Wall clock time and date at job start Mon Mar 30 2020 03:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00054 * 3 2 1 5 5 H 1.48500 * 109.47256 * 29.99968 * 3 2 1 6 6 H 1.48499 * 109.47161 * 149.99619 * 3 2 1 7 7 C 1.38948 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99855 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99944 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00037 * 179.97438 * 10 9 7 13 13 O 1.42905 * 109.46972 * 179.97438 * 12 10 9 14 14 C 1.42899 * 113.99778 * 179.97438 * 13 12 10 15 15 H 1.08998 * 110.43618 * 330.70057 * 14 13 12 16 16 C 1.54891 * 110.48420 * 93.24400 * 14 13 12 17 17 C 1.55035 * 102.68230 * 156.51797 * 16 14 13 18 18 C 1.54267 * 104.27887 * 322.23095 * 17 16 14 19 19 C 1.53874 * 106.59923 * 23.52196 * 18 17 16 20 20 H 1.09000 * 110.03183 * 240.71415 * 19 18 17 21 21 N 1.46903 * 110.07521 * 119.30455 * 19 18 17 22 22 H 0.97002 * 120.00016 * 0.02562 * 1 2 3 23 23 H 0.96996 * 120.00211 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.47103 * 59.99751 * 12 10 9 25 25 H 1.09000 * 109.47247 * 299.99628 * 12 10 9 26 26 H 1.09003 * 110.75892 * 274.93059 * 16 14 13 27 27 H 1.08994 * 110.75685 * 38.31013 * 16 14 13 28 28 H 1.08999 * 110.52262 * 203.49213 * 17 16 14 29 29 H 1.08996 * 110.37176 * 80.90206 * 17 16 14 30 30 H 1.08993 * 110.03678 * 264.23402 * 18 17 16 31 31 H 1.09000 * 110.02940 * 142.80136 * 18 17 16 32 32 H 1.00898 * 110.99620 * 62.80551 * 21 19 18 33 33 H 1.00900 * 110.99531 * 186.76270 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 8 2.1725 -5.9491 0.0027 14 6 1.5579 -7.2391 0.0038 15 1 0.5903 -7.1993 0.5039 16 6 1.3984 -7.7649 -1.4444 17 6 1.3231 -9.3002 -1.2428 18 6 2.3269 -9.5844 -0.1063 19 6 2.4761 -8.2740 0.6863 20 1 3.5111 -7.9337 0.6537 21 7 2.0572 -8.4770 2.0796 22 1 -0.4850 0.8401 -0.0004 23 1 0.3535 -2.3906 0.0005 24 1 0.6175 -4.9212 -0.8880 25 1 0.6169 -4.9201 0.8920 26 1 0.4802 -7.3867 -1.8938 27 1 2.2646 -7.4979 -2.0498 28 1 1.6206 -9.8202 -2.1534 29 1 0.3167 -9.5949 -0.9455 30 1 3.2894 -9.8801 -0.5235 31 1 1.9430 -10.3716 0.5426 32 1 2.6489 -9.1521 2.5403 33 1 2.0444 -7.6033 2.5842 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131379680.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:00 Heat of formation + Delta-G solvation = -94.724714 kcal Electronic energy + Delta-G solvation = -15767.053912 eV Core-core repulsion = 13020.118128 eV Total energy + Delta-G solvation = -2746.935784 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.16324 -37.98445 -35.79347 -33.87993 -32.67236 -31.26514 -28.50378 -27.25442 -25.92137 -24.23030 -20.84739 -20.02545 -19.34817 -17.97055 -16.88084 -16.19402 -15.51653 -15.23663 -14.96877 -14.77039 -14.31961 -13.91777 -13.71830 -13.02055 -12.73713 -12.37812 -11.75809 -11.60906 -11.50047 -11.33560 -11.16222 -11.04027 -10.72011 -10.53157 -10.39518 -10.23347 -9.53849 -9.22544 -8.76322 -8.35287 -7.99139 -6.43112 -3.84338 3.17719 3.26334 3.32026 3.69394 3.86945 4.22158 4.46914 4.50726 4.72778 4.98411 5.19441 5.22768 5.31188 5.40524 5.50370 5.55975 5.64056 5.82580 5.85024 5.89392 5.93294 6.00767 6.09404 6.21658 6.28987 7.06704 7.34873 7.53245 7.54210 8.04152 8.59610 9.16131 9.50491 10.02382 10.74637 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.060574 B = 0.004842 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.131575 B = 5781.903966 C = 5889.277672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.560 5.560 10 C 0.442 3.558 11 O -0.577 6.577 12 C 0.055 3.945 13 O -0.353 6.353 14 C 0.082 3.918 15 H 0.075 0.925 16 C -0.146 4.146 17 C -0.118 4.118 18 C -0.116 4.116 19 C 0.086 3.914 20 H 0.053 0.947 21 N -0.845 5.845 22 H 0.272 0.728 23 H 0.393 0.607 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.339 0.661 33 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.055 -15.339 0.116 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.198 5.198 10 C 0.227 3.773 11 O -0.461 6.461 12 C -0.025 4.025 13 O -0.271 6.271 14 C 0.023 3.977 15 H 0.093 0.907 16 C -0.185 4.185 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.025 4.025 20 H 0.071 0.929 21 N -0.376 5.376 22 H 0.082 0.918 23 H 0.226 0.774 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.839 -15.408 -0.189 15.431 hybrid contribution 0.367 1.214 0.240 1.290 sum -0.473 -14.194 0.051 14.202 Atomic orbital electron populations 1.69615 1.05952 1.28245 1.50448 1.25269 0.95656 0.99727 0.97201 0.85829 0.79230 0.80638 0.78431 1.20348 1.20877 1.19371 1.19710 0.93419 0.82024 1.47763 0.87842 1.41755 1.09218 1.04279 1.64573 1.19580 0.88386 0.84379 0.84948 1.90540 1.13740 1.86995 1.54808 1.22202 0.91949 0.87527 1.00809 1.88044 1.31940 1.12335 1.94796 1.23057 0.96201 0.83395 0.95008 0.90697 1.22986 1.02667 0.95422 0.97378 1.22235 0.99470 0.95738 0.98148 1.22130 0.99515 0.96701 0.97035 1.21961 0.97611 0.94270 0.88654 0.92933 1.58934 1.59629 1.15977 1.03017 0.91804 0.77358 0.91901 0.91843 0.91213 0.90305 0.91524 0.91417 0.91695 0.90770 0.84850 0.84149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 8 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 9 N -0.56 -14.56 5.29 -10.96 -0.06 -14.61 16 10 C 0.44 11.04 7.86 -10.99 -0.09 10.96 16 11 O -0.58 -16.83 16.08 -14.37 -0.23 -17.06 16 12 C 0.06 1.06 6.27 36.01 0.23 1.28 16 13 O -0.35 -6.74 9.59 -55.14 -0.53 -7.26 16 14 C 0.08 1.19 2.98 -25.07 -0.07 1.11 16 15 H 0.08 1.04 7.75 -51.93 -0.40 0.64 16 16 C -0.15 -1.83 6.63 -24.66 -0.16 -1.99 16 17 C -0.12 -1.19 6.83 -24.99 -0.17 -1.36 16 18 C -0.12 -1.20 6.59 -25.61 -0.17 -1.36 16 19 C 0.09 1.10 3.79 -66.59 -0.25 0.85 16 20 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 21 N -0.85 -9.53 9.10 -3.71 -0.03 -9.56 16 22 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 23 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.71 7.92 -51.93 -0.41 0.30 16 32 H 0.34 3.11 9.07 -39.29 -0.36 2.75 16 33 H 0.35 4.06 9.01 -39.29 -0.35 3.71 16 LS Contribution 282.24 15.07 4.25 4.25 Total: -1.00 -32.16 282.24 -6.56 -38.72 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -4.73 Total: 11.92 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.93 Total: 1.36 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.63 Total: -48.04 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.76 Total: -24.32 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.16 -6.56 -38.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131379680.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.003 kcal (2) G-P(sol) polarization free energy of solvation -32.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds