Wall clock time and date at job start Mon Mar 30 2020 04:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47144 * 2 1 4 4 C 1.50693 * 109.47322 * 239.99467 * 2 1 3 5 5 H 1.07998 * 120.00350 * 240.00389 * 4 2 1 6 6 C 1.37883 * 119.99999 * 60.00048 * 4 2 1 7 7 N 1.31513 * 119.99696 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99798 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47424 * 269.99795 * 8 6 4 10 10 H 1.48505 * 109.47311 * 29.99901 * 8 6 4 11 11 H 1.48501 * 109.47240 * 149.99790 * 8 6 4 12 12 S 1.81404 * 109.46730 * 119.99558 * 2 1 3 13 13 C 1.81403 * 102.99751 * 186.72481 * 12 2 1 14 14 H 1.09002 * 109.47138 * 307.26787 * 13 12 2 15 15 C 1.52996 * 109.47312 * 67.27231 * 13 12 2 16 16 C 1.52997 * 109.47124 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47422 * 300.00349 * 16 15 13 18 18 C 1.52996 * 109.47256 * 59.99732 * 17 16 15 19 19 H 1.08993 * 109.47232 * 60.00097 * 18 17 16 20 20 C 1.53003 * 109.47148 * 180.02562 * 18 17 16 21 21 C 1.52996 * 109.46926 * 187.27609 * 13 12 2 22 22 H 1.09001 * 109.47045 * 53.92663 * 1 2 3 23 23 H 1.08999 * 109.47257 * 173.92408 * 1 2 3 24 24 H 1.08997 * 109.47576 * 293.93035 * 1 2 3 25 25 H 0.97004 * 119.99341 * 180.02562 * 7 6 4 26 26 H 1.08996 * 109.47427 * 299.99997 * 15 13 12 27 27 H 1.09001 * 109.46695 * 60.00001 * 15 13 12 28 28 H 1.09003 * 109.47476 * 179.97438 * 16 15 13 29 29 H 1.09009 * 109.47132 * 60.00088 * 16 15 13 30 30 H 1.09009 * 109.46754 * 299.99970 * 17 16 15 31 31 H 1.08996 * 109.47255 * 179.97438 * 17 16 15 32 32 H 1.08996 * 109.46927 * 180.02562 * 20 18 17 33 33 H 1.08996 * 109.46760 * 299.99836 * 20 18 17 34 34 H 1.08995 * 109.47215 * 60.00038 * 20 18 17 35 35 H 1.09007 * 109.47212 * 299.99299 * 21 13 12 36 36 H 1.09000 * 109.47622 * 59.99758 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 2.1382 -0.8593 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8020 0.8744 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9951 -3.9071 12 16 2.1346 -0.8551 1.4813 13 6 3.9256 -0.5756 1.4112 14 1 4.3036 -0.8840 0.4364 15 6 4.2186 0.9107 1.6251 16 6 5.7292 1.1462 1.5666 17 6 6.4158 0.3282 2.6623 18 6 6.1227 -1.1581 2.4484 19 1 6.5010 -1.4665 1.4739 20 6 6.8087 -1.9761 3.5445 21 6 4.6125 -1.3937 2.5065 22 1 -0.3633 0.6051 -0.8306 23 1 -0.3634 -1.0219 -0.1088 24 1 -0.3634 0.4168 0.9393 25 1 1.9041 -0.5277 -4.4374 26 1 3.7292 1.4935 0.8448 27 1 3.8406 1.2189 2.5999 28 1 5.9381 2.2052 1.7185 29 1 6.1076 0.8378 0.5919 30 1 6.0374 0.6366 3.6369 31 1 7.4920 0.4957 2.6203 32 1 6.6003 -3.0350 3.3918 33 1 7.8849 -1.8083 3.5031 34 1 6.4301 -1.6676 4.5189 35 1 4.2346 -1.0854 3.4814 36 1 4.4038 -2.4526 2.3542 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226532552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:43 Heat of formation + Delta-G solvation = -38.170356 kcal Electronic energy + Delta-G solvation = -14397.748871 eV Core-core repulsion = 12199.558682 eV Total energy + Delta-G solvation = -2198.190189 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.124 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.38209 -34.05110 -32.39447 -31.10557 -30.50616 -26.25956 -25.21261 -22.57307 -21.17869 -21.10300 -19.48132 -16.76266 -15.60137 -15.18248 -14.55436 -14.39553 -14.17170 -13.66337 -13.35003 -13.00039 -12.54350 -12.29948 -12.24145 -11.70844 -11.65417 -11.44895 -11.08174 -10.99764 -10.80610 -10.67526 -10.41971 -10.22707 -9.93624 -9.86369 -9.51284 -9.21774 -8.74211 -8.63958 -6.67143 -6.15885 -4.18139 2.74619 3.20288 3.29506 3.32133 3.71180 4.31178 4.85848 4.93324 5.05142 5.14914 5.35885 5.36852 5.63150 5.66819 5.72511 5.79464 5.84824 5.96034 5.99597 6.10147 6.18080 6.22335 6.33633 6.36162 6.39580 6.42178 6.45671 6.50526 6.60481 6.76104 6.78290 7.15115 7.49668 8.34197 8.86853 9.41948 10.95557 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.035518 B = 0.007708 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.150101 B = 3631.874576 C = 3780.610251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.069 3.931 3 H 0.042 0.958 4 C -0.518 4.518 5 H 0.083 0.917 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.267 1.267 11 H -0.294 1.294 12 S -0.305 6.305 13 C -0.037 4.037 14 H 0.093 0.907 15 C -0.109 4.109 16 C -0.118 4.118 17 C -0.111 4.111 18 C -0.090 4.090 19 H 0.071 0.929 20 C -0.144 4.144 21 C -0.090 4.090 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.039 0.961 25 H 0.266 0.734 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 2.718 11.494 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.059 4.059 3 H 0.060 0.940 4 C -0.556 4.556 5 H 0.101 0.899 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.192 1.192 11 H -0.222 1.222 12 S -0.074 6.074 13 C -0.166 4.166 14 H 0.111 0.889 15 C -0.148 4.148 16 C -0.157 4.157 17 C -0.149 4.149 18 C -0.110 4.110 19 H 0.090 0.910 20 C -0.202 4.202 21 C -0.129 4.129 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.867 2.128 12.066 13.584 hybrid contribution -0.023 1.412 -1.329 1.939 sum 5.843 3.540 10.737 12.726 Atomic orbital electron populations 1.21953 0.96547 1.01854 0.99118 1.21055 0.94684 0.96879 0.93319 0.94000 1.21143 1.32773 1.13787 0.87932 0.89893 1.24988 0.95490 0.96536 0.95678 1.69878 1.45136 1.40104 0.97959 0.86906 0.80918 0.83768 0.77079 1.20301 1.19181 1.22189 1.85883 1.06395 1.77440 1.37666 1.22871 0.93751 0.97489 1.02464 0.88901 1.21803 0.95498 0.95376 1.02163 1.21566 0.95681 0.99254 0.99198 1.21585 0.99604 0.94718 0.98969 1.21145 0.95242 0.95207 0.99387 0.91023 1.21808 0.99896 0.99902 0.98582 1.21392 0.93658 0.99874 0.97966 0.93311 0.91988 0.94164 0.92445 0.91539 0.91747 0.92247 0.91784 0.92192 0.92418 0.92708 0.92949 0.92871 0.91812 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.59 37.16 0.32 -2.72 16 2 C 0.07 1.66 2.19 -27.89 -0.06 1.60 16 3 H 0.04 1.02 6.03 -51.92 -0.31 0.70 16 4 C -0.52 -14.39 8.74 -34.44 -0.30 -14.70 16 5 H 0.08 2.53 7.89 -52.49 -0.41 2.12 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 8 Si 0.88 21.57 24.31 -169.99 -4.13 17.44 16 9 H -0.28 -6.58 6.92 56.52 0.39 -6.19 16 10 H -0.27 -6.24 6.53 56.52 0.37 -5.87 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 S -0.31 -6.47 20.46 -107.50 -2.20 -8.67 16 13 C -0.04 -0.68 2.50 -26.74 -0.07 -0.74 16 14 H 0.09 1.94 7.81 -51.92 -0.41 1.54 16 15 C -0.11 -1.79 5.13 -26.73 -0.14 -1.93 16 16 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 17 C -0.11 -1.33 5.20 -26.73 -0.14 -1.47 16 18 C -0.09 -1.14 2.72 -90.64 -0.25 -1.39 16 19 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 20 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 21 C -0.09 -1.36 4.49 -26.76 -0.12 -1.48 16 22 H 0.05 1.10 3.46 -51.93 -0.18 0.92 16 23 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.07 1.22 6.89 -51.93 -0.36 0.86 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 30 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 285.64 15.07 4.30 4.30 Total: -1.00 -28.85 285.64 -8.26 -37.11 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.34 Total: -0.33 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -0.67 Total: -23.70 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.77 Total: -26.15 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.13 Total: 17.44 kcal Atomic # 16 Polarization: -6.47 SS G_CDS: -2.20 Total: -8.67 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.85 -8.26 -37.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226532552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.058 kcal (2) G-P(sol) polarization free energy of solvation -28.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds