.6890 -2.5941 -0.9284 23 1 0.5632 -2.5215 0.8456 24 1 0.8969 -4.6498 1.3925 25 1 0.8937 -5.2045 -0.2989 26 1 4.0033 -4.6070 1.5318 27 1 2.9778 -5.1392 2.7280 28 1 0.8638 -8.7860 0.9421 29 1 3.9527 -4.1900 -1.0396 30 1 1.9449 -2.0240 -2.0942 31 1 3.5056 -2.5512 -2.9234 32 1 2.6254 -4.9262 -3.0720 33 1 1.0643 -4.4002 -2.2428 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083832659.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:48 Heat of formation + Delta-G solvation = -78.475190 kcal Electronic energy + Delta-G solvation = -16379.181452 eV Core-core repulsion = 13632.950301 eV Total energy + Delta-G solvation = -2746.231152 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.40882 -39.97322 -37.21851 -36.10517 -34.99101 -33.21062 -29.82885 -28.12193 -25.12012 -24.70175 -22.96370 -21.85245 -20.34177 -19.28305 -18.40218 -18.07302 -17.59146 -16.67638 -16.56755 -15.78646 -15.53503 -15.29372 -14.90164 -14.60972 -14.12198 -13.83113 -13.41562 -13.18579 -12.76524 -12.62912 -12.56414 -12.41956 -12.00566 -11.75299 -11.60012 -11.45957 -11.28851 -10.84794 -10.58930 -9.76799 -9.04211 -8.17189 -6.23659 1.14059 1.42997 1.44420 1.55071 2.01414 2.42399 2.99449 3.14334 3.22310 3.76470 3.91068 4.04160 4.15561 4.18597 4.27946 4.35089 4.59861 4.70091 4.86321 5.02842 5.10324 5.17386 5.32319 5.58424 5.62208 5.68848 6.02126 6.09972 6.31174 6.51967 6.52742 6.89741 7.00578 7.43385 8.93351 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.035294 B = 0.007034 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.136820 B = 3979.682844 C = 4251.127877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.001 3.999 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.497 4.497 8 H 0.066 0.934 9 C 0.207 3.793 10 N -0.503 5.503 11 C 0.033 3.967 12 C 0.118 3.882 13 H 0.129 0.871 14 N -0.820 5.820 15 C 0.494 3.506 16 O -0.538 6.538 17 O -0.508 6.508 18 C 0.023 3.977 19 C -0.186 4.186 20 C -0.205 4.205 21 H 0.262 0.738 22 H -0.023 1.023 23 H -0.004 1.004 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.367 0.633 27 H 0.343 0.657 28 H 0.428 0.572 29 H 0.137 0.863 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.008 -11.816 -2.876 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.535 4.535 8 H 0.084 0.916 9 C 0.081 3.919 10 N -0.226 5.226 11 C -0.097 4.097 12 C 0.004 3.996 13 H 0.147 0.853 14 N -0.353 5.353 15 C 0.336 3.664 16 O -0.428 6.428 17 O -0.321 6.321 18 C -0.086 4.086 19 C -0.223 4.223 20 C -0.244 4.244 21 H 0.070 0.930 22 H -0.006 1.006 23 H 0.014 0.986 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.184 0.816 27 H 0.156 0.844 28 H 0.290 0.710 29 H 0.155 0.845 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.728 -12.025 -2.364 13.528 hybrid contribution -1.689 1.292 -0.295 2.147 sum 4.039 -10.734 -2.659 11.773 Atomic orbital electron populations 1.70078 1.07664 1.27625 1.52479 1.25802 0.95548 1.02844 0.95433 0.85479 0.78627 0.78856 0.78257 1.19979 1.21527 1.18904 1.21303 0.93603 0.90264 1.48330 0.91610 1.19457 0.90125 0.88787 0.93570 1.62013 1.28211 1.03167 1.29205 1.22659 0.95711 0.91289 1.00081 1.20798 0.93324 0.88320 0.97122 0.85330 1.58834 1.27816 1.41831 1.06781 1.23376 0.74799 0.84096 0.84171 1.90681 1.57152 1.76088 1.18832 1.84499 1.67442 1.36828 1.43343 1.22843 0.98510 1.03942 0.83270 1.23378 1.04179 0.93584 1.01189 1.23349 0.99512 0.98495 1.03082 0.92972 1.00554 0.98615 0.92614 0.93823 0.81646 0.84400 0.70993 0.84522 0.89269 0.87753 0.86309 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.91 13.29 21.45 0.28 -54.63 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 7 C -0.50 -26.20 6.86 25.60 0.18 -26.03 16 8 H 0.07 3.41 7.80 -2.91 -0.02 3.39 16 9 C 0.21 10.21 4.27 85.56 0.37 10.57 16 10 N -0.50 -19.10 3.91 -875.54 -3.42 -22.52 16 11 C 0.03 1.09 4.49 86.30 0.39 1.48 16 12 C 0.12 3.22 3.19 44.17 0.14 3.36 16 13 H 0.13 3.07 7.54 -2.38 -0.02 3.05 16 14 N -0.82 -23.16 8.93 -171.79 -1.53 -24.69 16 15 C 0.49 13.32 7.58 71.24 0.54 13.86 16 16 O -0.54 -17.63 17.01 21.95 0.37 -17.26 16 17 O -0.51 -10.17 13.42 -51.40 -0.69 -10.86 16 18 C 0.02 0.75 5.10 44.92 0.23 0.98 16 19 C -0.19 -6.64 8.87 30.62 0.27 -6.37 16 20 C -0.21 -6.20 9.27 30.62 0.28 -5.92 16 21 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 22 H -0.02 -1.23 6.03 -2.39 -0.01 -1.25 16 23 H 0.00 -0.24 7.79 -2.39 -0.02 -0.26 16 24 H 0.06 2.03 7.85 -2.39 -0.02 2.01 16 25 H 0.04 1.43 6.84 -2.39 -0.02 1.41 16 26 H 0.37 10.30 8.38 -89.70 -0.75 9.55 16 27 H 0.34 10.45 8.58 -89.69 -0.77 9.68 16 28 H 0.43 4.58 9.10 -74.06 -0.67 3.91 16 29 H 0.14 3.72 8.14 -2.39 -0.02 3.70 16 30 H 0.09 4.07 4.91 -2.39 -0.01 4.05 16 31 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 32 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.07 2.34 7.14 -2.38 -0.02 2.32 16 Total: -1.00 -64.00 277.21 -1.14 -65.15 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -1.04 Total: 27.19 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 2.86 Total: -7.54 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -4.67 Total: -101.85 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.32 Total: -28.12 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -64.00 -1.14 -65.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083832659.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.327 kcal (2) G-P(sol) polarization free energy of solvation -64.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds