Wall clock time and date at job start Mon Mar 30 2020 04:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47144 * 2 1 4 4 C 1.50693 * 109.47322 * 239.99467 * 2 1 3 5 5 H 1.07998 * 120.00350 * 240.00389 * 4 2 1 6 6 C 1.37883 * 119.99999 * 60.00048 * 4 2 1 7 7 N 1.31513 * 119.99696 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99798 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47424 * 269.99795 * 8 6 4 10 10 H 1.48505 * 109.47311 * 29.99901 * 8 6 4 11 11 H 1.48501 * 109.47240 * 149.99790 * 8 6 4 12 12 S 1.81404 * 109.46730 * 119.99558 * 2 1 3 13 13 C 1.81403 * 102.99751 * 186.72481 * 12 2 1 14 14 H 1.09002 * 109.47138 * 307.26787 * 13 12 2 15 15 C 1.52996 * 109.47312 * 67.27231 * 13 12 2 16 16 C 1.52997 * 109.47124 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47422 * 300.00349 * 16 15 13 18 18 C 1.52996 * 109.47256 * 59.99732 * 17 16 15 19 19 H 1.08993 * 109.47232 * 60.00097 * 18 17 16 20 20 C 1.53003 * 109.47148 * 180.02562 * 18 17 16 21 21 C 1.52996 * 109.46926 * 187.27609 * 13 12 2 22 22 H 1.09001 * 109.47045 * 53.92663 * 1 2 3 23 23 H 1.08999 * 109.47257 * 173.92408 * 1 2 3 24 24 H 1.08997 * 109.47576 * 293.93035 * 1 2 3 25 25 H 0.97004 * 119.99341 * 180.02562 * 7 6 4 26 26 H 1.08996 * 109.47427 * 299.99997 * 15 13 12 27 27 H 1.09001 * 109.46695 * 60.00001 * 15 13 12 28 28 H 1.09003 * 109.47476 * 179.97438 * 16 15 13 29 29 H 1.09009 * 109.47132 * 60.00088 * 16 15 13 30 30 H 1.09009 * 109.46754 * 299.99970 * 17 16 15 31 31 H 1.08996 * 109.47255 * 179.97438 * 17 16 15 32 32 H 1.08996 * 109.46927 * 180.02562 * 20 18 17 33 33 H 1.08996 * 109.46760 * 299.99836 * 20 18 17 34 34 H 1.08995 * 109.47215 * 60.00038 * 20 18 17 35 35 H 1.09007 * 109.47212 * 299.99299 * 21 13 12 36 36 H 1.09000 * 109.47622 * 59.99758 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 2.1382 -0.8593 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8020 0.8744 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9951 -3.9071 12 16 2.1346 -0.8551 1.4813 13 6 3.9256 -0.5756 1.4112 14 1 4.3036 -0.8840 0.4364 15 6 4.2186 0.9107 1.6251 16 6 5.7292 1.1462 1.5666 17 6 6.4158 0.3282 2.6623 18 6 6.1227 -1.1581 2.4484 19 1 6.5010 -1.4665 1.4739 20 6 6.8087 -1.9761 3.5445 21 6 4.6125 -1.3937 2.5065 22 1 -0.3633 0.6051 -0.8306 23 1 -0.3634 -1.0219 -0.1088 24 1 -0.3634 0.4168 0.9393 25 1 1.9041 -0.5277 -4.4374 26 1 3.7292 1.4935 0.8448 27 1 3.8406 1.2189 2.5999 28 1 5.9381 2.2052 1.7185 29 1 6.1076 0.8378 0.5919 30 1 6.0374 0.6366 3.6369 31 1 7.4920 0.4957 2.6203 32 1 6.6003 -3.0350 3.3918 33 1 7.8849 -1.8083 3.5031 34 1 6.4301 -1.6676 4.5189 35 1 4.2346 -1.0854 3.4814 36 1 4.4038 -2.4526 2.3542 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226532552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:43 Heat of formation + Delta-G solvation = -53.685849 kcal Electronic energy + Delta-G solvation = -14398.421673 eV Core-core repulsion = 12199.558682 eV Total energy + Delta-G solvation = -2198.862991 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.55520 -36.08577 -33.56970 -33.16218 -31.72520 -27.37103 -27.17982 -24.01321 -22.93553 -22.28459 -20.66802 -18.89614 -17.37302 -16.75482 -16.05300 -15.73845 -15.52494 -15.13499 -14.93356 -14.41587 -14.18465 -13.94051 -13.42696 -13.23088 -13.01021 -12.85508 -12.58883 -12.46336 -12.31409 -12.12516 -11.84764 -11.62971 -11.47797 -11.37479 -11.09414 -10.91481 -10.77106 -10.44437 -8.45944 -8.32240 -6.44302 1.10234 1.26170 1.30807 1.41105 1.94404 2.24972 2.96714 3.71736 3.74968 4.00623 4.15421 4.23215 4.35784 4.44562 4.50301 4.52142 4.56187 4.58299 4.69796 4.78084 4.86720 4.88451 5.00299 5.04608 5.15164 5.17572 5.27381 5.31404 5.35337 5.39819 5.41882 5.44165 5.59473 6.11024 6.58694 7.19354 8.78666 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.035518 B = 0.007708 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.150101 B = 3631.874576 C = 3780.610251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.065 3.935 3 H 0.042 0.958 4 C -0.520 4.520 5 H 0.037 0.963 6 C 0.022 3.978 7 N -0.941 5.941 8 Si 0.945 3.055 9 H -0.262 1.262 10 H -0.247 1.247 11 H -0.293 1.293 12 S -0.311 6.311 13 C -0.031 4.031 14 H 0.054 0.946 15 C -0.105 4.105 16 C -0.115 4.115 17 C -0.106 4.106 18 C -0.088 4.088 19 H 0.057 0.943 20 C -0.139 4.139 21 C -0.084 4.084 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.269 0.731 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.708 4.342 13.609 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.064 4.064 3 H 0.060 0.940 4 C -0.559 4.559 5 H 0.055 0.945 6 C -0.178 4.178 7 N -0.581 5.581 8 Si 0.771 3.229 9 H -0.187 1.187 10 H -0.171 1.171 11 H -0.221 1.221 12 S -0.080 6.080 13 C -0.160 4.160 14 H 0.073 0.927 15 C -0.144 4.144 16 C -0.155 4.155 17 C -0.143 4.143 18 C -0.108 4.108 19 H 0.075 0.925 20 C -0.197 4.197 21 C -0.123 4.123 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.062 3.747 14.202 15.889 hybrid contribution 0.006 0.803 -1.971 2.128 sum 6.068 4.549 12.231 14.392 Atomic orbital electron populations 1.21889 0.94813 1.01685 1.00746 1.20945 0.96171 0.96487 0.92818 0.94020 1.21244 1.32028 1.12579 0.90075 0.94464 1.25845 0.96941 0.99890 0.95101 1.70025 1.47054 1.42307 0.98677 0.85891 0.79457 0.79886 0.77616 1.18728 1.17118 1.22078 1.85756 1.09216 1.77595 1.35395 1.22993 0.91433 0.99774 1.01817 0.92720 1.21761 0.97565 0.93150 1.01937 1.21568 0.93510 1.01019 0.99355 1.21574 1.00802 0.93236 0.98674 1.21148 0.93250 0.96678 0.99769 0.92482 1.21763 1.00665 0.99281 0.97946 1.21392 0.95325 0.98546 0.97012 0.93320 0.92803 0.91143 0.92233 0.94033 0.90239 0.90118 0.93361 0.90748 0.90217 0.92940 0.91299 0.91772 0.90558 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.59 71.98 0.62 -5.11 16 2 C 0.06 3.09 2.19 29.85 0.07 3.16 16 3 H 0.04 2.00 6.03 -2.39 -0.01 1.99 16 4 C -0.52 -29.97 8.74 25.60 0.22 -29.75 16 5 H 0.04 2.42 7.89 -2.91 -0.02 2.40 16 6 C 0.02 1.26 5.45 84.66 0.46 1.72 16 7 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 8 Si 0.95 44.20 24.31 68.60 1.67 45.87 16 9 H -0.26 -11.58 6.92 99.48 0.69 -10.90 16 10 H -0.25 -10.71 6.53 99.48 0.65 -10.06 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 S -0.31 -13.22 20.46 -56.49 -1.16 -14.37 16 13 C -0.03 -1.16 2.50 30.59 0.08 -1.09 16 14 H 0.05 2.43 7.81 -2.39 -0.02 2.41 16 15 C -0.10 -3.36 5.13 30.59 0.16 -3.20 16 16 C -0.12 -2.96 5.92 30.59 0.18 -2.78 16 17 C -0.11 -2.21 5.20 30.59 0.16 -2.05 16 18 C -0.09 -2.10 2.72 -10.81 -0.03 -2.13 16 19 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 20 C -0.14 -2.56 9.19 71.98 0.66 -1.90 16 21 C -0.08 -2.47 4.49 30.58 0.14 -2.33 16 22 H 0.05 2.08 3.46 -2.39 -0.01 2.07 16 23 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 24 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 26 H 0.04 1.52 6.89 -2.39 -0.02 1.50 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -64.00 285.64 4.47 -59.53 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.94 Total: 12.76 kcal Atomic # 6 Polarization: -48.17 SS G_CDS: 2.71 Total: -45.45 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.30 Total: -58.33 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.67 Total: 45.87 kcal Atomic # 16 Polarization: -13.22 SS G_CDS: -1.16 Total: -14.37 kcal Total: -64.00 4.47 -59.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226532552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.845 kcal (2) G-P(sol) polarization free energy of solvation -63.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds