Wall clock time and date at job start Mon Mar 30 2020 03:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99823 * 2 1 4 4 H 1.48504 * 109.47065 * 269.99763 * 3 2 1 5 5 H 1.48505 * 109.47437 * 29.99806 * 3 2 1 6 6 H 1.48500 * 109.47479 * 149.99904 * 3 2 1 7 7 C 1.37874 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00301 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99649 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46964 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47245 * 180.02562 * 10 9 7 12 12 C 1.46956 * 111.00208 * 75.67724 * 11 10 9 13 13 C 1.53054 * 109.36655 * 183.19058 * 12 11 10 14 14 N 1.46961 * 109.36248 * 301.60095 * 13 12 11 15 15 C 1.46956 * 110.88212 * 59.31820 * 14 13 12 16 16 C 1.46961 * 110.99955 * 199.48017 * 11 10 9 17 17 H 1.08998 * 109.48632 * 296.77136 * 16 11 10 18 18 C 1.50694 * 109.49380 * 56.84372 * 16 11 10 19 19 O 1.20826 * 119.99825 * 28.08543 * 18 16 11 20 20 O 1.34226 * 120.00312 * 208.09742 * 18 16 11 21 21 H 0.97005 * 120.00434 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47319 * 60.00606 * 9 7 2 23 23 H 1.08996 * 109.48044 * 300.00669 * 9 7 2 24 24 H 1.08997 * 109.47003 * 60.00535 * 10 9 7 25 25 H 1.09000 * 109.47152 * 300.00294 * 10 9 7 26 26 H 1.08999 * 109.48456 * 303.15618 * 12 11 10 27 27 H 1.08998 * 109.48792 * 63.19812 * 12 11 10 28 28 H 1.09000 * 109.49125 * 61.56199 * 13 12 11 29 29 H 1.08995 * 109.48965 * 181.61125 * 13 12 11 30 30 H 1.00897 * 110.99866 * 183.19375 * 14 13 12 31 31 H 1.08991 * 109.48514 * 60.65158 * 15 14 13 32 32 H 1.09001 * 109.48334 * 180.69298 * 15 14 13 33 33 H 0.96700 * 117.00161 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0215 -2.6364 0.0001 11 7 5.4905 -2.6364 0.0001 12 6 6.0171 -2.2969 1.3294 13 6 7.5450 -2.2296 1.2680 14 7 8.0717 -3.5231 0.8106 15 6 7.5450 -3.8626 -0.5187 16 6 6.0172 -3.9299 -0.4573 17 1 5.7154 -4.7122 0.2391 18 6 5.4721 -4.2385 -1.8279 19 8 5.1695 -3.3380 -2.5745 20 8 5.3226 -5.5137 -2.2193 21 1 -0.4851 0.8400 0.0004 22 1 3.8752 -0.6796 0.8895 23 1 3.8746 -0.6806 -0.8904 24 1 3.6580 -3.1504 -0.8897 25 1 3.6585 -3.1501 0.8903 26 1 5.6228 -1.3296 1.6405 27 1 5.7149 -3.0604 2.0462 28 1 7.8469 -1.4473 0.5716 29 1 7.9392 -2.0061 2.2593 30 1 9.0806 -3.5231 0.8107 31 1 7.8470 -3.0989 -1.2353 32 1 7.9397 -4.8298 -0.8299 33 1 4.9689 -5.6619 -3.1070 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084024135.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:02 Heat of formation + Delta-G solvation = -107.932575 kcal Electronic energy + Delta-G solvation = -16484.611361 eV Core-core repulsion = 13737.102842 eV Total energy + Delta-G solvation = -2747.508520 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.72774 -39.61945 -37.13186 -36.33916 -34.77567 -32.63679 -31.84144 -28.01926 -25.91223 -25.13175 -22.83394 -22.09567 -20.70951 -19.22675 -19.08307 -18.12199 -17.06269 -16.87250 -16.41541 -15.91571 -15.60681 -15.48795 -15.08903 -14.72484 -14.66293 -14.24225 -13.71607 -13.43831 -13.04807 -12.65086 -12.61222 -12.35306 -12.21270 -11.96314 -11.76468 -11.57340 -11.48936 -11.29691 -10.79471 -9.61999 -9.35910 -8.33351 -6.37916 1.10673 1.33750 1.35587 1.48140 1.87904 2.33869 2.77657 3.02037 3.27581 3.70319 3.92494 4.00770 4.15118 4.32616 4.36555 4.42949 4.48373 4.66941 4.73652 4.85629 4.93779 5.00986 5.16259 5.38699 5.55719 5.58507 5.76371 5.90667 6.02195 6.22903 6.46146 6.68174 6.97406 7.26689 8.83404 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.028663 B = 0.008141 C = 0.006893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.620191 B = 3438.586998 C = 4060.853209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.245 1.245 7 C -0.536 4.536 8 H 0.030 0.970 9 C 0.010 3.990 10 C 0.081 3.919 11 N -0.538 5.538 12 C 0.053 3.947 13 C 0.062 3.938 14 N -0.683 5.683 15 C 0.080 3.920 16 C 0.092 3.908 17 H 0.085 0.915 18 C 0.483 3.517 19 O -0.528 6.528 20 O -0.508 6.508 21 H 0.268 0.732 22 H 0.025 0.975 23 H 0.010 0.990 24 H 0.046 0.954 25 H 0.030 0.970 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.038 0.962 29 H 0.109 0.891 30 H 0.366 0.634 31 H 0.038 0.962 32 H 0.113 0.887 33 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.404 -8.499 0.889 21.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.168 1.168 7 C -0.574 4.574 8 H 0.048 0.952 9 C -0.028 4.028 10 C -0.046 4.046 11 N -0.265 5.265 12 C -0.074 4.074 13 C -0.067 4.067 14 N -0.317 5.317 15 C -0.051 4.051 16 C -0.018 4.018 17 H 0.103 0.897 18 C 0.324 3.676 19 O -0.416 6.416 20 O -0.321 6.321 21 H 0.077 0.923 22 H 0.044 0.956 23 H 0.029 0.971 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.128 0.872 30 H 0.187 0.813 31 H 0.057 0.943 32 H 0.131 0.869 33 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 19.034 -8.108 1.080 20.717 hybrid contribution -0.697 0.624 -0.883 1.287 sum 18.337 -7.483 0.196 19.806 Atomic orbital electron populations 1.70055 1.08205 1.28293 1.52353 1.25963 0.95645 1.03459 0.93832 0.85626 0.79611 0.78151 0.79050 1.19821 1.20304 1.16817 1.21376 0.91813 0.93240 1.50974 0.95175 1.19303 0.93317 0.93769 0.96443 1.21874 0.85346 0.98549 0.98850 1.62003 1.08181 1.28310 1.28005 1.22337 0.96002 1.01482 0.87587 1.22047 0.92725 0.90042 1.01883 1.60415 1.14597 1.31767 1.24944 1.21810 0.89250 1.02717 0.91286 1.21316 0.97637 0.92805 0.90005 0.89712 1.23376 0.74196 0.80326 0.89669 1.90771 1.46772 1.48426 1.55615 1.84467 1.78083 1.28199 1.41400 0.92325 0.95638 0.97133 0.93500 0.95188 0.90181 0.93522 0.94386 0.87245 0.81279 0.94330 0.86871 0.71020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.26 13.96 21.45 0.30 -60.96 16 2 C 0.01 0.49 5.47 84.65 0.46 0.96 16 3 Si 0.95 46.41 27.47 68.60 1.88 48.29 16 4 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.24 -11.04 6.54 99.48 0.65 -10.39 16 7 C -0.54 -32.66 9.66 25.60 0.25 -32.42 16 8 H 0.03 2.00 7.99 -2.92 -0.02 1.98 16 9 C 0.01 0.48 4.15 29.85 0.12 0.61 16 10 C 0.08 3.53 4.56 86.30 0.39 3.93 16 11 N -0.54 -18.88 4.20 -874.88 -3.67 -22.55 16 12 C 0.05 1.54 5.43 86.31 0.47 2.01 16 13 C 0.06 1.31 6.72 86.31 0.58 1.89 16 14 N -0.68 -12.50 6.90 -513.43 -3.54 -16.04 16 15 C 0.08 1.68 5.98 86.31 0.52 2.20 16 16 C 0.09 2.64 2.46 44.17 0.11 2.75 16 17 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 18 C 0.48 14.86 6.17 71.23 0.44 15.30 16 19 O -0.53 -20.98 16.35 21.96 0.36 -20.62 16 20 O -0.51 -11.40 13.42 -51.37 -0.69 -12.09 16 21 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 22 H 0.03 1.24 5.93 -2.39 -0.01 1.22 16 23 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 24 H 0.05 2.18 5.89 -2.39 -0.01 2.17 16 25 H 0.03 1.29 8.00 -2.39 -0.02 1.27 16 26 H 0.08 2.49 6.79 -2.39 -0.02 2.48 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.37 4.51 8.90 -89.70 -0.80 3.71 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.43 6.07 9.10 -74.06 -0.67 5.39 16 Total: -1.00 -76.50 270.99 -2.42 -78.93 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -0.40 Total: 7.82 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 3.34 Total: -2.78 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -6.92 Total: -99.55 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.33 Total: -32.71 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.29 kcal Total: -76.50 -2.42 -78.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084024135.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.006 kcal (2) G-P(sol) polarization free energy of solvation -76.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds