Wall clock time and date at job start Mon Mar 30 2020 03:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47127 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.22581 * 304.99725 * 5 4 3 7 7 C 1.52581 * 109.22937 * 64.39906 * 5 4 3 8 8 C 1.53113 * 109.94773 * 191.03840 * 7 5 4 9 9 S 1.81748 * 108.80802 * 296.91295 * 8 7 5 10 10 C 1.81745 * 102.22064 * 53.28662 * 9 8 7 11 11 H 1.08997 * 109.57473 * 66.54129 * 10 9 8 12 12 C 1.50702 * 109.57690 * 186.92775 * 10 9 8 13 13 H 1.07992 * 120.00290 * 119.35637 * 12 10 9 14 14 C 1.37881 * 119.99440 * 299.35580 * 12 10 9 15 15 N 1.31509 * 120.00766 * 0.02562 * 14 12 10 16 16 Si 1.86808 * 119.99248 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47360 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46628 * 120.00342 * 16 14 12 19 19 H 1.48495 * 109.46713 * 239.99977 * 16 14 12 20 20 C 1.52578 * 109.22738 * 185.59574 * 5 4 3 21 21 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47380 * 300.00763 * 1 2 3 23 23 H 1.09001 * 109.46997 * 60.00426 * 1 2 3 24 24 H 1.08996 * 109.47452 * 240.00000 * 2 1 3 25 25 H 1.09001 * 109.46997 * 119.99574 * 2 1 3 26 26 H 1.09001 * 109.47502 * 60.00153 * 3 2 1 27 27 H 1.09001 * 109.47289 * 299.99950 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 4 3 2 29 29 H 1.08993 * 109.46955 * 60.00011 * 4 3 2 30 30 H 1.09007 * 109.39166 * 311.14886 * 7 5 4 31 31 H 1.09001 * 109.38707 * 70.84709 * 7 5 4 32 32 H 1.09003 * 109.57503 * 177.12943 * 8 7 5 33 33 H 1.08993 * 109.71825 * 56.78612 * 8 7 5 34 34 H 0.96991 * 120.00403 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.38881 * 289.15028 * 20 5 4 36 36 H 1.09002 * 109.39207 * 48.95024 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0013 6 1 3.6435 3.4204 -0.8419 7 6 3.6601 3.5658 1.3006 8 6 3.9164 5.0725 1.2073 9 16 5.7016 5.3522 1.0128 10 6 6.1027 4.3002 -0.4139 11 1 5.6158 4.6937 -1.3061 12 6 7.5955 4.2756 -0.6193 13 1 8.1335 3.3411 -0.5598 14 6 8.2743 5.4463 -0.8834 15 7 7.6193 6.5844 -0.9554 16 14 10.1248 5.4159 -1.1373 17 1 10.6197 4.0221 -1.0055 18 1 10.4467 5.9289 -2.4931 19 1 10.7787 6.2725 -0.1157 20 6 5.5994 2.8808 -0.1385 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.9330 0.9288 0.8909 29 1 3.9337 0.9285 -0.8891 30 1 2.5985 3.3899 1.4746 31 1 4.2347 3.1509 2.1287 32 1 3.5675 5.5594 2.1180 33 1 3.3866 5.4831 0.3478 34 1 8.0970 7.4080 -1.1408 35 1 6.0467 2.5108 0.7841 36 1 5.8849 2.2304 -0.9653 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107929843.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:26 Heat of formation + Delta-G solvation = -48.784214 kcal Electronic energy + Delta-G solvation = -14125.289008 eV Core-core repulsion = 11926.638568 eV Total energy + Delta-G solvation = -2198.650440 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.124 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.65648 -34.72017 -33.19696 -30.35721 -30.14459 -26.58303 -24.29153 -22.56180 -21.53277 -20.40844 -19.48981 -16.64495 -15.53078 -15.28185 -14.67636 -13.97566 -13.87196 -13.68265 -13.16422 -12.75048 -12.53526 -12.25253 -12.11392 -12.05138 -11.27982 -11.10049 -11.05898 -10.99899 -10.89965 -10.57355 -10.38339 -10.33216 -10.05215 -9.77798 -9.53403 -9.08414 -8.52268 -8.16134 -6.26225 -5.81972 -4.18016 3.17138 3.33415 3.37071 3.40761 4.29547 4.39916 4.83278 4.95495 5.11661 5.25468 5.34771 5.44308 5.49470 5.58274 5.77446 5.79203 5.90557 5.95113 6.03778 6.07044 6.15002 6.19939 6.24548 6.40026 6.41404 6.52610 6.60269 6.64117 6.80328 6.92319 7.03605 7.46807 7.75775 8.11402 8.77170 9.39472 10.90224 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.045070 B = 0.006174 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.109652 B = 4533.809394 C = 4968.757955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.111 4.111 5 C -0.094 4.094 6 H 0.062 0.938 7 C -0.107 4.107 8 C -0.104 4.104 9 S -0.305 6.305 10 C 0.114 3.886 11 H 0.038 0.962 12 C -0.498 4.498 13 H 0.068 0.932 14 C 0.069 3.931 15 N -0.839 5.839 16 Si 0.896 3.104 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.281 1.281 20 C -0.103 4.103 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.264 0.736 35 H 0.059 0.941 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.002 -9.000 1.641 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.149 4.149 5 C -0.112 4.112 6 H 0.080 0.920 7 C -0.146 4.146 8 C -0.252 4.252 9 S -0.074 6.074 10 C -0.011 4.011 11 H 0.056 0.944 12 C -0.541 4.541 13 H 0.086 0.914 14 C -0.141 4.141 15 N -0.473 5.473 16 Si 0.723 3.277 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.142 4.142 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.393 -8.101 2.256 12.607 hybrid contribution 0.142 -0.513 -0.817 0.975 sum -9.252 -8.614 1.439 12.722 Atomic orbital electron populations 1.21781 0.96303 1.01170 1.01711 1.21546 0.95439 0.97503 1.01776 1.21708 0.96179 0.96045 1.02006 1.21634 0.94548 0.97056 1.01652 1.21167 0.97427 0.94962 0.97664 0.91968 1.21751 0.99970 0.94842 0.98027 1.23297 1.01370 0.97646 1.02921 1.87574 1.03152 1.68721 1.48001 1.20720 0.98480 0.90087 0.91804 0.94397 1.20937 0.90898 0.94318 1.47958 0.91353 1.25161 0.98958 0.95539 0.94420 1.70075 1.35675 0.98251 1.43330 0.86449 0.84889 0.78469 0.77855 1.19433 1.20764 1.20677 1.21831 0.92455 0.98809 1.01138 0.93128 0.92881 0.92868 0.92247 0.92243 0.91833 0.92280 0.92289 0.92237 0.92732 0.91733 0.90579 0.91993 0.92572 0.92230 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.13 -1.30 5.93 -26.73 -0.16 -1.45 16 3 C -0.12 -1.47 4.98 -26.73 -0.13 -1.60 16 4 C -0.11 -1.56 4.65 -26.73 -0.12 -1.68 16 5 C -0.09 -1.62 1.93 -91.05 -0.18 -1.79 16 6 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 7 C -0.11 -1.82 4.99 -26.89 -0.13 -1.95 16 8 C -0.10 -2.05 6.46 37.22 0.24 -1.81 16 9 S -0.30 -7.64 20.37 -107.50 -2.19 -9.83 16 10 C 0.11 2.88 2.44 -27.83 -0.07 2.81 16 11 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 12 C -0.50 -13.59 8.56 -34.44 -0.29 -13.89 16 13 H 0.07 1.82 7.75 -52.49 -0.41 1.41 16 14 C 0.07 1.90 5.28 -17.82 -0.09 1.81 16 15 N -0.84 -24.15 12.22 55.43 0.68 -23.48 16 16 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.10 -2.12 4.28 -26.90 -0.11 -2.24 16 21 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.76 6.31 -51.93 -0.33 0.44 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 30 H 0.05 0.80 6.05 -51.93 -0.31 0.48 16 31 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.06 1.25 8.05 -51.93 -0.42 0.84 16 36 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 LS Contribution 293.00 15.07 4.42 4.42 Total: -1.00 -28.44 293.00 -9.31 -37.75 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.50 Total: -2.01 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -0.69 Total: -22.82 kcal Atomic # 7 Polarization: -24.15 SS G_CDS: 0.68 Total: -23.48 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -7.64 SS G_CDS: -2.19 Total: -9.83 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.44 -9.31 -37.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929843.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.036 kcal (2) G-P(sol) polarization free energy of solvation -28.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds