Wall clock time and date at job start Mon Mar 30 2020 03:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00256 * 2 1 4 4 H 1.48508 * 109.46763 * 239.99625 * 3 2 1 5 5 H 1.48506 * 109.46865 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47267 * 119.99556 * 3 2 1 7 7 C 1.37879 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99922 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99969 * 179.72251 * 10 9 7 12 12 O 1.21281 * 120.00220 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.52992 * 109.47274 * 180.02562 * 13 11 10 15 15 H 1.09005 * 109.50754 * 304.99915 * 14 13 11 16 16 C 1.53093 * 109.50583 * 184.91424 * 14 13 11 17 17 O 1.43024 * 109.25592 * 183.25844 * 16 14 13 18 18 C 1.43012 * 113.77543 * 58.60389 * 17 16 14 19 19 C 1.53101 * 109.25813 * 301.35425 * 18 17 16 20 20 N 1.47007 * 109.25800 * 56.84723 * 19 18 17 21 21 H 0.97005 * 119.99648 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47545 * 60.00113 * 9 7 2 23 23 H 1.08998 * 109.47669 * 300.00056 * 9 7 2 24 24 H 0.97005 * 119.99811 * 0.02562 * 10 9 7 25 25 H 1.09004 * 109.46762 * 300.00389 * 13 11 10 26 26 H 1.08998 * 109.46924 * 59.99727 * 13 11 10 27 27 H 1.08998 * 109.51008 * 303.14570 * 16 14 13 28 28 H 1.09004 * 109.51162 * 63.27982 * 16 14 13 29 29 H 1.08996 * 109.50915 * 181.42087 * 18 17 16 30 30 H 1.09001 * 109.50740 * 61.28614 * 18 17 16 31 31 H 1.09004 * 109.50311 * 296.91400 * 19 18 17 32 32 H 1.09002 * 109.50998 * 176.78298 * 19 18 17 33 33 H 1.00899 * 111.00118 * 177.61407 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8833 0.0062 12 8 0.5612 -5.1049 0.0108 13 6 2.7329 -6.0289 0.0068 14 6 1.9679 -7.3538 0.0130 15 1 1.2780 -7.3718 0.8567 16 6 2.9577 -8.5150 0.1372 17 8 2.2443 -9.7526 0.0661 18 6 1.4987 -9.9196 -1.1428 19 6 0.4940 -8.7725 -1.2789 20 7 1.2132 -7.4909 -1.2412 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8902 24 1 3.1567 -3.4355 0.0009 25 1 3.3567 -5.9740 -0.8854 26 1 3.3625 -5.9682 0.8945 27 1 3.6811 -8.4654 -0.6767 28 1 3.4786 -8.4488 1.0925 29 1 0.9648 -10.8694 -1.1129 30 1 2.1791 -9.9104 -1.9943 31 1 -0.2194 -8.8139 -0.4558 32 1 -0.0370 -8.8641 -2.2265 33 1 0.5790 -6.7165 -1.3680 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087508486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:17 Heat of formation + Delta-G solvation = -119.842560 kcal Electronic energy + Delta-G solvation = -15834.150593 eV Core-core repulsion = 13086.125617 eV Total energy + Delta-G solvation = -2748.024976 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.03868 -39.81981 -36.33555 -35.63400 -34.38591 -33.43767 -30.10927 -28.45328 -27.12964 -24.88688 -23.61076 -21.53832 -21.07468 -18.95959 -17.93063 -17.54992 -17.04085 -16.78268 -16.75553 -16.11365 -15.66351 -15.63420 -15.20042 -14.73582 -14.33597 -14.03534 -13.92968 -13.29268 -12.92565 -12.79305 -12.63762 -12.32595 -12.22441 -12.15545 -11.59352 -11.51673 -10.89434 -10.79825 -10.59605 -9.85144 -9.49477 -8.29736 -6.46503 1.43206 1.47145 1.55351 1.76386 2.31886 2.57253 2.91268 3.05328 3.13097 3.75501 3.85348 4.09231 4.15953 4.25528 4.35350 4.44068 4.57977 4.69907 4.70579 4.85763 4.95230 5.08270 5.11518 5.23538 5.47809 5.68300 5.84221 5.93719 6.16389 6.20440 6.64774 6.90101 7.23157 7.49389 8.82225 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.073785 B = 0.004656 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.390941 B = 6012.836934 C = 6249.993819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.706 5.706 11 C 0.496 3.504 12 O -0.605 6.605 13 C -0.121 4.121 14 C 0.065 3.935 15 H 0.025 0.975 16 C 0.072 3.928 17 O -0.403 6.403 18 C 0.064 3.936 19 C 0.016 3.984 20 N -0.692 5.692 21 H 0.268 0.732 22 H -0.013 1.013 23 H -0.015 1.015 24 H 0.410 0.590 25 H 0.124 0.876 26 H 0.132 0.868 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.068 0.932 31 H 0.022 0.978 32 H 0.097 0.903 33 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.116 -15.582 -1.573 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.355 5.355 11 C 0.284 3.716 12 O -0.488 6.488 13 C -0.160 4.160 14 C -0.046 4.046 15 H 0.043 0.957 16 C -0.005 4.005 17 O -0.322 6.322 18 C -0.013 4.013 19 C -0.113 4.113 20 N -0.326 5.326 21 H 0.077 0.923 22 H 0.005 0.995 23 H 0.003 0.997 24 H 0.246 0.754 25 H 0.142 0.858 26 H 0.150 0.850 27 H 0.093 0.907 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.115 0.885 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.670 -15.970 -1.782 18.259 hybrid contribution -0.863 1.589 0.442 1.861 sum 7.808 -14.382 -1.340 16.419 Atomic orbital electron populations 1.70134 1.08322 1.28615 1.49983 1.26070 0.95749 1.03942 0.93816 0.85210 0.77910 0.76584 0.79534 1.18613 1.21182 1.18614 1.21611 0.94353 0.90627 1.52940 0.89734 1.18521 0.88750 0.84487 0.93956 1.46212 1.11226 1.05600 1.72494 1.21515 0.89893 0.85101 0.75080 1.90576 1.19658 1.85450 1.53139 1.21703 0.97453 0.89501 1.07386 1.21909 0.96098 0.95267 0.91314 0.95681 1.22818 0.92441 0.81000 1.04230 1.87941 1.65373 1.38143 1.40755 1.22810 0.93355 0.97910 0.87184 1.22692 0.96222 0.90617 1.01803 1.60845 1.31790 1.05274 1.34740 0.92279 0.99516 0.99672 0.75449 0.85806 0.85012 0.90668 0.86324 0.86609 0.91381 0.95988 0.88482 0.83363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.98 42.00 29.54 68.60 2.03 44.03 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.56 -30.11 9.28 25.60 0.24 -29.88 16 8 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.50 5.43 85.63 0.46 14.96 16 10 N -0.71 -28.98 5.55 -466.78 -2.59 -31.57 16 11 C 0.50 19.00 7.58 87.66 0.66 19.67 16 12 O -0.61 -28.80 14.17 -3.03 -0.04 -28.84 16 13 C -0.12 -2.99 5.38 29.85 0.16 -2.83 16 14 C 0.07 1.73 2.30 44.92 0.10 1.84 16 15 H 0.03 0.82 7.96 -2.38 -0.02 0.80 16 16 C 0.07 1.46 6.30 72.01 0.45 1.92 16 17 O -0.40 -9.51 10.82 -148.98 -1.61 -11.12 16 18 C 0.06 1.26 7.01 72.02 0.50 1.77 16 19 C 0.02 0.39 6.76 86.32 0.58 0.98 16 20 N -0.69 -19.93 6.56 -490.72 -3.22 -23.15 16 21 H 0.27 15.17 8.31 -92.70 -0.77 14.39 16 22 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 23 H -0.01 -0.91 8.14 -2.39 -0.02 -0.92 16 24 H 0.41 13.64 8.32 -92.70 -0.77 12.87 16 25 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.35 12.14 6.59 -89.69 -0.59 11.55 16 Total: -1.00 -71.47 276.94 -1.76 -73.23 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -0.25 Total: 24.27 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 3.63 Total: 9.10 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -5.52 Total: -110.67 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.66 Total: -39.96 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -71.47 -1.76 -73.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087508486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.613 kcal (2) G-P(sol) polarization free energy of solvation -71.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds