Wall clock time and date at job start Mon Mar 30 2020 03:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99823 * 2 1 4 4 H 1.48504 * 109.47065 * 269.99763 * 3 2 1 5 5 H 1.48505 * 109.47437 * 29.99806 * 3 2 1 6 6 H 1.48500 * 109.47479 * 149.99904 * 3 2 1 7 7 C 1.37874 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00301 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99649 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46964 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47245 * 180.02562 * 10 9 7 12 12 C 1.46956 * 111.00208 * 75.67724 * 11 10 9 13 13 C 1.53054 * 109.36655 * 183.19058 * 12 11 10 14 14 N 1.46961 * 109.36248 * 301.60095 * 13 12 11 15 15 C 1.46956 * 110.88212 * 59.31820 * 14 13 12 16 16 C 1.46961 * 110.99955 * 199.48017 * 11 10 9 17 17 H 1.08998 * 109.48632 * 296.77136 * 16 11 10 18 18 C 1.50694 * 109.49380 * 56.84372 * 16 11 10 19 19 O 1.20826 * 119.99825 * 28.08543 * 18 16 11 20 20 O 1.34226 * 120.00312 * 208.09742 * 18 16 11 21 21 H 0.97005 * 120.00434 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47319 * 60.00606 * 9 7 2 23 23 H 1.08996 * 109.48044 * 300.00669 * 9 7 2 24 24 H 1.08997 * 109.47003 * 60.00535 * 10 9 7 25 25 H 1.09000 * 109.47152 * 300.00294 * 10 9 7 26 26 H 1.08999 * 109.48456 * 303.15618 * 12 11 10 27 27 H 1.08998 * 109.48792 * 63.19812 * 12 11 10 28 28 H 1.09000 * 109.49125 * 61.56199 * 13 12 11 29 29 H 1.08995 * 109.48965 * 181.61125 * 13 12 11 30 30 H 1.00897 * 110.99866 * 183.19375 * 14 13 12 31 31 H 1.08991 * 109.48514 * 60.65158 * 15 14 13 32 32 H 1.09001 * 109.48334 * 180.69298 * 15 14 13 33 33 H 0.96700 * 117.00161 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0215 -2.6364 0.0001 11 7 5.4905 -2.6364 0.0001 12 6 6.0171 -2.2969 1.3294 13 6 7.5450 -2.2296 1.2680 14 7 8.0717 -3.5231 0.8106 15 6 7.5450 -3.8626 -0.5187 16 6 6.0172 -3.9299 -0.4573 17 1 5.7154 -4.7122 0.2391 18 6 5.4721 -4.2385 -1.8279 19 8 5.1695 -3.3380 -2.5745 20 8 5.3226 -5.5137 -2.2193 21 1 -0.4851 0.8400 0.0004 22 1 3.8752 -0.6796 0.8895 23 1 3.8746 -0.6806 -0.8904 24 1 3.6580 -3.1504 -0.8897 25 1 3.6585 -3.1501 0.8903 26 1 5.6228 -1.3296 1.6405 27 1 5.7149 -3.0604 2.0462 28 1 7.8469 -1.4473 0.5716 29 1 7.9392 -2.0061 2.2593 30 1 9.0806 -3.5231 0.8107 31 1 7.8470 -3.0989 -1.2353 32 1 7.9397 -4.8298 -0.8299 33 1 4.9689 -5.6619 -3.1070 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084024135.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:02 Heat of formation + Delta-G solvation = -78.316947 kcal Electronic energy + Delta-G solvation = -16483.327131 eV Core-core repulsion = 13737.102842 eV Total energy + Delta-G solvation = -2746.224290 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.49586 -38.44227 -35.95190 -34.87808 -32.75290 -31.40596 -30.07022 -26.48016 -24.70681 -23.47771 -21.71150 -20.23305 -19.52996 -18.02058 -17.28640 -16.56675 -15.80575 -15.77288 -14.78353 -14.48809 -14.32032 -14.07971 -13.66763 -13.49725 -12.86423 -12.54746 -12.46911 -11.74053 -11.46339 -11.40654 -11.23219 -10.94317 -10.83400 -10.23531 -10.10238 -9.73592 -9.68979 -9.17899 -8.68056 -8.49261 -8.01531 -6.01105 -3.98973 2.33430 2.96726 3.36291 3.42368 3.47317 4.03660 4.21555 4.49734 4.75986 5.02828 5.17593 5.21180 5.33857 5.39769 5.48119 5.57648 5.70405 5.93343 6.04536 6.08876 6.26871 6.58702 6.72814 6.77230 7.00432 7.16385 7.20769 7.47523 7.60038 7.85100 8.07571 8.55782 9.02271 9.61384 11.12315 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.028663 B = 0.008141 C = 0.006893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.620191 B = 3438.586998 C = 4060.853209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.068 3.932 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.069 0.931 9 C 0.000 4.000 10 C 0.067 3.933 11 N -0.526 5.526 12 C 0.059 3.941 13 C 0.055 3.945 14 N -0.688 5.688 15 C 0.072 3.928 16 C 0.097 3.903 17 H 0.078 0.922 18 C 0.478 3.522 19 O -0.480 6.480 20 O -0.522 6.522 21 H 0.263 0.737 22 H 0.015 0.985 23 H 0.023 0.977 24 H 0.065 0.935 25 H 0.032 0.968 26 H 0.093 0.907 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.346 0.654 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.685 -8.524 0.271 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.087 0.913 9 C -0.038 4.038 10 C -0.059 4.059 11 N -0.253 5.253 12 C -0.069 4.069 13 C -0.075 4.075 14 N -0.319 5.319 15 C -0.058 4.058 16 C -0.013 4.013 17 H 0.095 0.905 18 C 0.317 3.683 19 O -0.364 6.364 20 O -0.334 6.334 21 H 0.072 0.928 22 H 0.033 0.967 23 H 0.041 0.959 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.111 0.889 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.164 0.836 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 16.278 -8.083 0.457 18.180 hybrid contribution 0.205 0.786 -0.672 1.055 sum 16.483 -7.297 -0.215 18.027 Atomic orbital electron populations 1.69915 1.06303 1.26878 1.51263 1.24977 0.94716 0.99166 0.94467 0.86735 0.80256 0.83409 0.78622 1.20242 1.21512 1.18951 1.21063 0.89390 0.94491 1.50941 0.91250 1.19475 0.96278 0.91182 0.96856 1.22266 0.82434 1.01367 0.99856 1.62136 1.10842 1.26089 1.26221 1.22221 0.93557 1.02175 0.88960 1.22107 0.95344 0.89659 1.00352 1.60452 1.13114 1.32544 1.25822 1.21821 0.91735 1.01405 0.90830 1.21125 0.95542 0.94166 0.90479 0.90472 1.23175 0.75370 0.80011 0.89742 1.90785 1.44474 1.46908 1.54233 1.84515 1.78671 1.30353 1.39871 0.92756 0.96674 0.95903 0.91664 0.94944 0.88899 0.93811 0.93868 0.90005 0.83568 0.93449 0.89659 0.73262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.55 13.96 55.43 0.77 -27.78 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -15.40 9.66 -34.44 -0.33 -15.73 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.00 0.00 4.15 -27.88 -0.12 -0.12 16 10 C 0.07 1.44 4.56 -3.82 -0.02 1.42 16 11 N -0.53 -9.46 4.20 -227.88 -0.96 -10.42 16 12 C 0.06 0.90 5.43 -3.77 -0.02 0.88 16 13 C 0.05 0.66 6.72 -3.76 -0.03 0.63 16 14 N -0.69 -7.54 6.90 -113.63 -0.78 -8.32 16 15 C 0.07 0.87 5.98 -3.77 -0.02 0.85 16 16 C 0.10 1.47 2.46 -68.81 -0.17 1.30 16 17 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 18 C 0.48 7.56 6.17 36.00 0.22 7.78 16 19 O -0.48 -9.49 16.35 -18.75 -0.31 -9.79 16 20 O -0.52 -6.31 13.42 -39.25 -0.53 -6.84 16 21 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 22 H 0.02 0.37 5.93 -51.93 -0.31 0.06 16 23 H 0.02 0.60 7.57 -51.93 -0.39 0.21 16 24 H 0.06 1.48 5.89 -51.93 -0.31 1.17 16 25 H 0.03 0.68 8.00 -51.93 -0.42 0.27 16 26 H 0.09 1.51 6.79 -51.93 -0.35 1.16 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.35 2.86 8.90 -39.29 -0.35 2.51 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.41 3.23 9.10 45.56 0.41 3.65 16 LS Contribution 270.99 15.07 4.08 4.08 Total: -1.00 -34.73 270.99 -6.80 -41.52 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -3.83 Total: 0.71 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -0.58 Total: -1.04 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.97 Total: -46.52 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.83 Total: -16.63 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -34.73 -6.80 -41.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084024135.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.794 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds