Wall clock time and date at job start Mon Mar 30 2020 03:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00054 * 3 2 1 5 5 H 1.48500 * 109.47256 * 29.99968 * 3 2 1 6 6 H 1.48499 * 109.47161 * 149.99619 * 3 2 1 7 7 C 1.38948 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99855 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99944 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00037 * 179.97438 * 10 9 7 13 13 O 1.42905 * 109.46972 * 179.97438 * 12 10 9 14 14 C 1.42899 * 113.99778 * 179.97438 * 13 12 10 15 15 H 1.08998 * 110.43618 * 330.70057 * 14 13 12 16 16 C 1.54891 * 110.48420 * 93.24400 * 14 13 12 17 17 C 1.55035 * 102.68230 * 156.51797 * 16 14 13 18 18 C 1.54267 * 104.27887 * 322.23095 * 17 16 14 19 19 C 1.53874 * 106.59923 * 23.52196 * 18 17 16 20 20 H 1.09000 * 110.03183 * 240.71415 * 19 18 17 21 21 N 1.46903 * 110.07521 * 119.30455 * 19 18 17 22 22 H 0.97002 * 120.00016 * 0.02562 * 1 2 3 23 23 H 0.96996 * 120.00211 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.47103 * 59.99751 * 12 10 9 25 25 H 1.09000 * 109.47247 * 299.99628 * 12 10 9 26 26 H 1.09003 * 110.75892 * 274.93059 * 16 14 13 27 27 H 1.08994 * 110.75685 * 38.31013 * 16 14 13 28 28 H 1.08999 * 110.52262 * 203.49213 * 17 16 14 29 29 H 1.08996 * 110.37176 * 80.90206 * 17 16 14 30 30 H 1.08993 * 110.03678 * 264.23402 * 18 17 16 31 31 H 1.09000 * 110.02940 * 142.80136 * 18 17 16 32 32 H 1.00898 * 110.99620 * 62.80551 * 21 19 18 33 33 H 1.00900 * 110.99531 * 186.76270 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 8 2.1725 -5.9491 0.0027 14 6 1.5579 -7.2391 0.0038 15 1 0.5903 -7.1993 0.5039 16 6 1.3984 -7.7649 -1.4444 17 6 1.3231 -9.3002 -1.2428 18 6 2.3269 -9.5844 -0.1063 19 6 2.4761 -8.2740 0.6863 20 1 3.5111 -7.9337 0.6537 21 7 2.0572 -8.4770 2.0796 22 1 -0.4850 0.8401 -0.0004 23 1 0.3535 -2.3906 0.0005 24 1 0.6175 -4.9212 -0.8880 25 1 0.6169 -4.9201 0.8920 26 1 0.4802 -7.3867 -1.8938 27 1 2.2646 -7.4979 -2.0498 28 1 1.6206 -9.8202 -2.1534 29 1 0.3167 -9.5949 -0.9455 30 1 3.2894 -9.8801 -0.5235 31 1 1.9430 -10.3716 0.5426 32 1 2.6489 -9.1521 2.5403 33 1 2.0444 -7.6033 2.5842 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131379680.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:00 Heat of formation + Delta-G solvation = -119.154339 kcal Electronic energy + Delta-G solvation = -15768.113260 eV Core-core repulsion = 13020.118128 eV Total energy + Delta-G solvation = -2747.995132 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54857 -39.66321 -37.12373 -35.96450 -33.57792 -33.36221 -29.91796 -28.44089 -27.12301 -26.07119 -21.81369 -21.48680 -20.82057 -20.03020 -18.20600 -17.72828 -16.77673 -16.75590 -16.47705 -16.08710 -15.93896 -15.36802 -14.85939 -14.73413 -14.38118 -13.58037 -13.44435 -13.03385 -12.97115 -12.72229 -12.46818 -12.32148 -12.12807 -12.01940 -11.67333 -11.57267 -11.48021 -10.51981 -10.39093 -10.08298 -9.70967 -8.51038 -6.01120 1.36495 1.41390 1.54316 1.94140 2.17353 2.46950 3.14952 3.36678 3.56355 3.60058 3.86140 4.07999 4.10678 4.33278 4.36365 4.38736 4.48770 4.51009 4.70308 4.83975 5.01551 5.04637 5.15695 5.18839 5.37044 5.39954 5.88782 6.08541 6.29156 6.51932 6.55828 7.06507 7.46042 8.01848 8.66257 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.060574 B = 0.004842 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.131575 B = 5781.903966 C = 5889.277672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.274 1.274 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.563 5.563 10 C 0.433 3.567 11 O -0.627 6.627 12 C 0.069 3.931 13 O -0.385 6.385 14 C 0.074 3.926 15 H 0.084 0.916 16 C -0.148 4.148 17 C -0.110 4.110 18 C -0.111 4.111 19 C 0.085 3.915 20 H 0.028 0.972 21 N -0.841 5.841 22 H 0.280 0.720 23 H 0.399 0.601 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.351 0.649 33 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 -16.044 0.008 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.201 5.201 10 C 0.221 3.779 11 O -0.514 6.514 12 C -0.011 4.011 13 O -0.303 6.303 14 C 0.016 3.984 15 H 0.102 0.898 16 C -0.186 4.186 17 C -0.148 4.148 18 C -0.149 4.149 19 C -0.027 4.027 20 H 0.046 0.954 21 N -0.372 5.372 22 H 0.090 0.910 23 H 0.234 0.766 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.165 0.835 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.981 -16.139 -0.295 16.263 hybrid contribution 0.695 1.398 0.290 1.588 sum -1.287 -14.741 -0.005 14.797 Atomic orbital electron populations 1.69666 1.06836 1.29598 1.49579 1.26072 0.96588 1.02408 0.95793 0.84890 0.77856 0.76563 0.78789 1.19455 1.19194 1.19838 1.19677 0.92756 0.83816 1.50629 0.90390 1.41793 1.09435 1.04314 1.64590 1.20636 0.88168 0.86036 0.83065 1.90499 1.16183 1.88010 1.56753 1.22027 0.91131 0.84641 1.03252 1.88013 1.33237 1.13904 1.95183 1.23375 0.96690 0.81613 0.96715 0.89801 1.22993 1.02395 0.97350 0.95837 1.22233 1.00054 0.93764 0.98761 1.22124 1.00227 0.95485 0.97017 1.21984 0.95861 0.95094 0.89740 0.95440 1.58963 1.59708 1.16041 1.02475 0.91018 0.76612 0.89289 0.89144 0.90313 0.91899 0.89867 0.90271 0.90987 0.89500 0.83494 0.84602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.24 13.05 21.66 0.28 -48.96 16 2 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 3 Si 1.00 42.93 29.55 68.60 2.03 44.96 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.34 -19.66 9.68 84.04 0.81 -18.85 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.56 -29.72 5.29 -306.98 -1.62 -31.35 16 10 C 0.43 22.06 7.86 87.66 0.69 22.75 16 11 O -0.63 -37.91 16.08 15.96 0.26 -37.66 16 12 C 0.07 2.58 6.27 71.24 0.45 3.03 16 13 O -0.38 -14.62 9.59 -129.94 -1.25 -15.86 16 14 C 0.07 2.04 2.98 31.67 0.09 2.14 16 15 H 0.08 2.15 7.75 -2.39 -0.02 2.13 16 16 C -0.15 -3.46 6.63 31.94 0.21 -3.25 16 17 C -0.11 -1.93 6.83 31.72 0.22 -1.71 16 18 C -0.11 -2.04 6.59 31.32 0.21 -1.83 16 19 C 0.08 2.08 3.79 45.64 0.17 2.25 16 20 H 0.03 0.81 8.07 -2.39 -0.02 0.79 16 21 N -0.84 -17.84 9.10 -165.67 -1.51 -19.35 16 22 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 23 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 24 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 25 H 0.09 2.88 8.10 -2.39 -0.02 2.86 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.40 7.92 -2.39 -0.02 1.39 16 32 H 0.35 5.93 9.07 -89.70 -0.81 5.12 16 33 H 0.34 7.77 9.01 -89.69 -0.81 6.96 16 Total: -1.00 -69.87 282.24 0.29 -69.58 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -1.22 Total: 34.09 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 3.32 Total: 4.55 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -2.85 Total: -99.65 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -0.99 Total: -53.52 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -69.87 0.29 -69.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131379680.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.578 kcal (2) G-P(sol) polarization free energy of solvation -69.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds