Wall clock time and date at job start Mon Mar 30 2020 03:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99829 * 2 1 4 4 H 1.48494 * 109.47644 * 270.00627 * 3 2 1 5 5 H 1.48506 * 109.47143 * 30.00573 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00288 * 3 2 1 7 7 C 1.38811 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99997 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00314 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72352 * 12 11 10 15 15 C 1.47151 * 120.98153 * 359.97438 * 14 12 11 16 16 C 1.53717 * 108.16446 * 129.42886 * 15 14 12 17 17 O 1.42967 * 109.14561 * 52.53739 * 16 15 14 18 18 C 1.42962 * 114.16617 * 297.29050 * 17 16 15 19 19 C 1.47151 * 120.98263 * 180.27616 * 14 12 11 20 20 H 0.96995 * 120.00150 * 359.97438 * 1 2 3 21 21 H 0.97001 * 119.99643 * 0.02562 * 9 7 2 22 22 H 1.09004 * 109.46794 * 60.00129 * 10 9 7 23 23 H 1.09000 * 109.47559 * 300.00606 * 10 9 7 24 24 H 1.09004 * 109.47066 * 60.00265 * 11 10 9 25 25 H 1.08994 * 109.47405 * 300.00096 * 11 10 9 26 26 H 1.08997 * 109.67944 * 249.20758 * 15 14 12 27 27 H 1.09001 * 109.68346 * 9.76100 * 15 14 12 28 28 H 1.08998 * 109.65611 * 292.57311 * 16 15 14 29 29 H 1.08994 * 109.48424 * 172.39690 * 16 15 14 30 30 H 1.09008 * 109.51186 * 302.65841 * 18 17 16 31 31 H 1.08996 * 109.55507 * 182.53559 * 18 17 16 32 32 H 1.09000 * 109.68250 * 350.23937 * 19 14 12 33 33 H 1.09002 * 109.68088 * 110.79250 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0640 -4.8196 -0.0021 12 6 1.8176 -6.1247 -0.0026 13 8 3.0304 -6.1247 -0.0022 14 7 1.1437 -7.2919 0.0026 15 6 -0.3276 -7.3172 0.0095 16 6 -0.7960 -8.2549 -1.1149 17 8 -0.1392 -9.5173 -0.9767 18 6 1.2827 -9.4550 -1.1110 19 6 1.8576 -8.5787 0.0083 20 1 -0.4850 0.8400 0.0004 21 1 0.3557 -2.3880 -0.0005 22 1 2.6855 -3.7148 0.8879 23 1 2.6842 -3.7141 -0.8921 24 1 0.4370 -4.7613 -0.8918 25 1 0.4377 -4.7626 0.8881 26 1 -0.6839 -7.6860 0.9712 27 1 -0.7128 -6.3125 -0.1646 28 1 -0.5478 -7.8194 -2.0828 29 1 -1.8745 -8.3961 -1.0449 30 1 1.5384 -9.0238 -2.0790 31 1 1.7004 -10.4591 -1.0381 32 1 2.9201 -8.4098 -0.1665 33 1 1.7171 -9.0722 0.9700 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163596185.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:28 Heat of formation + Delta-G solvation = -65.872200 kcal Electronic energy + Delta-G solvation = -15835.444002 eV Core-core repulsion = 13089.759357 eV Total energy + Delta-G solvation = -2745.684645 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.32887 -38.38094 -34.94548 -34.78138 -32.21128 -31.43452 -29.26197 -27.71399 -24.70733 -23.90549 -22.42592 -21.21499 -19.12846 -17.45327 -16.98086 -16.54387 -15.91294 -15.71829 -15.29982 -15.09918 -14.49850 -14.02765 -13.75849 -13.22963 -12.82121 -12.76669 -12.62609 -12.05581 -11.65172 -11.10901 -11.02427 -10.95576 -10.77709 -10.72265 -10.40709 -10.08053 -9.73342 -9.59521 -8.86189 -8.67634 -6.91593 -5.75606 -3.04183 2.73971 2.80455 3.46105 3.51081 3.53251 3.54349 4.45919 4.51551 4.66554 4.76134 4.83141 4.97556 5.04414 5.23049 5.34861 5.44333 5.50118 5.52631 5.55562 5.65082 5.68995 6.03545 6.22511 6.32663 6.79775 6.85355 6.89934 7.29417 7.74022 8.23574 8.43754 9.54731 10.10454 10.46026 11.47641 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.059845 B = 0.004794 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.765394 B = 5839.267190 C = 6188.228654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.237 4.237 8 H 0.072 0.928 9 N -0.735 5.735 10 C 0.168 3.832 11 C -0.145 4.145 12 C 0.523 3.477 13 O -0.534 6.534 14 N -0.625 5.625 15 C 0.072 3.928 16 C 0.046 3.954 17 O -0.382 6.382 18 C 0.048 3.952 19 C 0.076 3.924 20 H 0.255 0.745 21 H 0.382 0.618 22 H 0.028 0.972 23 H 0.027 0.973 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.456 -19.006 -1.335 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.380 5.380 10 C 0.040 3.960 11 C -0.185 4.185 12 C 0.313 3.687 13 O -0.410 6.410 14 N -0.362 5.362 15 C -0.052 4.052 16 C -0.031 4.031 17 O -0.301 6.301 18 C -0.029 4.029 19 C -0.047 4.047 20 H 0.065 0.935 21 H 0.216 0.784 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.741 -19.033 -1.290 19.155 hybrid contribution 0.129 1.136 -0.016 1.143 sum -1.611 -17.897 -1.306 18.016 Atomic orbital electron populations 1.69651 1.05121 1.25655 1.58113 1.24731 0.95557 0.97696 1.03063 0.86158 0.78690 0.83652 0.77540 1.21698 1.21761 1.20694 1.19256 0.91186 0.83993 1.42356 0.91037 1.42339 1.05778 1.00033 1.89838 1.20377 0.92450 0.83891 0.99253 1.21866 1.00495 0.92020 1.04148 1.20961 0.88061 0.85114 0.74599 1.90682 1.14109 1.87140 1.49077 1.48228 1.06728 1.05864 1.75339 1.22548 0.80156 1.02289 1.00167 1.23087 0.98027 0.84424 0.97583 1.87947 1.19099 1.29720 1.93283 1.22998 0.81354 1.00864 0.97708 1.22241 0.98922 0.83970 0.99527 0.93541 0.78427 0.95419 0.95466 0.88855 0.88773 0.90403 0.88024 0.92353 0.87511 0.92567 0.87745 0.88089 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.43 13.06 55.49 0.72 -27.70 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.74 -19.13 5.60 -59.91 -0.34 -19.47 16 10 C 0.17 3.66 5.55 -4.05 -0.02 3.64 16 11 C -0.15 -2.37 4.19 -27.88 -0.12 -2.49 16 12 C 0.52 8.40 7.71 -10.98 -0.08 8.32 16 13 O -0.53 -10.47 15.45 5.55 0.09 -10.39 16 14 N -0.63 -7.81 3.01 -171.99 -0.52 -8.33 16 15 C 0.07 0.68 6.56 -3.31 -0.02 0.66 16 16 C 0.05 0.40 7.00 37.53 0.26 0.66 16 17 O -0.38 -3.92 10.74 -35.23 -0.38 -4.30 16 18 C 0.05 0.44 6.99 37.33 0.26 0.70 16 19 C 0.08 0.82 6.64 -3.51 -0.02 0.80 16 20 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 21 H 0.38 10.09 7.67 -40.82 -0.31 9.78 16 22 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 23 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 24 H 0.09 1.39 7.67 -51.93 -0.40 0.99 16 25 H 0.09 1.42 8.00 -51.93 -0.42 1.00 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.10 0.90 6.06 -51.93 -0.31 0.58 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 1.19 7.08 -51.93 -0.37 0.83 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 276.53 15.07 4.17 4.17 Total: -1.00 -34.08 276.53 -6.00 -40.08 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.73 Total: 3.43 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 0.01 Total: 4.76 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.13 Total: -55.50 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.29 Total: -14.68 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -34.08 -6.00 -40.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163596185.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.792 kcal (2) G-P(sol) polarization free energy of solvation -34.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds