Wall clock time and date at job start Mon Mar 30 2020 03:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99829 * 2 1 4 4 H 1.48494 * 109.47644 * 270.00627 * 3 2 1 5 5 H 1.48506 * 109.47143 * 30.00573 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00288 * 3 2 1 7 7 C 1.38811 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99997 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00314 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72352 * 12 11 10 15 15 C 1.47151 * 120.98153 * 359.97438 * 14 12 11 16 16 C 1.53717 * 108.16446 * 129.42886 * 15 14 12 17 17 O 1.42967 * 109.14561 * 52.53739 * 16 15 14 18 18 C 1.42962 * 114.16617 * 297.29050 * 17 16 15 19 19 C 1.47151 * 120.98263 * 180.27616 * 14 12 11 20 20 H 0.96995 * 120.00150 * 359.97438 * 1 2 3 21 21 H 0.97001 * 119.99643 * 0.02562 * 9 7 2 22 22 H 1.09004 * 109.46794 * 60.00129 * 10 9 7 23 23 H 1.09000 * 109.47559 * 300.00606 * 10 9 7 24 24 H 1.09004 * 109.47066 * 60.00265 * 11 10 9 25 25 H 1.08994 * 109.47405 * 300.00096 * 11 10 9 26 26 H 1.08997 * 109.67944 * 249.20758 * 15 14 12 27 27 H 1.09001 * 109.68346 * 9.76100 * 15 14 12 28 28 H 1.08998 * 109.65611 * 292.57311 * 16 15 14 29 29 H 1.08994 * 109.48424 * 172.39690 * 16 15 14 30 30 H 1.09008 * 109.51186 * 302.65841 * 18 17 16 31 31 H 1.08996 * 109.55507 * 182.53559 * 18 17 16 32 32 H 1.09000 * 109.68250 * 350.23937 * 19 14 12 33 33 H 1.09002 * 109.68088 * 110.79250 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0640 -4.8196 -0.0021 12 6 1.8176 -6.1247 -0.0026 13 8 3.0304 -6.1247 -0.0022 14 7 1.1437 -7.2919 0.0026 15 6 -0.3276 -7.3172 0.0095 16 6 -0.7960 -8.2549 -1.1149 17 8 -0.1392 -9.5173 -0.9767 18 6 1.2827 -9.4550 -1.1110 19 6 1.8576 -8.5787 0.0083 20 1 -0.4850 0.8400 0.0004 21 1 0.3557 -2.3880 -0.0005 22 1 2.6855 -3.7148 0.8879 23 1 2.6842 -3.7141 -0.8921 24 1 0.4370 -4.7613 -0.8918 25 1 0.4377 -4.7626 0.8881 26 1 -0.6839 -7.6860 0.9712 27 1 -0.7128 -6.3125 -0.1646 28 1 -0.5478 -7.8194 -2.0828 29 1 -1.8745 -8.3961 -1.0449 30 1 1.5384 -9.0238 -2.0790 31 1 1.7004 -10.4591 -1.0381 32 1 2.9201 -8.4098 -0.1665 33 1 1.7171 -9.0722 0.9700 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163596185.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:28 Heat of formation + Delta-G solvation = -91.335082 kcal Electronic energy + Delta-G solvation = -15836.548156 eV Core-core repulsion = 13089.759357 eV Total energy + Delta-G solvation = -2746.788799 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.38535 -39.39085 -36.83136 -35.83184 -33.94427 -32.51355 -30.89753 -28.77764 -26.28279 -25.05350 -23.81681 -22.56496 -20.27924 -19.21381 -18.38489 -17.42534 -17.02954 -16.76182 -16.56004 -16.07784 -15.97515 -15.33661 -15.26232 -15.05950 -14.42337 -14.10642 -13.52420 -13.07545 -12.91530 -12.86137 -12.46640 -12.45634 -12.33686 -12.09442 -11.84872 -11.75872 -11.25018 -10.98553 -10.88481 -9.65095 -9.05831 -7.98483 -5.28255 1.47535 1.49185 1.49425 1.58089 1.78830 2.55061 2.86493 3.35276 3.40518 3.73751 3.94458 3.99852 4.10273 4.15764 4.18877 4.28056 4.33985 4.49576 4.63024 4.66534 4.75863 4.85798 4.93365 5.10538 5.11778 5.38404 5.46810 6.09155 6.19585 6.24644 7.03032 7.31287 8.01264 8.29993 9.24705 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.059845 B = 0.004794 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.765394 B = 5839.267190 C = 6188.228654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.068 4.068 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.742 5.742 10 C 0.171 3.829 11 C -0.131 4.131 12 C 0.523 3.477 13 O -0.580 6.580 14 N -0.618 5.618 15 C 0.065 3.935 16 C 0.046 3.954 17 O -0.393 6.393 18 C 0.053 3.947 19 C 0.072 3.928 20 H 0.254 0.746 21 H 0.379 0.621 22 H 0.012 0.988 23 H 0.012 0.988 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.056 0.944 29 H 0.133 0.867 30 H 0.051 0.949 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.210 -19.794 -1.376 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.260 4.260 3 Si 0.803 3.197 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.386 5.386 10 C 0.044 3.956 11 C -0.171 4.171 12 C 0.312 3.688 13 O -0.460 6.460 14 N -0.353 5.353 15 C -0.057 4.057 16 C -0.031 4.031 17 O -0.311 6.311 18 C -0.024 4.024 19 C -0.050 4.050 20 H 0.063 0.937 21 H 0.212 0.788 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.111 0.889 27 H 0.128 0.872 28 H 0.074 0.926 29 H 0.151 0.849 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.105 0.895 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.519 -19.875 -1.335 20.078 hybrid contribution 0.341 1.302 0.003 1.346 sum -2.178 -18.573 -1.332 18.748 Atomic orbital electron populations 1.69782 1.06402 1.26361 1.58943 1.25538 0.96502 1.00926 1.03062 0.85132 0.77665 0.79302 0.77597 1.21140 1.21565 1.19836 1.19584 0.91412 0.85436 1.42221 0.91338 1.42447 1.05730 1.00765 1.89668 1.20333 0.93290 0.84399 0.97609 1.21665 0.99280 0.90258 1.05905 1.20811 0.87419 0.85965 0.74564 1.90666 1.15866 1.87808 1.51632 1.48270 1.08206 1.05387 1.73390 1.22838 0.77996 1.03335 1.01507 1.23227 0.99361 0.83614 0.96920 1.87943 1.19417 1.30538 1.93219 1.23041 0.81041 1.01744 0.96556 1.22408 0.98212 0.83363 1.01043 0.93685 0.78809 0.97023 0.96965 0.86977 0.87054 0.88939 0.87195 0.92573 0.84923 0.93021 0.85278 0.89523 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.46 13.06 21.65 0.28 -58.17 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 4 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.25 -14.81 9.99 84.03 0.84 -13.97 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -38.86 5.60 -343.47 -1.92 -40.78 16 10 C 0.17 7.53 5.55 86.38 0.48 8.00 16 11 C -0.13 -4.17 4.19 29.85 0.12 -4.05 16 12 C 0.52 16.53 7.71 87.66 0.68 17.20 16 13 O -0.58 -23.12 15.45 -3.04 -0.05 -23.17 16 14 N -0.62 -14.52 3.01 -816.44 -2.46 -16.98 16 15 C 0.07 1.07 6.56 86.50 0.57 1.64 16 16 C 0.05 0.66 7.00 72.22 0.51 1.17 16 17 O -0.39 -7.00 10.74 -148.98 -1.60 -8.60 16 18 C 0.05 0.86 6.99 72.10 0.50 1.37 16 19 C 0.07 1.46 6.64 86.37 0.57 2.03 16 20 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 21 H 0.38 20.03 7.67 -92.71 -0.71 19.32 16 22 H 0.01 0.55 8.10 -2.38 -0.02 0.53 16 23 H 0.01 0.58 8.10 -2.39 -0.02 0.56 16 24 H 0.11 3.15 7.67 -2.38 -0.02 3.13 16 25 H 0.11 3.17 8.00 -2.39 -0.02 3.15 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.11 1.63 6.06 -2.39 -0.01 1.62 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 2.03 7.08 -2.39 -0.02 2.01 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -72.60 276.53 1.41 -71.19 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.39 Total: 17.92 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 4.74 Total: 9.93 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -4.10 Total: -115.93 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -1.65 Total: -31.76 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -72.60 1.41 -71.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163596185.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.145 kcal (2) G-P(sol) polarization free energy of solvation -72.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds